NO08G04370, NO08G04370 (gene) Nannochloropsis oceanica

Overview
NameNO08G04370
Unique NameNO08G04370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3372
Alignment locationchr8:1279896..1283267 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1279896..1283267 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G04370 vs. NCBI_GenBank
Match: XP_005853540.1 (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526] >EKU22819.1 hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.4 bits (381), Expect = 5.700e-33
Identity = 80/233 (34.33%), Postives = 135/233 (57.94%), Query Frame = 0 
Query:  152 DREYYRPSPTPR--HVPSTTNNFEIRALPERERRSDTICGMPKW----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTRSYKSDCTIMRRWGVNPVTTSDCFGHFIR 379
            D E  +P  TP   H+ S+ ++  +  +       D +  MPKW    +   V + F++L + + VSV+ G+NM  P +++ N +  LP P+ D+ G IP++ST+L SN N F  T+  + ++I+ALPSRSP SLLA    + ++LA H++       F + ++  ++GG     A++ G    +YTTS  ++    L  IP +R++K +CT++R+WG NP+T SDC+G F +
Sbjct:   78 DGEDLKPPGTPSQIHLMSSMHSQVVNVV---HHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGENPLTLSDCYGRFYK 307
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BLAST of NO08G04370 vs. NCBI_GenBank
Match: EWM26903.1 (hypothetical protein Naga_100103g11 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-20
Identity = 61/194 (31.44%), Postives = 107/194 (55.15%), Query Frame = 0 
Query:  190 MPKW-----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTRSYKSDCTIMRRWGVNPVTTSDCFGHFIR 379
            MPKW     V+SIV L  ++  + + VSV+ G+ M  P +++V     LP P     G +PV S + ++N NRF I   PT + +++ P+RSP SLL  + +    L   + +   +S F + ++  +EGG  ++ A+++G   + YT +   +   +L F+ + R+Y  +CT+++ WG   +  SDC+G F R
Sbjct:  191 MPKWKYRLMVSSIVVL-LISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWG-KDILLSDCYGRFTR 379
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BLAST of NO08G04370 vs. NCBI_GenBank
Match: EWM26900.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 6.400e-16
Identity = 56/170 (32.94%), Postives = 96/170 (56.47%), Query Frame = 0 
Query:  152 DREYYRPSPTPR--HVPSTTNNFEIRALPERERRSDTICGMPKW----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGG 316
            D E  +P  TP   H+ S+ ++  +  +       D +  MPKW    +   V + F++L + + VSV+ G+NM  P +++ N +  LP P+ D+ G IP++ST+L SN N F  T+  + ++I+ALPSRSP SLLA    + ++LA H++       F + ++  ++GG
Sbjct:   78 DGEDLKPPGTPSQIHLMSSMHSQVVNVV---HHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGG 244
[Close]
BLAST of NO08G04370 vs. NCBI_GenBank
Match: EWM26901.1 (hypothetical protein Naga_100103g12 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 9.200e-15
Identity = 47/129 (36.43%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:  191 PKW----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGG 316
            PKW    +   V + F++L + + VSV+ G+NM  P +++ N +  LP P+ D+ G IP++ST+L SN N F  T+  + ++I+ALPSRSP SLLA    + ++LA H++       F + ++  ++GG
Sbjct:   24 PKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGG 152
[Close]
BLAST of NO08G04370 vs. NCBI_GenBank
Match: XP_005853541.1 (hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526] >EKU22820.1 hypothetical protein NGA_0432901 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-10
Identity = 61/257 (23.74%), Postives = 107/257 (41.63%), Query Frame = 0 
Query:  190 MPKW-----VASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTLLLSNFNRFRI-----------------------------------TTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVE----------------------------GGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTRSYKSDCTIMRRWGVNPVTTSDCFGHFIR 379
            MPKW     V+SIV L  ++  + + VSV+ G+ M  P +++V     LP P     G +PV S + ++N NRF I                                      PT + +++ P+RSP SLL  + +    L   + +   +S F + ++  +E                            GG  ++ A+++G   + YT +   +   +L F+ + R+Y  +CT+++ WG   +  SDC+G F R
Sbjct:  160 MPKWKYRLMVSSIVVL-LISFLLLLFVSVVYGFGMSLPHIEVVAVDVVLPLP---PDGSLPVRSLMRVNNPNRFSILHSPARNLGSGTLSQLTRFRRMLAPRVRLPFLVSGQVHPTDISVYSHPTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEKSFGLSFRIDGEGRRVDVRFSYLSHPSQGGPDLAEAVLTGGPTFFYTRAKAELTVMSLGFMSIGRAYILECTVLKYWG-KDILLSDCYGRFTR 411
The following BLAST results are available for this feature:
BLAST of NO08G04370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853540.15.700e-3334.33hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
EWM26903.12.500e-2031.44hypothetical protein Naga_100103g11 [Nannochlorops... [more]
EWM26900.16.400e-1632.94hypothetical protein Naga_100103g12 [Nannochlorops... [more]
EWM26901.19.200e-1536.43hypothetical protein Naga_100103g12 [Nannochlorops... [more]
XP_005853541.11.800e-1023.74hypothetical protein NGA_0432901 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006526NSK006526Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04370.1NO08G04370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583456gene_3790Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g12gene3636Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04370.1NO08G04370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04370 ID=NO08G04370|Name=NO08G04370|organism=Nannochloropsis oceanica|type=gene|length=3372bp
ACCAAATATAGGTTGATGCCAGGGCGCTTTGTTCTTTTTTTGGTTTTGGT
TTAGGTGAGAGGTAGTTTGACAGGTGCAATACGTAACTTCTCATCACCCT
CCCCATCTTTTTTCTAATTTCTATGGGCAGTGCATCCCTCGTCTGCGTTT
CTGCCTCACACCTGTATACGTACATATGCAGCAAAGTGGAGAACTGAGCA
AAGAAGTCTGCATTTCCTCGCTTGCAACAACCAAAAATGTGTCGAAAAAT
GCCAAGAAATAAAACTAGAACAGTGCAATTGAAGTCACCACCTGCTCGTT
CCTTGCCAGTGCACGTCGCTCTCTTGCCAGGACGCAGATCATGAATCTCA
AACAAGGGACATAGGGACCAGAAACAAATACCACACCACCACGTCCGATT
GGTTATTGTGCTCTGCCACCTCGTGCTGGACGGATGGCACTACCAACAGC
GTCTAGCCTGATACATTTGGATTTTCCAATCGGGGTAGTGGTTGGCGCGA
GGCCATGGTCGCGCGTCCGAGCCCGAGCCTTGCCCCCCCCACCCCTCGTG
CCAGGCGCATTTTTAGCATCTCGACACGGCATCACTGTACTTTATGCGCA
TTAAATGAGCCACCACGCTAAATTGGTGGACACACAGTCTGTGTCCTTGG
GTGCCATGCCTTCAATCTTGATGCACGTCACACTGAACATCATGTGTCAG
TGCCACGAAGGATATTTTCGCTTTTCCCTCACATGTATTTACACGTCGAT
GCATGCACTTATTTCCGCCTCGCGTTCTACCCTACCACACAGCCACAAGC
AACAGGTCGGAACAAACCTTGTCCGTCTTCAGACAACAATGTCCTCGCGA
AGGCACTATTCAGATGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGT
CTTCACGGATGAGGAGATGGGCGGCGAGAGTAGCAACACCGCCAACACAA
AGGTGAATCCAAACAGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGAC
GGCAACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGA
CGACGCCGACAGGGAGTATTATCGACCCAGTCCAACCCCACGCCATGTGC
CATCAACTACCAACAACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGA
CGCTCGGACACAATCTGCGGCATgtacgtactgtataatgggaatcggtg
gacttcttgctgtgatgatcgctagtgtgaccatgccaatgagacctacc
ctcctcaactttctccctcctttccttcctgccttcctctcacctctctt
cagGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTTTTCTTGCTCTAG
CCATTACAATTGCGGTATCGGTTATCATGGGTTGGAACATGGTCGCGCCA
CGCGTGCAAATGgtaaggagggaggaagaagcgagagcgtgagggaggga
tggagggtggggacgaaatggattataacttctgaagatgggacagttaa
attccctttttctttctctctgttcgtcttgaaggtatccctcatccact
tacaccctctttccctccctccaagGTGAACTTCCAATTTCCCCTTCCCT
ATCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTC
CTCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCA
AATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCC
CTGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAG
AGCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTAT
CTCCAACGCTATCATATCGgtacgctagcttcatgtccatgcgcccgccc
tccctccctccctccctcctcccctcccttcctccctcccgttccccagg
ccccgacgagtctatgccctcgcaattttatttacaagcgcactacttga
caactcatgcattatttccctttcaacccctctctcttctctctcccccc
tcagGGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGTCCGTG
CCTGGGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCGACTGC
ACCATCATGAGGAGGTGGGGCGTCAATCCCGTCACCACCAGCGACTGCTT
TGGACACTTCATACGGTAGTCGCGTCACGGACAGTGAATGCCACGGACTT
GTTGTTGGTCAAGGGGCGAAGGAGGGAGAGATGAAGGGAGGGAGGAAACT
TCTGGAGTATTTGACTGGGAAAAGAGACAGAAAAGAGGATCCAGTGACAT
GACGGAGAGAAGGAGAAAGGAAAAAGAAAAAAGACAGATGAATATGAACG
AGAAGAAATGAGAAGAAAAAGAAGAGGAGGAGGAGGAAAAAAGATGAAGA
AGAAGGAAGGGGAGGAGAAGGGAAAGAAGAAGAAAAAGAAAAATAAGAGA
GAGAATAAGAGGGAGAGGAAGAGGAAGTGAAAGCGAGGAGGACGAAGAGA
GAGAGGAAGAGGACAAAAGTATCTACTGTCGAGAGAGGATGAAAGTAACT
ACTGTTGCCCTTAGCAAGTGGGGCAATGATGCCCTCAATATATAACCAGG
CCAGATGTGCTCACTACCACGTACCTACCGGTGATAGCTGCATTTGGTTG
CCAGGGAGAGACAAAGGGAGGAAGGGGGGACGGAGGGACGGAGGTTATGC
GGCTTTGAAAGCTTCATAACTCTTTTTCCCTGTGTCCTATGGGAGGACAT
ATACCTATGGGAGGACATATACTATTTTACAATTAACTTATGAATTATGT
GAGTGAAGAGAGCGCCAATTATGTATTGATTGAATGAAGACAAAGCAACA
CGTGCAGACAGTTGGGAAAGGATGTCCGGGTGCGACACTTGAAAAAGGGG
CCAGGTTAGCGATTGAGAGAATGTAAGTAAGAGTCAAACGAAGGTGAGAG
AGCGAATGAACTCAGAACGGCGACTGTTCCGCTGGAGAAGGATGCTGCTG
CTGCGGTTGCTGCTACGGCCAGCCCTGTCGCACATCACATGGTGACAGAA
GCGTGGATGCGGAGATCAGCCTTTTGCTCCAGTGCATGAAATCAATGCTC
AAACATCGGGAAGATTGCCGTGGCGTGTCTGTGCTGACTCTCTTGCTTTT
TGATGATGGAAGGGCAAGTTTGATCCGAAGTACTGAGCAGTGAGAGCTAT
ACCAAGTGACATAAAAAAAGTTATTTACATATATGTGGTGAAACACGAAA
AGAATAAAGAGAGAAAGACGACTGAAATGCATGGCTGAACTCTTAAGACG
AAAATATCGTACAATATTGCGT
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protein sequence of NO08G04370.1

>NO08G04370.1-protein ID=NO08G04370.1-protein|Name=NO08G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MSHHAKLVDTQSVSLGAMPSILMHVTLNIMCQCHEGYFRFSLTCIYTSMH
ALISASRSTLPHSHKQQVGTNLVRLQTTMSSRRHYSDELPSSMHAHTAVF
TDEEMGGESSNTANTKVNPNSLGSPRSHQNYDGNAGKWVDGRSSRLPWDD
ADREYYRPSPTPRHVPSTTNNFEIRALPERERRSDTICGMPKWVASIVFL
GFLALAITIAVSVIMGWNMVAPRVQMVNFQFPLPYPYSDATGRIPVISTL
LLSNFNRFRITTWPTTMQIFALPSRSPASLLATAPVQFMQLAPHQKSQPM
QSFFDISNINGVEGGVFISNAIISGDVNYMYTTSIIRVRAWALNFIPVTR
SYKSDCTIMRRWGVNPVTTSDCFGHFIR*
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Synonyms
Publications