NO08G04350, NO08G04350 (gene) Nannochloropsis oceanica

Overview
NameNO08G04350
Unique NameNO08G04350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2356
Alignment locationchr8:1270671..1273026 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein S10p/S20e family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1270671..1273026 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036838Ribosomal_S10_dom_sf
IPR027486Ribosomal_S10_dom
IPR001848Ribosomal_S10
Homology
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: NP_001093382.1 (uncharacterized protein LOC100101334 [Xenopus laevis] >AAI46637.1 LOC100101334 protein [Xenopus laevis])

HSP 1 Score: 239.2 bits (609), Expect = 6.700e-60
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 121
            MADIVKPK LAEDDQQIHRIRITLTSLNVKNLEKVCD+LKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN
Sbjct:    1 MADIVKPKALAEDDQQIHRIRITLTSLNVKNLEKVCDVLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 120
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: EWM26907.1 (ribosomal protein s20 [Nannochloropsis gaditana])

HSP 1 Score: 208.0 bits (528), Expect = 1.700e-50
Identity = 102/120 (85.00%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 121
            MADIVKPKVLAE+++QIHRIRITLTSLNVK+LEKVC+ LK RA++H++HLKVAGPVRLPTK LKITTRKSP GEGTNTWDR+QMRIHKRIIDLH++SDAVK IT+IVIEPGVEVEITINN
Sbjct:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: XP_024573105.1 (40s ribosomal protein s20 [Plasmopara halstedii] >CEG36736.1 40s ribosomal protein s20 [Plasmopara halstedii])

HSP 1 Score: 169.5 bits (428), Expect = 6.500e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK +  ++ +IHRIRITLTS NVKNLEKVC  LK+ A+D N  LKV+GPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:    1 MSLVSKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKN--LKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTI 116
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: ETI36183.1 (40S ribosomal protein S20 [Phytophthora parasitica P1569] >ETK76406.1 40S ribosomal protein S20 [Phytophthora parasitica] >ETL83074.1 40S ribosomal protein S20 [Phytophthora parasitica] >ETM36293.1 40S ribosomal protein S20 [Phytophthora parasitica] >ETP34116.1 40S ribosomal protein S20 [Phytophthora parasitica P10297] >KUF97286.1 hypothetical protein AM588_10006600 [Phytophthora nicotianae] >KUF98187.1 40S ribosomal protein S20 [Phytophthora nicotianae] >OWY90353.1 40S ribosomal protein S20 [Phytophthora megakarya])

HSP 1 Score: 169.1 bits (427), Expect = 8.500e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK +  ++ +IHRIRITLTS NVKNLEKVC  LK+ A+D N  LKV+GPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKN--LKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTI 116
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: ETL29846.1 (40S ribosomal protein S20 [Phytophthora parasitica] >ETO64905.1 40S ribosomal protein S20 [Phytophthora parasitica P1976] >ETP06007.1 40S ribosomal protein S20 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 169.1 bits (427), Expect = 8.500e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK +  ++ +IHRIRITLTS NVKNLEKVC  LK+ A+D N  LKV+GPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:   52 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKN--LKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTI 167
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: XP_008896121.1 (40S ribosomal protein S20 [Phytophthora parasitica INRA-310] >ETN18450.1 40S ribosomal protein S20 [Phytophthora parasitica INRA-310])

HSP 1 Score: 169.1 bits (427), Expect = 8.500e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK +  ++ +IHRIRITLTS NVKNLEKVC  LK+ A+D N  LKV+GPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:   28 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKN--LKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTI 143
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: CCI43303.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 168.3 bits (425), Expect = 1.400e-38
Identity = 87/118 (73.73%), Postives = 99/118 (83.90%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK L  ++  IHRIRITLTS NVKNLEKVC  LK+ ALD N  LKV+GPVRLPTK L+ITTRKSPCGEGTNTWDR++MRIHKRI+DLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:  406 MSLLNKPKNLEPENVPIHRIRITLTSRNVKNLEKVCADLKRGALDKN--LKVSGPVRLPTKFLRITTRKSPCGEGTNTWDRFEMRIHKRILDLHAPSDVVKQITSISIEPGVEVEVTI 521
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: XP_009521572.1 (hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae] >EGZ26284.1 hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae])

HSP 1 Score: 167.5 bits (423), Expect = 2.500e-38
Identity = 84/118 (71.19%), Postives = 100/118 (84.75%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+ + KPK +  ++ +IHRIRITL+S NVKNLEKVC  LK+ A+D N  LKV+GPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLH+ SD VK ITSI IEPGVEVE+TI
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKN--LKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTI 116
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: XP_008866960.1 (40S ribosomal protein S20 [Aphanomyces invadans] >ETW04004.1 40S ribosomal protein S20 [Aphanomyces invadans])

HSP 1 Score: 166.4 bits (420), Expect = 5.500e-38
Identity = 85/113 (75.22%), Postives = 95/113 (84.07%), Query Frame = 0 
Query:    6 KPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            KP     ++ +IHRIRITLTS NVKNLEKVC  LKK A+D N  LKVAGPVRLPTK L++TTRKSPCGEGTNTWDR++MRIHKRIIDLHS S+ VK ITSI IEPGVEVE+TI
Sbjct:    8 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKN--LKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTI 118
[Close]
BLAST of NO08G04350 vs. NCBI_GenBank
Match: CBJ29892.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 165.2 bits (417), Expect = 1.200e-37
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 0 
Query:    1 MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITI 119
            M+  VK K L +++ ++HRIRITLTS NVKNLEKVC  LKK A++  + LKV+GPVRLPTK LKI TRKSPCGEGTNTWDR++MRIHKRI+DLHS S+ VK ITSI IEPGVEVE+TI
Sbjct:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVE--KKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTI 116
The following BLAST results are available for this feature:
BLAST of NO08G04350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
NP_001093382.16.700e-6098.33uncharacterized protein LOC100101334 [Xenopus laev... [more]
EWM26907.11.700e-5085.00ribosomal protein s20 [Nannochloropsis gaditana][more]
XP_024573105.16.500e-3972.0340s ribosomal protein s20 [Plasmopara halstedii] >... [more]
ETI36183.18.500e-3972.0340S ribosomal protein S20 [Phytophthora parasitica... [more]
ETL29846.18.500e-3972.0340S ribosomal protein S20 [Phytophthora parasitica... [more]
XP_008896121.18.500e-3972.0340S ribosomal protein S20 [Phytophthora parasitica... [more]
CCI43303.11.400e-3873.73unnamed protein product [Albugo candida][more]
XP_009521572.12.500e-3871.19hypothetical protein PHYSODRAFT_285181 [Phytophtho... [more]
XP_008866960.15.500e-3875.2240S ribosomal protein S20 [Aphanomyces invadans] >... [more]
CBJ29892.11.200e-3771.19conserved unknown protein [Ectocarpus siliculosus][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006531NSK006531Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04350.2NO08G04350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04350.1NO08G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583447gene_3787Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g9gene3639Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04350.2NO08G04350.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04350.1NO08G04350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04350 ID=NO08G04350|Name=NO08G04350|organism=Nannochloropsis oceanica|type=gene|length=2356bp
AAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCCTCCACCCTTCCTA
CTGCTTCTTACACAACACAGCACGCATACACATGAGTCTGCTTTAATGTG
CCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTGGTGTTGGTCTTTA
AAGGCGTGAGTGACGACGGTCTCTCTTTCTCCACCTCATCCTCCTTCCTC
CAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTCACATCTGCATGCT
CCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGCACATCACACCGCA
CACACATATACAACGGTCTTCATTTCTTTATTAGCCCGCCGGATCAGgta
cgtttggacccggggaatggatgggtggggggatggaatcgtggaatgaa
atggtgatgaacggcctgagaactcatgcctctcgaattcctccatccct
cgcttgactcaacacagGTTACCGCTGCTGCTTTCGTGCTCCAGGTACGT
CGAAGGGCATACAGGGTTGGAGGAGGAAGGAATGGGGAATAAAGAGCTGC
CTCCTGCTTATGCCAAAGAGAGGAAGGGGTGGAGGGGGTCCTGAGCGCCT
GCACCATGGGGGACGGGGAGGGGGGGCTGCCTATAGACCTAGGATTAAAA
ACGTTAGTTCAAGGCATATCGTCGCCGGTCCCAGAGGGGCCTCCGTGCTT
CTGATGCGGACTTATAACTACTTCCTGTGTCGATGAGGTCTCTGCTTGCT
GTTAGAGTCTGCGGTGATTGTGGCATGCATGTAGCAGAGGTTAAGAGAAG
GGAGGAAGAGACGGAGGGATGCTTTAAGGTGCTCTTGACAATTCTCGAGA
GTACATTGAGGAGAGTCGTACTTCCTCTTTATAAGGTCTCGTCTTCCGGT
AGGACATGGATGGGAATTTATCACTGATCCCTCCCTTCCGTCCTCCCTCC
GTTCACTCCTCATCGCCATCCTTAACAGCGCCTCGTCCAGCACTCCTTCC
TTTTTTTTCACCTCTCTTTCTTTGAACATGGCCGACATTGTCAAGCCCAA
GGTCCTCGCTGAGGATGACCAGCAGgtaggaagtgagggagggagaggag
ggggggaagaaaggaaaggaatcgagggagtagtaggaaagtgatgggaa
gcggaggattatgctttttaagacgtggtttcctcgcacgaccgatacgc
gcggcgaatgaaaatgacggatgaaaagggttggggcaatggtggacacg
gcctcgccgtgttcctgcctctggaggggcatgtgctcgacgacaattac
catgggcgattcccgccactaacctccaccccccgccctccctgatccct
cagATCCACCGCATCCGCATCACTCTGACATCCCTGAACGTGAAGAACTT
GGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACCAGC
ACCTCAAGGTGGCGGGACCCGTCCGgtaagaggggaggaagggagagaga
aagagaggaaaagagggtaggagcgatgagtgaatgggagggctgagggg
ctatgaatgcgttgactgctcgaaatcggaagcttgcactttgctagccc
caagtcgaagaggcccaagacaacacggccaaggtcagactggcactcga
tggcacgaacgcggattcaacattactccgtggcaccctatttccttccc
tcccttcctccctctcagCCTGCCCACCAAGACGCTGAAGATCACGACCC
GCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGgta
cttgccttcgaggaggacaaaacgaggggaggacgatgagggaagacagg
atccatcagactttgtgcagcgggtactgattgtcgcttgccttctcggt
tttctgacactggcgaataagcctcggaagaagcttctctttacatgccc
actcactaacccctccctccctccccccaccctttccccccctccctctc
tccttccctctctccattcctctttccacagATGCGCATCCACAAGCGCA
TCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGTCCATC
GTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAAGCCTT
GGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTTGGGTCTGCCTTTCTCT
TTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGGTTGGGGTGGGAGAGCG
AGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGAAGCTTGTTCTGTTTGT
GCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTTGAAAAGACCAAGAAAT
AGAAGA
back to top

protein sequence of NO08G04350.2

>NO08G04350.2-protein ID=NO08G04350.2-protein|Name=NO08G04350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHL
KVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAV
KHITSIVIEPGVEVEITINN*
back to top

protein sequence of NO08G04350.1

>NO08G04350.1-protein ID=NO08G04350.1-protein|Name=NO08G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHL
KVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAV
KHITSIVIEPGVEVEITINN*
back to top
Synonyms
Publications