NO08G04280, NO08G04280 (gene) Nannochloropsis oceanica

Overview
NameNO08G04280
Unique NameNO08G04280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr8:1253240..1254412 -

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Properties
Property NameValue
DescriptionFucose mutarotase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1253240..1254412 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005996monosaccharide metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0048029monosaccharide binding
GO:0016853isomerase activity
GO:0030246carbohydrate binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023750RbsD-like
IPR007721RbsD_FucU
Homology
BLAST of NO08G04280 vs. NCBI_GenBank
Match: EWM26898.1 (fucose mutarotase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 7.900e-66
Identity = 128/152 (84.21%), Postives = 140/152 (92.11%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIGTS 153
            MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN+DGNDIPTLL AIMQLLPLDETAPPAMVM MMP H A GWKT IWD YK+I++  EGR++AL  +ERF FY+RSKQA+AV+ATGETALYGNLILKKGVIG++
Sbjct:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNSDGNDIPTLLTAIMQLLPLDETAPPAMVMEMMPVHQALGWKTQIWDTYKEIVSEGEGRNVALTTVERFEFYSRSKQAYAVIATGETALYGNLILKKGVIGST 152          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_004990568.1 (RbsD or FucU transporter [Salpingoeca rosetta] >EGD77224.1 RbsD or FucU transporter [Salpingoeca rosetta])

HSP 1 Score: 190.7 bits (483), Expect = 3.500e-45
Identity = 93/152 (61.18%), Postives = 116/152 (76.32%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIGTS 153
            MTVLK IP +L P LL  LA MGHGDE+VLADANFPA S+ + TP  ++  D   +P LL AI++LLPLDET+ P  +M +MPEH AAGW+TPIW++Y+ I+A  E R +  E +ERFAFY R+K+AF VVATGE ALY NLILKKGVIG++
Sbjct:    1 MTVLKGIPSILPPELLLALAKMGHGDELVLADANFPAESVGASTPCSVIRCDALGMPELLSAILKLLPLDETSCPCALMDLMPEHKAAGWQTPIWEQYRAIVAENEKRTVDFELVERFAFYERAKKAFVVVATGEQALYANLILKKGVIGST 152          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_001744656.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ90605.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 186.4 bits (472), Expect = 6.500e-44
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIGTS 153
            MT+LK IPK+L P LL  LA MGHGDE+VL DANFP+ S+ +HTP  ++  D      LL AI+Q+LPLD T  P  +M MM  H AAGWKTPIWDEYK  +  AEGR I  E +ERFAFY R+K+A+ VVATGE A Y N+ILKKG+IG++
Sbjct:    1 MTILKGIPKILPPELLFALAKMGHGDELVLGDANFPSESVGAHTPCNVIRCDALGAVDLLKAILQVLPLDTTCGPCALMEMMDMHKAAGWKTPIWDEYKAAVKEAEGRTIDFEEVERFAFYERAKKAYVVVATGEEAFYANIILKKGIIGST 152          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_003385545.1 (PREDICTED: fucose mutarotase-like isoform X2 [Amphimedon queenslandica])

HSP 1 Score: 183.0 bits (463), Expect = 7.200e-43
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M +LK IP++++P LL VLA MGHGDEIVLADANFP+ASI  H P  L+ ADG+ IP LL AI  LLPLD   P PAM+M ++     AG KTPIW++YK IL  AEG+DI  E IERFAFY R+K AFAVVATGE ALYGN+ILKKGV+
Sbjct:    1 MVILKGIPRIINPSLLSVLARMGHGDEIVLADANFPSASICRHGP-ELIRADGHAIPPLLKAITSLLPLDTYVPRPAMLMELVHNDKKAGLKTPIWEQYKSILQQAEGKDIGFEMIERFAFYERAKTAFAVVATGEEALYGNVILKKGVL 149          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_022080570.1 (fucose mutarotase-like isoform X1 [Acanthaster planci])

HSP 1 Score: 181.4 bits (459), Expect = 2.100e-42
Identity = 96/154 (62.34%), Postives = 118/154 (76.62%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIGTSK 154
            M VLK IP++LSP LLHVLA MGHGDEIVLADANFP++SI    P   + ADG+ IP LL+AI+QLLPLD   P PAMVM ++ EH  A   T +WD+++ +L  AEG+ + +E IERFAFY R+K+AFAVVATGE ALYGNLILKKGVI + +
Sbjct:    1 MVVLKGIPRILSPELLHVLAQMGHGDEIVLADANFPSSSICGAGPKE-IRADGHGIPELLEAILQLLPLDAFVPSPAMVMELVDEHKKAKLPTLVWDKFQALLDAAEGKTVKIEQIERFAFYERAKKAFAVVATGEKALYGNLILKKGVISSGQ 153          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: ACO51623.1 (fucU homolog [Rana catesbeiana])

HSP 1 Score: 172.2 bits (435), Expect = 1.300e-39
Identity = 94/150 (62.67%), Postives = 110/150 (73.33%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK IP VLSP LL+ LA MGHGDEIVLADANFP +SI+   P  L+ ADG  IP LL+AI+QL P+D   P PA VM ++      G K P+WDEYKK+L  A G +  LE +ERF+FY R+K AFAVVATGETALYGNLILKKGV+
Sbjct:    1 MVVLKGIPSVLSPELLYTLARMGHGDEIVLADANFPVSSISRSGP-ELIRADGLGIPRLLEAILQLFPMDTYVPEPAAVMDLVDSDKEKGLKVPVWDEYKKLLCKA-GCEAPLEKVERFSFYERAKNAFAVVATGETALYGNLILKKGVL 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_021378658.1 (fucose mutarotase-like [Mizuhopecten yessoensis] >OWF38304.1 Fucose mutarotase [Mizuhopecten yessoensis])

HSP 1 Score: 170.6 bits (431), Expect = 3.700e-39
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    4 LKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            LK IP VLSP LLHVLASMGHGDE+VLADANFP AS+    P   V ADG DIPTL+DAI+QLLPLD     P  +M ++P     G +TP+W++Y  I    EG+ I ++ +ERFAFY R+K+AFAVV TGETALYGN+ILKKGV+
Sbjct:    3 LKLIPNVLSPNLLHVLASMGHGDELVLADANFPTASVCKSGPIE-VRADGIDIPTLMDAILQLLPLDTYVDRPIALMDLVPSDKQRGLQTPVWEKYMTIARKHEGKTIDVQLVERFAFYERAKKAFAVVHTGETALYGNIILKKGVV 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_019626459.1 (PREDICTED: fucose mutarotase-like [Branchiostoma belcheri])

HSP 1 Score: 169.9 bits (429), Expect = 6.300e-39
Identity = 92/150 (61.33%), Postives = 112/150 (74.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDE-TAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK IP++LSP LL+VLA MGHGDEIVLADANFP +S+ S  P   V ADG+ IP LL A++QLLP+D     PA VM ++P     G KTP+WD Y+++L  + G    LE +ERFAFY R+K+AFAVVATGETALYGN+ILKKGVI
Sbjct:    1 MVVLKGIPRILSPELLYVLARMGHGDEIVLADANFPTSSVCSSGP-IQVRADGHSIPDLLKAVLQLLPMDTYVESPAAVMDLVPGDKEKGLKTPVWDTYRELLKES-GCTAPLEQVERFAFYDRAKKAFAVVATGETALYGNIILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_018419608.1 (PREDICTED: fucose mutarotase isoform X1 [Nanorana parkeri])

HSP 1 Score: 167.9 bits (424), Expect = 2.400e-38
Identity = 92/150 (61.33%), Postives = 109/150 (72.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDETAP-PAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK IP VLSP LL+ LA MGHGDEIVLADANFP +SI+   P  L+ ADG  IP LL+AI+QL P+D   P PA VM ++      G   P+WDEYK++L  A G +  L+ +ERF+FY R+K AFAVVATGETALYGNLILKKGVI
Sbjct:    1 MVVLKGIPSVLSPELLYTLARMGHGDEIVLADANFPVSSISRSGP-ELIRADGLGIPRLLEAILQLFPMDTYVPEPAAVMDLVDSDKEKGLTVPVWDEYKRLLCKA-GCEAPLKKVERFSFYERAKNAFAVVATGETALYGNLILKKGVI 148          
BLAST of NO08G04280 vs. NCBI_GenBank
Match: XP_002607906.1 (hypothetical protein BRAFLDRAFT_114228 [Branchiostoma floridae] >EEN63916.1 hypothetical protein BRAFLDRAFT_114228 [Branchiostoma floridae])

HSP 1 Score: 167.5 bits (423), Expect = 3.100e-38
Identity = 93/150 (62.00%), Postives = 109/150 (72.67%), Query Frame = 0
Query:    1 MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVNADGNDIPTLLDAIMQLLPLDE-TAPPAMVMGMMPEHTAAGWKTPIWDEYKKILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVI 150
            M VLK IP++LSP LL VLA MGHGDEIV ADANFP +SI S  P   V ADG+ IP LL A+++LLPLD     PA VM ++P     G KTP+WD Y+ +L  A G    LE +ERFAFY R+K+AFAVVATGETALYGN+ILKKGVI
Sbjct:    1 MVVLKGIPRILSPELLFVLARMGHGDEIVFADANFPTSSICSSGPIE-VRADGHCIPALLKAVLELLPLDTYVESPAAVMDLVPGDKEKGLKTPVWDTYRGLLKEA-GSTTPLEQVERFAFYERAKKAFAVVATGETALYGNIILKKGVI 148          
The following BLAST results are available for this feature:
BLAST of NO08G04280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26898.17.900e-6684.21fucose mutarotase-like protein [Nannochloropsis ga... [more]
XP_004990568.13.500e-4561.18RbsD or FucU transporter [Salpingoeca rosetta] >EG... [more]
XP_001744656.16.500e-4459.21hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_003385545.17.200e-4364.67PREDICTED: fucose mutarotase-like isoform X2 [Amph... [more]
XP_022080570.12.100e-4262.34fucose mutarotase-like isoform X1 [Acanthaster pla... [more]
ACO51623.11.300e-3962.67fucU homolog [Rana catesbeiana][more]
XP_021378658.13.700e-3961.22fucose mutarotase-like [Mizuhopecten yessoensis] >... [more]
XP_019626459.16.300e-3961.33PREDICTED: fucose mutarotase-like [Branchiostoma b... [more]
XP_018419608.12.400e-3861.33PREDICTED: fucose mutarotase isoform X1 [Nanorana ... [more]
XP_002607906.13.100e-3862.00hypothetical protein BRAFLDRAFT_114228 [Branchiost... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006541NSK006541Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04280.3NO08G04280.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04280.2NO08G04280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04280.1NO08G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583405gene_3779Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g2gene3646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04280.3NO08G04280.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04280.2NO08G04280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04280.1NO08G04280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04280 ID=NO08G04280|Name=NO08G04280|organism=Nannochloropsis oceanica|type=gene|length=1173bp
ACAGACCCCGCCGCTGCAGCATGACGGTCCTAAAGCGCATCCCCAAGGTA
TTGAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGACATGGCGATGA
AATTGTTCTTGCAGgtacattgcaaaaggcggggttcgaggaagcctcca
actttctctcaggaggtcgggatggagtggcccgcgcagtgtgcgtgatg
agcctctccttttagtatcgcattgcagagggaggctcattattacactt
tcaattggaaaagtaaccttggtaaatcccgtgatttatgcaacctcccg
ccaatctcctgtaccatctcagACGCCAATTTCCCCGCCGCCTCTATCGC
CTCCCACACGCCGGGCGGGCTTGTCAATGCGGACGgtgcgtaagttacct
tccagcttttcagccttctccaatccctacatgcttgttgatccgacttc
gcctcctcttatacacattttgcgtgcaccctcaaagGCAACGACATTCC
TACCTTGCTGGACGCCATCATGCAGCTTCTGCCCTTGGATGAGACCGCAC
CGCCTGCCATGGTCATGGGCATGgtgagtacgcttcctttttctcgcttt
tttctttctatggctgactaacgatatcagaatagactgacaggaggaat
taatgtatcataatctttacgtcgagatcacttcttttgcttggtccccg
ttctcggcaagATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCATT
TGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGC
TTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGT
TTGCCGTAGTGGCGACCGGgtaaggagaggagagagggagggtgaatagc
ttttcggcatcatgtccaaaaatcactagctaactcattcaatccctctc
ctcgttcatccatccacccagAGAAACTGCGTTATACGGGAATCTCATTT
TGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATTGCCGACTGTACGGCA
AGGATGGAGGGGCAGTGGAATTTATGGAAAAGAAGCTTATGATAATACTA
CCTCTCACAGTTGGAGTAACGATTGTACATGTGGACTTGTCAAAAAAGAA
AATTTTGGGTTTGAAGCTACGAC
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protein sequence of NO08G04280.3

>NO08G04280.3-protein ID=NO08G04280.3-protein|Name=NO08G04280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMVSTLPFSRFFLSMAD*
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protein sequence of NO08G04280.2

>NO08G04280.2-protein ID=NO08G04280.2-protein|Name=NO08G04280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMVSTLPFSRFFLSMAD*
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protein sequence of NO08G04280.1

>NO08G04280.1-protein ID=NO08G04280.1-protein|Name=NO08G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKK
ILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIG
TSK*
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Synonyms
Publications