NO08G04290, NO08G04290 (gene) Nannochloropsis oceanica

Overview
NameNO08G04290
Unique NameNO08G04290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length682
Alignment locationchr8:1254624..1255305 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1254624..1255305 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G04290 vs. NCBI_GenBank
Match: EWM26909.1 (hypothetical protein Naga_100103g3 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 1.100e-22
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0 
Query:    1 MDDTKVQVDVGLHEGLLSQYANLHEEVAPRFRQAVDDVRDGLELMIGLGALGVGLYTVSRLLHATYWVLDRRTEKSTRCWKQVAALVLGTVV 93
            MDDTK+ +++GLHE LLSQY  L  E++PR R+ ++DV +GLE MI LGALGVG Y+ SRLL+ATYWVLD R+ KSTR  KQV AL  G+V+
Sbjct:    1 MDDTKMDINIGLHEDLLSQYDILSRELSPRLRRGLNDVYEGLEWMITLGALGVGFYSASRLLYATYWVLDCRSRKSTRWRKQVLALSFGSVM 92
The following BLAST results are available for this feature:
BLAST of NO08G04290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26909.11.100e-2261.96hypothetical protein Naga_100103g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006539NSK006539Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04290.1NO08G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583415gene_3780Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g3gene3645Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04290.1NO08G04290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04290 ID=NO08G04290|Name=NO08G04290|organism=Nannochloropsis oceanica|type=gene|length=682bp
GTTTACGGCCTTTCTCCCCCCACAATCCAAATAAATAAATGAAAAACACA
TCTATGAATGAATATGTGGCGACAAAACATAACCGCTCACTTAAATGGAA
CCTCCAGCATCACTGCAATACAGGCATAGCCTAGAACTGCAAAGCTTGGG
GGCCTTCTCTATCTGAAAGGAGCAAGGGGTACCATCAGCCATGGATGATg
tacgtactgaggaaagagtaactcaacaaaacactttgaaacatgtgcta
acaattcacccattcattcatgcagACGAAAGTGCAGGTGGACGTGGGAC
TACACGAAGGTCTTCTCTCCCAATATGCCAACCTGCACGAAGAGGTCGCC
CCGCGATTTCGCCAGGCAGTTGACGACGTGCGTGACGGGTTGGAGCTGAT
GATCGGCCTAGGGGCGTTGGGTGTTGGTCTTTACACAGTCTCCCGCCTCC
TCCATGCCACATACTGGGTCTTGGACCGTCGGACGGAGAAGAGTACGCGG
TGTTGGAAGCAAGTGGCGGCTCTGGTCCTGGGGACAGTGGTGATTGGCGG
GGTGTGTACGTTTGGGGTAAGGATGACAAGAGTAACTATGCTTGAAGAAA
GGCGTGGAGGAGGAAAAAAAGGGAGATAGAGGAATGGAAAAAAAAATGTT
TTGTACGAAATAAATTGTAAAGTTAGAATACG
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protein sequence of NO08G04290.1

>NO08G04290.1-protein ID=NO08G04290.1-protein|Name=NO08G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MDDTKVQVDVGLHEGLLSQYANLHEEVAPRFRQAVDDVRDGLELMIGLGA
LGVGLYTVSRLLHATYWVLDRRTEKSTRCWKQVAALVLGTVVIGGVCTFG
VRMTRVTMLEERRGGGKKGR*
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Synonyms
Publications