NO08G04380, NO08G04380 (gene) Nannochloropsis oceanica

Overview
NameNO08G04380
Unique NameNO08G04380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1543
Alignment locationchr8:1283268..1284810 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1283268..1284810 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO08G04380 vs. NCBI_GenBank
Match: XP_005853540.1 (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >EKU22819.1 hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.5 bits (589), Expect = 3.400e-57
Identity = 114/219 (52.05%), Postives = 155/219 (70.78%), Query Frame = 0
Query:   78 SPPQLSLISSVQS----VVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATSVGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHF 293
            +P Q+ L+SS+ S    VV  VQDY+HHMP+WQYR +L ++ +L ++L++VL  SVLYGFNM  PH++V +V+L  P P  D++G+IP+ ST+LFSN N F   +  + I IYALPSRSP SLL  T+     LA HE+  + +   +++D+GS+DGG A V AVLEG+N  +Y TS   ITVK LGLIP SR++K ECTVL+KWG +  T+SDCYG F
Sbjct:   87 TPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGENPLTLSDCYGRF 305          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: EWM26903.1 (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 181.4 bits (459), Expect = 4.000e-42
Identity = 92/210 (43.81%), Postives = 135/210 (64.29%), Query Frame = 0
Query:   83 SLISSVQSVVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATSVGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHF 293
            SL SSV+S+V Q+ ++++ MP+W+YR M++SI +L ++ +++L  SV+YGF M  PH++VV V ++ P P     G++PV S M  +N N F  +  PTDI +Y+ P+RSP SLLG +++P   L A E      S   +RD+GS++GG  L +AVL G   F Y  +  ++TV  LG + I R+Y  ECTVLK WG D   +SDCYG F
Sbjct:  172 SLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKD-ILLSDCYGRF 377          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: EWM26900.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 7.300e-36
Identity = 82/167 (49.10%), Postives = 116/167 (69.46%), Query Frame = 0
Query:   78 SPPQLSLISSVQS----VVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLE 241
            +P Q+ L+SS+ S    VV  VQDY+HHMP+WQYR +L ++ +L ++L++VL  SVLYGFNM  PH++V +V+L  P P  D++G+IP+ ST+LFSN N F   +  + I IYALPSRSP SLL  T+     LA HE+  + +   +++D+GS+DGG A V AVLE
Sbjct:   87 TPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 253          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: XP_005853541.1 (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >EKU22820.1 hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 148.7 bits (374), Expect = 2.900e-32
Identity = 94/273 (34.43%), Postives = 136/273 (49.82%), Query Frame = 0
Query:   83 SLISSVQSVVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPF--------------------------PAV---------TKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVD----------------------------GGQALVKAVLEGENNFMYATSVGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHF 293
            SL SSV+S+V Q+ ++++ MP+W+YR M++SI +L ++ +++L  SV+YGF M  PH++VV V ++ P P     G++PV S M  +N N F                          P V           PTDI +Y+ P+RSP SLLG +++P   L A E      S   +RD+GS++                            GG  L +AVL G   F Y  +  ++TV  LG + I R+Y  ECTVLK WG D   +SDCYG F
Sbjct:  141 SLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEKSFGLSFRIDGEGRRVDVRFSYLSHPSQGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWGKD-ILLSDCYGRF 409          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: EWM26901.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 137.9 bits (346), Expect = 5.100e-29
Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 0
Query:  101 HMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLE 241
            H P+WQYR +L ++ +L ++L++VL  SVLYGFNM  PH++V +V+L  P P  D++G+IP+ ST+LFSN N F   +  + I IYALPSRSP SLL  T+     LA HE+  + +   +++D+GS+DGG A V AVLE
Sbjct:   22 HRPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLE 161          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: EWM26904.1 (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 122.1 bits (305), Expect = 2.900e-24
Identity = 61/147 (41.50%), Postives = 97/147 (65.99%), Query Frame = 0
Query:   83 SLISSVQSVVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVD 230
            SL SSV+S+V Q+ ++++ MP+W+YR M++SI +L ++ +++L  SV+YGF M  PH++VV V ++ P P     G++PV S M  +N N F  +  PTDI +Y+ P+RSP SLLG +++P   L A E      S   +RD+GS++
Sbjct:   48 SLHSSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIE 191          
BLAST of NO08G04380 vs. NCBI_GenBank
Match: EWM29974.1 (hypothetical protein Naga_100383g2 [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 2.300e-21
Identity = 67/234 (28.63%), Postives = 115/234 (49.15%), Query Frame = 0
Query:   68 EASTDEGSCPSPPQLSLISSVQSVVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDI---HIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATSVGDITVKVLGLIPISRSYKNECTVLKKWG------ADSFTMSDCYGHF 293
            +A    G     P  S   SV SV+S ++  +HH+PRW+YR +  S+ L  + L ++L  S++YGF + + H+ V     L P    DA GN P+ +T+   N N FP     +++   ++         + L +  +P  +L A  +   L +   +  + +   G+A++ AVL+G   F+ A +   + V+ LG I I R ++ +C+V   WG          T+SDC+G F
Sbjct:   97 QAQNSTGVPLRAPSFSTTQSVHSVMSDIRSRLHHLPRWKYRFLCASLLLAVILLGLLLCVSIVYGFGLKYVHLSVTGTTPLAP-NLVDAEGNAPMRATISLDNPNSFPITASASEVVLSYMNRTDGGQQYTPLASAPLPRIQLHARHKDCMLTTDFVLAHLPTKPEGKAIMGAVLQGRATFLNAAATLRLHVRALGFIRIVRRFEIDCSVATLWGEPTKADGSKDTVSDCFGAF 329          
The following BLAST results are available for this feature:
BLAST of NO08G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005853540.13.400e-5752.05hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
EWM26903.14.000e-4243.81hypothetical protein Naga_100103g11 [Nannochlorops... [more]
EWM26900.17.300e-3649.10hypothetical protein Naga_100103g12 [Nannochlorops... [more]
XP_005853541.12.900e-3234.43hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
EWM26901.15.100e-2948.57hypothetical protein Naga_100103g12 [Nannochlorops... [more]
EWM26904.12.900e-2441.50hypothetical protein Naga_100103g11 [Nannochlorops... [more]
EWM29974.12.300e-2128.63hypothetical protein Naga_100383g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04380.1NO08G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04380.1NO08G04380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04380 ID=NO08G04380|Name=NO08G04380|organism=Nannochloropsis oceanica|type=gene|length=1543bp
AAAAATAAAGACAGGTTGGAGTCTCGCATTTCTAAGTCATGCTTTCCACT
GGCCTGCCCCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAG
CCAACATGCCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCA
TTGAAAATGATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATC
AATACAAGCGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCAC
GGACGAGGGTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTG
TGCAAAGCGTGGTCTCGCAAGTCCAAGACTATATTCACCACATgtaggtt
ttgctagggtttgtaatgatttattacccgggtacgaatatctgaggtcg
acgtacatgtgcccaccctgcctccctccttccccccatctctgcctccc
tgtcttcctccctttacatcctgccccagGCCAAGGTGGCAGTACCGCTG
CATGTTGACGTCCATCTTCCTTCTTGCACTCGCCCTGATCATGGTCCTGC
TCTCCTCTGTGCTTTATGGCTTCAACATGCACCATCCCCACGTCCAAGTG
gtgagggagaggggaaggggggaacggaggaaggaagagactggaatgac
gatagcgtggttggttttagcggtgcttaattaatttccctaccttctcc
gactgcctggctagtcattgcccttacctctatctcctccccttttcact
caacaatcccttcctaccaccttaaaatagGTCGACGTCCAACTCCTCTA
CCCCTTTCCTTTCGCCGATGCAAGTGGCAACATCCCCGTGGCCTCGACCA
TGCTATTCTCAAATCGCAACCCCTTTCCCGCCGTCACCAAGCCCACCGAC
ATCCACATCTATGCCTTGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCAC
CACATCCATGCCCGGCTTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCT
TGAACAGCACGCTGAGCATTCGTGACATCGGGAGTGTGGATGGAGGACAA
GCCTTAGTCAAGGCTGTTTTGGAGgtgagttgtggaactacctcctgttt
ccaggttcctttcctctccgccttccattccgacatcctgtctttgtagc
acaccattttcagatgctatgccttaatgtcatcaaccgctcttgagaat
agaaataacacctccctccctctcttccttgttaccttccgctcctccca
gGGCGAAAACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCA
AGGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACC
GTGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGG
CCACTTTGCATAAGGGAGGGAAGAGAGGGAGGGCGAGGGAGGGTGTCCTT
ATGCTCGTGTGAGCCAACGCTTCTAAAATAAAATTGGTGCGTGGCACGGG
GAGAAACCTCTCCAAATGCTAAGCAAGATAAATTGAGGAAATA
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protein sequence of NO08G04380.1

>NO08G04380.1-protein ID=NO08G04380.1-protein|Name=NO08G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLSTGLPPDQDVKEDLPPPSSQHAYITLSDGKEVTEGIENDFKDGSRDGR
TDSINTSATTSSLPSKREASTDEGSCPSPPQLSLISSVQSVVSQVQDYIH
HMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYP
FPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTT
SMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATS
VGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHFA*
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Synonyms
Publications