NO09G00320, NO09G00320 (gene) Nannochloropsis oceanica

Overview
NameNO09G00320
Unique NameNO09G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3144
Alignment locationchr9:158141..161284 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:158141..161284 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00320 vs. NCBI_GenBank
Match: XP_005855232.1 (hypothetical protein NGA_0160400 [Nannochloropsis gaditana CCMP526] >EKU21134.1 hypothetical protein NGA_0160400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 314.3 bits (804), Expect = 1.300e-81
Identity = 369/689 (53.56%), Postives = 425/689 (61.68%), Query Frame = 0 
Query:   19 GLLIWSGLKPDDGSGSQSNACWAFLRPRNAPSPSSSPLPPPRRRCLDNPASSSITWAMPPDKSQGSGRFPGQKEHQHKNNTRNQQYSSNKAPTTPTHRSNNDAGERISG-----------------------PQIRIGGGRGGEIKGRSGRQSRVVRILSGKEYTPEDILAVVDDSEVSDFLRLYRSEGLVKGLFKLGTLLHRDSHEKKVAVHKDPRFHRLLAKLEVQALAPAGFSAQSYSKILTALAHLNYLPPRQFLDHLRDGILVLLNQQVAAGPQQP-PTPPSPLGASLPDGPS--LRGGRIGGXXXXXXXXXXDQFFDPYSLSHIISAFVNLDCYRPGPEFMTQYTEAVANNLMDFQPVGLMGVIRIGVAATS----------------------------------------PPPDFMAQLVLAMDNQLDNFSWLDIPNAITALSKLLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFALKGTKLTVKDISLVLWSFSVLDIGMGHANALLALVDTATDLVGRHQLDPQDDEFAFRPGGGDDPAVLKYRQLVQGSMYLQTLHNPSLDHAVKRLEGVLQEAWRRR 642
            G+++WS L      G     C AF+  +N P    + LP   RR     A + + W  P +++         + HQ+ ++++    + ++  T  T R  +  G+R  G                                       S RQ+RVV+ILSG+EYT ED+LA+V D+EV+DFLRLYRSEGLVK LFKLG LL R+  E+K+ V +DPRFH LLA++E Q+ APAGFSAQSYSKILTALAHL ++PP  FLD LRDG+L  L  QVA GP QP P PP       P GPS  LRG               D  FDPYSLSHI+SAFVNLDCY+PG EFM  +TE VAN+LMDFQPVGLM +IR G A                                                                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VKD+SLVLWSF+VLD+G  HA ALLALV+TAT+L+ RHQLDPQDDEFA R  GGDDPAVLKYRQL+Q +MYL+TL  P L+ AV+RLE VL+EAW RR
Sbjct:   14 GVVLWSTLSWKGSYGRSGGRCCAFVPSKNFP----AVLPFVLRR-----APTHLVWQGPSEQNGYKAPPVQHRRHQYLDSSKE---THDETGTRGTTRDGDRTGKRAYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDRQARVVKILSGREYTAEDVLALVADAEVADFLRLYRSEGLVKALFKLGALLSREHREEKLRVRRDPRFHGLLARIEEQSEAPAGFSAQSYSKILTALAHLEHVPPPHFLDRLRDGMLGRLRDQVARGPLQPFPLPP-------PKGPSSDLRG--------------DDHCFDPYSLSHIMSAFVNLDCYQPGLEFMALFTEVVANSLMDFQPVGLMSIIR-GFAKLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKDVSLVLWSFAVLDVGAQHAPALLALVETATELIARHQLDPQDDEFASR-RGGDDPAVLKYRQLLQAAMYLRTLEAPLLNGAVQRLEDVLEEAWNRR 667
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BLAST of NO09G00320 vs. NCBI_GenBank
Match: EWM27763.1 (hypothetical protein Naga_100982g1 [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 9.300e-69
Identity = 175/389 (44.99%), Postives = 222/389 (57.07%), Query Frame = 0 
Query:    1 MPRRRRSGLKSLQTLLVCGLLIWSGLKPDDGSGSQSNACWAFLRPRNAPSPSSSPLPPPRRRCLDNPASSSITWAMPPDKSQGSGRFPGQKEHQHKNNTRNQQYSSNKAPTTPTHRSNNDAGERISG-----------------------PQIRIGGGRGGEIKGRSGRQSRVVRILSGKEYTPEDILAVVDDSEVSDFLRLYRSEGLVKGLFKLGTLLHRDSHEKKVAVHKDPRFHRLLAKLEVQALAPAGFSAQSYSKILTALAHLNYLPPRQFLDHLRDGILVLLNQQVAAGPQQP-PTPPSPLGASLPDGPS--LRGGRIGGXXXXXXXXXXDQFFDPYSLSHIISAFVNLDCYRPGPEFMTQYTEAVANNLMDFQPVGLMGVIR 364
            MPRRR    +S++ L    +++WS L      G     C AF+  +N P    + LP   RR     A + + W  P +++         + HQ+ ++++    + ++  T  T R  +  G+R  G                                       S RQ+RVV+ILSG+EYT ED+LA+V D+EV+DFLRLYRSEGLVK LFKLG LL R+  E+K+ V +DPRFH LLA++E Q+ APAGFSAQSYSKILTALAHL ++PP  FLD LRDG+L  L  QVA GP QP P PP       P GPS  LRG               D  FDPYSLSHI+SAFVNLDCY+PG EFM  +TE VAN+LMDFQPVGLM +IR
Sbjct:   20 MPRRRLPAWESVRCLFASSVVLWSTLSWKGSYGRSGGRCCAFVPSKNFP----AVLPFVLRR-----APTHLVWQGPSEQNGYKAPPVQHRRHQYLDSSKE---THDETGTRGTTRDGDRTGKRAYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDRQARVVKILSGREYTAEDVLALVADAEVADFLRLYRSEGLVKALFKLGALLSREHREEKLRVRRDPRFHGLLARIEEQSEAPAGFSAQSYSKILTALAHLEHVPPPHFLDRLRDGMLGRLRDQVARGPLQPFPLPP-------PKGPSSDLRG--------------DDHCFDPYSLSHIMSAFVNLDCYQPGLEFMALFTEVVANSLMDFQPVGLMSIIR 375
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BLAST of NO09G00320 vs. NCBI_GenBank
Match: EWM27765.1 (hypothetical protein Naga_100705g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 2.700e-44
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 0 
Query:  702 ALTQPTFHASVMETAKALGLRVSSGTLNEVFNLELLLYPCSNALRGEAALPVVILLEGRGHFFTNALGRFTGDAEFRRFLVSYQAECLRKFRAVAQVTIWDWRNAKTQDSKLRVLRNVLRKHGLDPAMYIPPT 835
            ++TQPT  AS ME A+ LGLRV+SGTLNE+FNLELLLYP  +    +  LPVV+L EGRGHFFTN LGRFTGDAEFRRF+V Y A+ L KF+AVAQ+T+WDWRNAKT   KL ++RNVLR  GLDPA+YIPP+
Sbjct:    7 SMTQPTLQASAMEVAEVLGLRVTSGTLNELFNLELLLYPWQHN-EADEDLPVVLLFEGRGHFFTNDLGRFTGDAEFRRFIVQYHADRLHKFKAVAQITVWDWRNAKTPRKKLHLIRNVLRMRGLDPAVYIPPS 138
The following BLAST results are available for this feature:
BLAST of NO09G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855232.11.300e-8153.56hypothetical protein NGA_0160400 [Nannochloropsis ... [more]
EWM27763.19.300e-6944.99hypothetical protein Naga_100982g1 [Nannochloropsi... [more]
EWM27765.12.700e-4468.42hypothetical protein Naga_100705g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010490NSK010490Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00320.1NO09G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|26293gene_4525Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100705g1gene2798Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00320.1NO09G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00320 ID=NO09G00320|Name=NO09G00320|organism=Nannochloropsis oceanica|type=gene|length=3144bp
ATGCCAAGACGGCGGCGGTCAGGGCTGAAATCGCTACAGACGCTTCTCGT
TTGCGgtaagttgccgtgtagtggtcgagaaagcgtacgcatgcctgccg
ttgccttctcaacaccctagtacacgacacacgaataataacacacccac
cctttcattctttagGCCTACTTATATGGAGCGGACTCAAGCCTGACGAT
GGAAGCGGTAGCCAGAGCAATGCCTGCTGGGCTTTCCTGCGACCCAGAAA
TGCCCCGTCCCCCTCCTCCTCCCCCTTGCCTCCGCCTAGAAGAAGATGCC
TCGACAACCCCGCTTCCTCCTCCATTACCTGGGCCATGCCACCCGATAAA
TCACAAGGATCAGGCAGATTCCCGGGACAAAAGGAGCACCAACATAAAAA
CAACACTCGGAATCAGCAGTACAGCTCCAACAAAGCTCCCACCACGCCAA
CCCATCGCAGCAACAACGATGCTGGCGAGCGTATTTCTGGGCCACAAATC
CGAATAGGAGGGGGAAGAGGAGGAGAAATAAAAGGACGCTCAGGGCGGCA
ATCACGGGTAGTTAGAATTTTGAGTGGGAAGGAATATACGCCAGAGGACA
TCTTGGCAGTTGTGGACGATTCGGAGGTCTCTGATTTCCTTAGACTCTAC
CGGAGTGAAGGGCTGGTCAAGGGCTTGTTCAAACTGGGTACATTGCTCCA
CCGTGATAGCCATGAGAAAAAGGTGGCTGTGCACAAGGACCCACGTTTCC
ATCGACTGCTGGCTAAGCTCGAGGTGCAGGCATTGGCACCCGCGGGGTTC
AGTGCCCAGAGCTACAGTAAGATCCTCACGGCTCTTGCTCACCTGAACTA
CCTCCCTCCCCGACAATTTCTCGATCATCTTAGGGACGGTATACTCGTGC
TGCTGAACCAGCAAGTCGCCGCAGGGCCGCAACAACCTCCCACCCCTCCC
TCCCCTCTTGGTGCCAGTTTGCCCGATGGTCCTTCGCTCAGGGGTGGGCG
CATCGGAGGAGGAGATGGAGAAGGGGAAGGGCACTACCACGACCAATTTT
TTGATCCTTATTCTCTGTCGCACATTATAAGTGCTTTTGTTAATTTAGAT
TGTTACCGCCCCGGGCCTGAATTCATGACGCAATATACGGAGGCCGTGGC
TAACAATTTGATGGATTTTCAACCCGTCGGCCTCATGGGCGTGATTCgtg
gctttgccaagctcgggcacgacccagggacaccatttttgaagctgttc
acagcctgtgccaagcggaaactgcccgagtttcccccgcgggccctctc
gagcacaatccagGGATTGGCGTCGCTGCGACATCACCCCCCCCTGATTT
CATGGCACAGCTCGTTCTGGCCATGGACAACCAACTGGATAATTTCTCTT
GGCTGGATATTCCGAATGCCATTACGGCGCTTTCCAAGCTTCTCTACCTC
CCCCCCGAGCCCTTTTTACGTCGTATTGTTGCGAAAGCGCGAGAGAAGCT
CTCAGCTTTCAATCCTCAAGCGCTGTGCAACTTTATTTTTGGCTTGTTTA
AGCTGCAACACGACCCAGgtaggcaggcttgtttttggtctcatacctcc
cttttattttatgagtccctcttcttccatttcgtcaatcaaagcttccg
cagggtcttccgattctgaaacctcattccctctccttctccctccgtcc
ctccctagGCGTGGACTTCATGGACGACTACTTCAAGGCCTGCCGAGTCA
AGATGAGTAAATTTACCCCTGCGGGATTCTCGTCCATGATTCATTCTGTG
GCTCGATTGGGCTATTACCCGGGGCTTGACTTTATGCATGATTTCGAAGC
GCATGTCACACCGCAACTGCAGCATTTCTCCCGGGGGGAGTTGTGGAAGC
TGGCCCATGGCCTCGCGACGCTTTATCACCGTCCGTCTGACACATTCCTC
CAAAATTATTGGGCAAGTTTTGCCTTGAAAGGGACGAAATTAACTGTGAA
GGACATTAGTCTGGTGTTGTGGTCGTTTTCGGTGCTTGATATTGGGATGG
GGCACGCGAACGCCTTGTTGGCATTGGTGGACACGGCTACCGATCTGGTG
GGGAGACATCAATTGGACCCTCAGGATGATGAATTTGCTTTTCGACCGGG
AGGAGGGGATGACCCTGCGGTGTTGAAATATCGGCAATTGGTGCAGGGGA
GCATGTATTTACAAACGTTGCATAACCCGTCCTTGGACCACGCTGTCAAG
CGATTGGAGGGTGTGTTGCAGGAGGCCTGGCGGCGGCGAGCGTTAGCGTT
GGAGGCGGCGGTAGCAGCAGCAGCAACAGCAGAAGGGGGGAAGGGAGTGG
CGGAGACCAGCCACAAGAGTGTGGGGGAAAAGGACGGAAAGGACAAACGA
CGGAAAGGAGGGCAGGGGTGGGTGTCTGCAACAACCCCCCCGTCCTCCTC
TCCCTTACCCCTTTCTCTTGCCCTGACCCAGCCGACCTTTCACGCCTCAG
TGATGGAAACGGCCAAAGCCCTCGGCCTTCGGGTATCTTCCGGTACACTG
AACGAAGTCTTTAACCTGGAACTTCTCCTCTACCCCTGCAGCAACGCTCT
CCGAGGTGAAGCAGCTTTACCGGTCGTCATCCTTCTAGAAGGCCGTGGGC
ATTTTTTCACCAATGCGCTGGGTCGATTCACAGGCGATGCAGAATTCCGT
CGATTCCTCGTCAGCTACCAAGCAGAGTGTCTGAGGAAATTCAGGGCGGT
GGCTCAGGTGACGATTTGGGACTGGAGGAATGCGAAGACGCAGGATAGTA
AGTTAAGGGTGTTGCGAAACGTGTTGCGAAAGCATGGTCTGGATCCGGCT
ATGTATATTCCACCGACGGTGGCATCGATGGGGGTGGTGAAAGGGGTGGA
GGTGGAGGAGGAGATTGATGAGAAGGGAGAAGAGACGGAAGAGCAGGTGG
TGATGATGCGAGGAGGAGGGCCGGCGCTTGCTCAAGAAGGGGGAGGAGAG
TACACGGACTCCGAGTCAACCGTTACTGCTGCGGCTTATGTACCTCTTCC
GCACGTCCAAAAAAGGGGTACTTGGAGTAGTAGCGGAAGTGCAGTTTCCC
CCAGTGCTTCGAGTAATAATTGGGATGTCATGCCGTCTGTATAA
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protein sequence of NO09G00320.1

>NO09G00320.1-protein ID=NO09G00320.1-protein|Name=NO09G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=926bp
MPRRRRSGLKSLQTLLVCGLLIWSGLKPDDGSGSQSNACWAFLRPRNAPS
PSSSPLPPPRRRCLDNPASSSITWAMPPDKSQGSGRFPGQKEHQHKNNTR
NQQYSSNKAPTTPTHRSNNDAGERISGPQIRIGGGRGGEIKGRSGRQSRV
VRILSGKEYTPEDILAVVDDSEVSDFLRLYRSEGLVKGLFKLGTLLHRDS
HEKKVAVHKDPRFHRLLAKLEVQALAPAGFSAQSYSKILTALAHLNYLPP
RQFLDHLRDGILVLLNQQVAAGPQQPPTPPSPLGASLPDGPSLRGGRIGG
GDGEGEGHYHDQFFDPYSLSHIISAFVNLDCYRPGPEFMTQYTEAVANNL
MDFQPVGLMGVIRIGVAATSPPPDFMAQLVLAMDNQLDNFSWLDIPNAIT
ALSKLLYLPPEPFLRRIVAKAREKLSAFNPQALCNFIFGLFKLQHDPGVD
FMDDYFKACRVKMSKFTPAGFSSMIHSVARLGYYPGLDFMHDFEAHVTPQ
LQHFSRGELWKLAHGLATLYHRPSDTFLQNYWASFALKGTKLTVKDISLV
LWSFSVLDIGMGHANALLALVDTATDLVGRHQLDPQDDEFAFRPGGGDDP
AVLKYRQLVQGSMYLQTLHNPSLDHAVKRLEGVLQEAWRRRALALEAAVA
AAATAEGGKGVAETSHKSVGEKDGKDKRRKGGQGWVSATTPPSSSPLPLS
LALTQPTFHASVMETAKALGLRVSSGTLNEVFNLELLLYPCSNALRGEAA
LPVVILLEGRGHFFTNALGRFTGDAEFRRFLVSYQAECLRKFRAVAQVTI
WDWRNAKTQDSKLRVLRNVLRKHGLDPAMYIPPTVASMGVVKGVEVEEEI
DEKGEETEEQVVMMRGGGPALAQEGGGEYTDSESTVTAAAYVPLPHVQKR
GTWSSSGSAVSPSASSNNWDVMPSV*
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Synonyms
Publications