NO08G04250, NO08G04250 (gene) Nannochloropsis oceanica

Overview
NameNO08G04250
Unique NameNO08G04250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2403
Alignment locationchr8:1230550..1232952 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1230550..1232952 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007718SRP40_C
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Homology
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: CBJ28384.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.2 bits (274), Expect = 2.000e-20
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0 
Query:  428 RAPGEAFRRVDDVYWGGQIKDERLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYD 509
            R  GEAF+RV D  W G +K +   DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRG+YRGG IS+ S+S+K+D
Sbjct:  328 RTQGEAFKRVQDEQWVGGLK-KGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 407
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: GBG26538.1 (Hypothetical Protein FCC1311_027592 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-18
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0 
Query:  427 ERAPGEAFRRVDDVYWGGQIKDERLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAI 499
            +R  G+ F RVD  +W  QIKD+RL+DNSYA  FG+ G+GAKAS+ LM VRGKDFRHEKTKKKRG YRGG I
Sbjct:  340 KRQEGKRFERVDVDFWNSQIKDDRLRDNSYAAAFGNDGWGAKASDTLMRVRGKDFRHEKTKKKRGGYRGGLI 411
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_018850591.1 (PREDICTED: nucleolar and coiled-body phosphoprotein 1-like [Juglans regia])

HSP 1 Score: 94.4 bits (233), Expect = 1.100e-15
Identity = 54/90 (60.00%), Postives = 62/90 (68.89%), Query Frame = 0 
Query:  427 ERAPGEAFRRV--DDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            E   G AF+RV  D+V +     DERLKDNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG YRGG I L SHSI+++Y  DE
Sbjct:  388 EPKTGNAFQRVKSDEVVF----TDERLKDNSYWAKDGAESGYGAKAQEILGQVRGRDFRHEKTKKKRGTYRGGQIDLQSHSIRFNYSDDE 473
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_023880600.1 (suppressor protein SRP40 [Quercus suber] >POE75415.1 nucleolar and coiled-body phosphoprotein 1 [Quercus suber])

HSP 1 Score: 94.4 bits (233), Expect = 1.100e-15
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:  433 AFRRV--DDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            AF+RV  DDV +     DERLKDNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG+YRGG I L SHSIK++Y  DE
Sbjct:  406 AFQRVKADDVVF----TDERLKDNSYWAKDGAENGYGAKAQEILGQVRGRDFRHEKTKKKRGSYRGGQIDLESHSIKFNYSDDE 485
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_010687435.1 (PREDICTED: nucleolar and coiled-body phosphoprotein 1 [Beta vulgaris subsp. vulgaris] >KMT03643.1 hypothetical protein BVRB_8g189820 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-15
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 0 
Query:  427 ERAPGEAFRRVDDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            +R   +AFRRV +     +  DERL+DNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG+YRGG I L SHSIK++Y +D+
Sbjct:  360 QRTSAKAFRRVKEE--EVEFVDERLQDNSYWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSIKFNYDNDD 445
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_015574147.1 (PREDICTED: lisH domain-containing protein C1711.05 isoform X1 [Ricinus communis])

HSP 1 Score: 93.2 bits (230), Expect = 2.500e-15
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 0 
Query:  426 GERAPGEAFR----RVDDVYWGGQIKDERLKDNSYAGTFGSG-GYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            G   P  A R    +VDDV +     DERLKDNSY    G+  GYGAKA + L  VRG+DFRHEKTKKKRG+YRGG I L SHS+K++Y  DE
Sbjct:  391 GSTEPQSAIRFQRVKVDDVVF----SDERLKDNSYWAKDGAEIGYGAKAQDILGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDDE 479
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_015574148.1 (PREDICTED: lisH domain-containing protein C1711.05 isoform X2 [Ricinus communis])

HSP 1 Score: 93.2 bits (230), Expect = 2.500e-15
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 0 
Query:  426 GERAPGEAFR----RVDDVYWGGQIKDERLKDNSYAGTFGSG-GYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            G   P  A R    +VDDV +     DERLKDNSY    G+  GYGAKA + L  VRG+DFRHEKTKKKRG+YRGG I L SHS+K++Y  DE
Sbjct:  386 GSTEPQSAIRFQRVKVDDVVF----SDERLKDNSYWAKDGAEIGYGAKAQDILGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDDE 474
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_015896026.1 (PREDICTED: suppressor protein SRP40-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 2.500e-15
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:  433 AFRR--VDDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            AF+R  VD+V       DERLKDNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG+YRGG I L SHS+K++Y  DE
Sbjct:  334 AFQRVKVDEV----DFVDERLKDNSYWAKDGAESGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDDE 413
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: XP_015896097.1 (PREDICTED: suppressor protein SRP40-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 2.500e-15
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:  433 AFRR--VDDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            AF+R  VD+V       DERLKDNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG+YRGG I L SHS+K++Y  DE
Sbjct:  327 AFQRVKVDEV----DFVDERLKDNSYWAKDGAESGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDDE 406
[Close]
BLAST of NO08G04250 vs. NCBI_GenBank
Match: KCW80850.1 (hypothetical protein EUGRSUZ_C02214 [Eucalyptus grandis])

HSP 1 Score: 92.8 bits (229), Expect = 3.300e-15
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:  427 ERAPGEAFRR--VDDVYWGGQIKDERLKDNSYAGTFGS-GGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE 514
            E    +AF+R  VD+V +     D+RLKDNSY    G+  GYGAKA E L  VRG+DFRHEKTKKKRG+YRGG I L SHS+K++Y  DE
Sbjct:  421 EPTTAKAFQRIKVDEVLYA----DDRLKDNSYWAKDGAETGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDDE 506
The following BLAST results are available for this feature:
BLAST of NO08G04250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ28384.12.000e-2066.67conserved unknown protein [Ectocarpus siliculosus][more]
GBG26538.11.400e-1868.06Hypothetical Protein FCC1311_027592 [Aurantiochytr... [more]
XP_018850591.11.100e-1560.00PREDICTED: nucleolar and coiled-body phosphoprotei... [more]
XP_023880600.11.100e-1564.29suppressor protein SRP40 [Quercus suber] >POE75415... [more]
XP_010687435.11.500e-1557.95PREDICTED: nucleolar and coiled-body phosphoprotei... [more]
XP_015574147.12.500e-1556.99PREDICTED: lisH domain-containing protein C1711.05... [more]
XP_015574148.12.500e-1556.99PREDICTED: lisH domain-containing protein C1711.05... [more]
XP_015896026.12.500e-1561.90PREDICTED: suppressor protein SRP40-like isoform X... [more]
XP_015896097.12.500e-1561.90PREDICTED: suppressor protein SRP40-like isoform X... [more]
KCW80850.13.300e-1557.78hypothetical protein EUGRSUZ_C02214 [Eucalyptus gr... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006555NSK006555Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04250.1NO08G04250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629122gene_3770Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100690g1gene3650Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04250.1NO08G04250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04250 ID=NO08G04250|Name=NO08G04250|organism=Nannochloropsis oceanica|type=gene|length=2403bp
ACAGGCAAGTAAAAGCCATTGGCACATCTGTCAATAAAGTAGCCAGAGCA
TCAGACCGCCGTGCAACAAGCAACGCCATGAAGGCCCAAGAGCTCCAGCT
GCTGGGGAATATCCTGGCCTTTCTCAAGgtatgcatgcagtgtttgctgt
atattacatgtagctctatgcagatgtgggctgtatgcgcggtattactg
gcctcaagtagatgcaccatcggtggatacaccatcccacgccattcttc
cctccactccccatcctacacacagGCCAAGGGTTTCGACAAAACGGCCG
CCGTGCTTTTGAAGGAAGGCAAGGGAAAGGGGGCCTTATCCCTGACTGTG
GGAAAGCAAGACTTGCTTGCTTTGTATGTCAAGGCGGTGGGCGGGTCTGC
GGCTGCTGACTTGGGGTTAACCTCCTCCTCATCATCATCATCGTCGAGCG
AAAGTGACGGTGAGAGTGAGAGTGAGAGCGAAGGTGAAGGAGATAAGACG
AAGCAGGCCGTGGCAGGGCCTGTCACGCCCAAGGATAAGAAGAAGGGGGC
TAACACACCTGTCACCACACCTGCCGCCGCGTCTTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCC
TCTAGTGAGAGTGAGAGCGAGGACGAAGAGAAAAAGACCAAGCCGAATGC
GACTGGTCCTGCGAAAAAAAACAGTTCTGCCAAGACTGCTGCTGATGCCG
AGGAGAGTGACTCGTCTTCCTCTTCCTCCTCCAGTGACAGCGATAAGGAG
GACGAGGAGGAGGAGACGACGACGACAACGAAAAAAAAGGCACCTGCGGC
CAAGCGCAAAGCAACTTCTCCTCCTGCTACTGCTGCCTCATCTTCATCCT
CCTCATCATCAAGCGAGAGTGACGACAGCGAGGAGGAGGAGGAAGAGGTC
AAGGAGAAGAAGGCCTCCACTCCCAAGAAGCCCGCAGCGGTGCAAGTCGC
CGCCAATAAAAAACGAAAGGCCGCAGCTGATGCGCTCTCCTCCTCTTCCT
CCTCCTCGTCGTCGGAGGATGGCGATGACGAGTCCAGTTCCAGCGATGAG
GAGGAGGAGGAGGAAGAGGAGGAGGTGAAGGGGAAAGTGGAGGGAAATAA
GACGACGAAAACGAAAGCTGCTGCGCCTAATAAGAAGGCCAAGGTCGCGA
AAAGCAAAAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGCAGTTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGAGAGTGACAGgtattgaatgtaccccccccttctctcctgcc
atccttcctccctccctccctccctccctccctccctccctccctccctc
gctccctcccctaagcatcctttgctcccttcatctcctctctgagtccc
cgtgccctaccctcctcctatcccctccccctcaaacacccaccagCGAG
AGCGAGGACGAGGAGATGGTCGCCGCCCGCAAGGCCGCTGCTGAAGAGGA
TCGACGACGGAAGTCGGTGGCTGCGGCCATGGCATGGCAGGCAGCCCAGG
ATGAGAAGGAGCAGCAGCTGCAGAGCCCCGGCGGAGGCAACGGCAGCAAC
AGCGGCGGCAAGGGGGGAGGAGGGAGGGGGGAGAGGGCGCCGGGGGAGGC
GTTCAGGCGGGTGGATGACGTGTATTGGGGTGGGCAGATCAAGGACGAGC
GGTTGAAGGATAACTCTTgtgagtagggagggaggaaggaaggactgtgg
gttttaagtggctttcgttcgaagctcgtgacactaggaaatgatggcac
tcaccttccctccctccttcccccccttcctccttcagACGCTGGCACGT
TCGGCAGCGGTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGACGGTA
CGGGGGAAAGATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGTAACTA
CAGAGGGGGTGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGACTATG
GCTCAGATGAGTAGGGAGGGAGGGAGTGAGGGAGGACTTGAGAGAGGGAG
GACGGGAGGGGTCCGGGTGGGGTGTGTAGTGTGTACTTGTGTGATGGGTT
GAAGAAAAAAGAGAGAGGAAAAGAAGAGAGAGGGGAAAAGGTGGAGTGGA
GGAGTAGGAGGAGGAGGAGGAGGACGACGAGGAGAACGACTTTGTATCGG
TGGAGGGGGGTGGGGGGAAAGAGGGGGGAAGCAAGACATTAGGCAAAGAG
GCAGGCGAAAGGGAGGAAGGGAGGGAGGGAAGGAGAGAGGGAAACGAAAC
AAAGAACCGAACCCATATATTTGACTAAATGGCTCTACTACATTTCATCT
TCT
back to top

protein sequence of NO08G04250.1

>NO08G04250.1-protein ID=NO08G04250.1-protein|Name=NO08G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MKAQELQLLGNILAFLKAKGFDKTAAVLLKEGKGKGALSLTVGKQDLLAL
YVKAVGGSAAADLGLTSSSSSSSSSESDGESESESEGEGDKTKQAVAGPV
TPKDKKKGANTPVTTPAAASSSSSSSSSSSSSSSSSSSSSSSSSESESED
EEKKTKPNATGPAKKNSSAKTAADAEESDSSSSSSSSDSDKEDEEEETTT
TTKKKAPAAKRKATSPPATAASSSSSSSSSESDDSEEEEEEVKEKKASTP
KKPAAVQVAANKKRKAAADALSSSSSSSSSEDGDDESSSSDEEEEEEEEE
VKGKVEGNKTTKTKAAAPNKKAKVAKSKSSSSSSSSSSSSSSSSCSSSSS
SSSSSSSSSSSESDSESEDEEMVAARKAAAEEDRRRKSVAAAMAWQAAQD
EKEQQLQSPGGGNGSNSGGKGGGGRGERAPGEAFRRVDDVYWGGQIKDER
LKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISL
ASHSIKYDYGSDE*
back to top
Synonyms
Publications