NO08G04280, NO08G04280 (gene) Nannochloropsis oceanica

Overview
NameNO08G04280
Unique NameNO08G04280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr8:1253240..1254412 -

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Properties
Property NameValue
DescriptionFucose mutarotase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1253240..1254412 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005996monosaccharide metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0048029monosaccharide binding
GO:0016853isomerase activity
GO:0030246carbohydrate binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023750RbsD-like
IPR007721RbsD_FucU
Homology
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_006800760.1 (PREDICTED: fucose mutarotase-like [Neolamprologus brichardi])

HSP 1 Score: 167.2 bits (422), Expect = 4.100e-38
Identity = 89/150 (59.33%), Postives = 112/150 (74.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ IP VLSP LL+ LA MGHGDE+VLADANFPA+SI +  P   + ADG  IP L++A+++LLPLD   P PA VM ++      G   P+WD YK++L+ A G  ++LE +ERFAFY R+K+A+AVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGIPSVLSPELLYALAKMGHGDELVLADANFPASSICACGPKE-IRADGLGIPRLMEAVLKLLPLDTYVPSPAAVMDLVDSDKQRGLAVPVWDTYKQLLSQA-GSQVSLEKVERFAFYERAKKAYAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_004555951.1 (fucose mutarotase isoform X1 [Maylandia zebra] >XP_005743976.1 PREDICTED: fucose mutarotase isoform X1 [Pundamilia nyererei] >XP_005940755.1 PREDICTED: fucose mutarotase isoform X1 [Haplochromis burtoni])

HSP 1 Score: 165.6 bits (418), Expect = 1.200e-37
Identity = 88/150 (58.67%), Postives = 112/150 (74.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ IP VLSP LL+ LA MGHGDE+VLADANFPA+SI +  P   + ADG  IP L++A+++LLPLD   P PA VM ++      G   P+WD Y+++L+ A G  ++LE +ERFAFY R+K+A+AVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGIPSVLSPELLYALAKMGHGDELVLADANFPASSICACGPKE-IRADGLGIPRLMEAVLKLLPLDTYVPSPAAVMDLVDSDKQRGLAVPVWDTYEQLLSQA-GSQVSLEKVERFAFYERAKKAYAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_009050293.1 (hypothetical protein LOTGIDRAFT_201494 [Lottia gigantea] >ESO99013.1 hypothetical protein LOTGIDRAFT_201494 [Lottia gigantea])

HSP 1 Score: 165.2 bits (417), Expect = 1.600e-37
Identity = 84/146 (57.53%), Postives = 107/146 (73.29%), Query Frame = 0
Query:    4 LKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDE-TAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGV 149
            LK+IP V+SP LLHVLA MGHGD+IV ADA+FP+ S+A      LV  DG  IP LL+ +++L PLD   A PA VM  +P     G K P+WD+Y++I+  AEG++I+ E IERF FY R+K+AFAVV TGETA+YGNLILKKG+
Sbjct:    3 LKKIPNVISPDLLHVLAQMGHGDDIVFADAHFPSNSVAKAQGAILVRCDGLSIPPLLEGVLELFPLDPYVAQPAGVMDPVPSDKEKGIKVPVWDKYQEIINKAEGKEISFEKIERFEFYERAKKAFAVVHTGETAIYGNLILKKGL 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_022060971.1 (fucose mutarotase [Acanthochromis polyacanthus])

HSP 1 Score: 163.7 bits (413), Expect = 4.500e-37
Identity = 90/150 (60.00%), Postives = 110/150 (73.33%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ +P VLSP LL+ LA MGHGDEIVLADANFPA+SI +  P   + ADG  IP LL+AI++LLPLD   P PA VM ++          P+W+ Y+++L+HA G    LE +ERFAFY R+K+AFAVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGVPSVLSPELLYALAKMGHGDEIVLADANFPASSICACGPKE-IRADGLGIPQLLEAILKLLPLDTHVPCPAAVMDLVDSDKQRCLAVPVWETYRELLSHA-GSQSPLEVVERFAFYERAKKAFAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_023266361.1 (fucose mutarotase [Seriola lalandi dorsalis])

HSP 1 Score: 163.7 bits (413), Expect = 4.500e-37
Identity = 89/150 (59.33%), Postives = 107/150 (71.33%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ IP VLSP LL+ LA MGHGDE+VLADANFP++SI +H P   + ADG  IP LL+AI++LLPLD   P PA VM ++          P+WD Y ++L  A G    LE +ERF FY R+K+AFAVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGIPSVLSPELLYALAKMGHGDELVLADANFPSSSICAHGPKE-IRADGVGIPQLLEAILKLLPLDTYVPSPAAVMDLVDSDKQRSLAVPVWDTYTQLLGQA-GSQTPLEKVERFVFYERAKKAFAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_019808423.1 (PREDICTED: fucose mutarotase [Bos indicus] >DAA14828.1 TPA: protein fucU homolog [Bos taurus])

HSP 1 Score: 162.5 bits (410), Expect = 1.000e-36
Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDE-TAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK +P +LSP LL  LA MGHGDEIVLAD NFP++SI    P   + ADG  IP LL+A++QLLPLD     PAMVM ++P    +G  TP+W  Y+ IL+ A G + +L  +ERFAFY R+K+AFAVVATGETALYGNLILKKGV+
Sbjct:    1 MVVLKGVPALLSPELLFALARMGHGDEIVLADVNFPSSSICRGGPEE-IRADGLGIPQLLEAVLQLLPLDTYVQSPAMVMELVPSDRKSGLLTPVWTSYQSILSRA-GYEFSLGMVERFAFYERAKKAFAVVATGETALYGNLILKKGVL 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_022618691.1 (fucose mutarotase [Seriola dumerili])

HSP 1 Score: 162.5 bits (410), Expect = 1.000e-36
Identity = 88/150 (58.67%), Postives = 107/150 (71.33%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ IP VLSP LL+ LA MGHGDE+VLADANFP++SI +H P   + ADG  IP LL+AI++LLPLD   P PA VM ++          P+WD Y ++L  A G    LE +ERF FY R+K+A+AVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGIPSVLSPELLYALAKMGHGDELVLADANFPSSSICAHGPKE-IRADGVGIPQLLEAILKLLPLDTYVPSPAAVMDLVDSDKQRSLAVPVWDTYTQLLGQA-GSQTPLEKVERFVFYERAKKAYAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: NP_001004530.1 (fucose mutarotase [Danio rerio] >Q7ZZ03.1 RecName: Full=Fucose mutarotase >AAH81387.1 Si:ch211-217g15.2 [Danio rerio])

HSP 1 Score: 162.2 bits (409), Expect = 1.300e-36
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M +LK IP VL+P LL+VLA MGHGDE+VLADANFP +S+    P   + ADG  IP LL AI++L PLD     A VM ++P     G K PIWD+Y ++L  A G D  ++ +ERFAFY R+K+AFAVVATGETALYGNLI+KKGVI
Sbjct:    1 MVILKGIPSVLTPELLYVLAQMGHGDELVLADANFPTSSVCKCGPVE-IRADGVRIPELLKAILKLFPLDTYDESAAVMDLVPSDLLKGLKVPIWDQYSELLKQA-GSDGNMKPVERFAFYERAKKAFAVVATGETALYGNLIIKKGVI 147          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_020735686.1 (fucose mutarotase [Odocoileus virginianus texanus])

HSP 1 Score: 162.2 bits (409), Expect = 1.300e-36
Identity = 90/150 (60.00%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDE-TAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK +P +LSP LL  LA MGHGDEIVLAD NFP++SI    P   + ADG  +P LL+A++QLLPLD     PAMVM +MP     G  TP+W  Y+ ILA A G + +L  +ERFAFY R+K+AFAVVATGETALYGNLILKKGV+
Sbjct:    1 MVVLKGVPALLSPELLFALARMGHGDEIVLADVNFPSSSICRGGPEE-IRADGLGVPQLLEAVLQLLPLDTYVESPAMVMELMPSDRKRGLLTPVWTSYQSILAKA-GYEGSLGMVERFAFYERAKKAFAVVATGETALYGNLILKKGVL 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_023145348.1 (fucose mutarotase [Amphiprion ocellaris])

HSP 1 Score: 161.8 bits (408), Expect = 1.700e-36
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VL+ IP VLSP LL+ LA MGHGDEI+LADANFPA+SI +  P   + ADG  IP LL+AI++LLPLD   P PA VM ++          P+W+ Y+++L HA G    LE +ERFAFY R+K+AFAVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLRGIPSVLSPELLYALAKMGHGDEIMLADANFPASSICACGPKE-IRADGLGIPQLLEAILKLLPLDTYVPCPAAVMDLVDSDKQRCLAVPVWETYRELLNHA-GSQSPLEMVERFAFYERAKKAFAVVATGETALYGNLILKKGVI 148          
The following BLAST results are available for this feature:
BLAST of NO08G04280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_006800760.14.100e-3859.33PREDICTED: fucose mutarotase-like [Neolamprologus ... [more]
XP_004555951.11.200e-3758.67fucose mutarotase isoform X1 [Maylandia zebra] >XP... [more]
XP_009050293.11.600e-3757.53hypothetical protein LOTGIDRAFT_201494 [Lottia gig... [more]
XP_022060971.14.500e-3760.00fucose mutarotase [Acanthochromis polyacanthus][more]
XP_023266361.14.500e-3759.33fucose mutarotase [Seriola lalandi dorsalis][more]
XP_019808423.11.000e-3659.33PREDICTED: fucose mutarotase [Bos indicus] >DAA148... [more]
XP_022618691.11.000e-3658.67fucose mutarotase [Seriola dumerili][more]
NP_001004530.11.300e-3658.39fucose mutarotase [Danio rerio] >Q7ZZ03.1 RecName:... [more]
XP_020735686.11.300e-3660.00fucose mutarotase [Odocoileus virginianus texanus][more]
XP_023145348.11.700e-3660.00fucose mutarotase [Amphiprion ocellaris][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006541NSK006541Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04280.3NO08G04280.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04280.2NO08G04280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04280.1NO08G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583405gene_3779Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g2gene3646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04280.3NO08G04280.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04280.2NO08G04280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04280.1NO08G04280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04280 ID=NO08G04280|Name=NO08G04280|organism=Nannochloropsis oceanica|type=gene|length=1173bp
ACAGACCCCGCCGCTGCAGCATGACGGTCCTAAAGCGCATCCCCAAGGTA
TTGAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGACATGGCGATGA
AATTGTTCTTGCAGgtacattgcaaaaggcggggttcgaggaagcctcca
actttctctcaggaggtcgggatggagtggcccgcgcagtgtgcgtgatg
agcctctccttttagtatcgcattgcagagggaggctcattattacactt
tcaattggaaaagtaaccttggtaaatcccgtgatttatgcaacctcccg
ccaatctcctgtaccatctcagACGCCAATTTCCCCGCCGCCTCTATCGC
CTCCCACACGCCGGGCGGGCTTGTCAATGCGGACGgtgcgtaagttacct
tccagcttttcagccttctccaatccctacatgcttgttgatccgacttc
gcctcctcttatacacattttgcgtgcaccctcaaagGCAACGACATTCC
TACCTTGCTGGACGCCATCATGCAGCTTCTGCCCTTGGATGAGACCGCAC
CGCCTGCCATGGTCATGGGCATGgtgagtacgcttcctttttctcgcttt
tttctttctatggctgactaacgatatcagaatagactgacaggaggaat
taatgtatcataatctttacgtcgagatcacttcttttgcttggtccccg
ttctcggcaagATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCATT
TGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGC
TTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGT
TTGCCGTAGTGGCGACCGGgtaaggagaggagagagggagggtgaatagc
ttttcggcatcatgtccaaaaatcactagctaactcattcaatccctctc
ctcgttcatccatccacccagAGAAACTGCGTTATACGGGAATCTCATTT
TGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATTGCCGACTGTACGGCA
AGGATGGAGGGGCAGTGGAATTTATGGAAAAGAAGCTTATGATAATACTA
CCTCTCACAGTTGGAGTAACGATTGTACATGTGGACTTGTCAAAAAAGAA
AATTTTGGGTTTGAAGCTACGAC
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protein sequence of NO08G04280.3

>NO08G04280.3-protein ID=NO08G04280.3-protein|Name=NO08G04280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMVSTLPFSRFFLSMAD*
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protein sequence of NO08G04280.2

>NO08G04280.2-protein ID=NO08G04280.2-protein|Name=NO08G04280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMVSTLPFSRFFLSMAD*
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protein sequence of NO08G04280.1

>NO08G04280.1-protein ID=NO08G04280.1-protein|Name=NO08G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKK
ILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIG
TSK*
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Synonyms
Publications