NO08G04170, NO08G04170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G04170 vs. NCBI_GenBank
Match: XP_005854251.1 (ccaat-box dna binding protein subunit b, partial [Nannochloropsis gaditana CCMP526] >EKU22107.1 ccaat-box dna binding protein subunit b, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 182.6 bits (462), Expect = 6.200e-42 Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 0 Query: 35 MLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYK 135 ML+RATAS++ PTPGY+YGEIS+MTLISYE+CKEVEDFLLGRLKRNQHNVK KVL+ IKHVCR+GR DF+RDMQRQAEAIR CLQYRGPPDP RGEEIY+ Sbjct: 1 MLSRATASDNEPTPGYLYGEISRMTLISYEACKEVEDFLLGRLKRNQHNVKLKVLRTIKHVCRQGRTDFRRDMQRQAEAIRACLQYRGPPDPYRGEEIYR 100
BLAST of NO08G04170 vs. NCBI_GenBank
Match: GAX97561.1 (Hypothetical protein PINS_005451 [Pythium insidiosum]) HSP 1 Score: 151.4 bits (381), Expect = 1.500e-32 Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ ED+PTPGY+YGEI++MT SY++C +V++FL+ R+K HN+K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RGPPDPL+G+E Y+R Sbjct: 1 MDKALLNRATSKEDTPTPGYLYGEIARMTQHSYDTCSKVQEFLISRVKNKHHNIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGPPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: XP_024586704.1 (Epsin-like, N-terminal [Plasmopara halstedii] >CEG50335.1 Epsin-like, N-terminal [Plasmopara halstedii]) HSP 1 Score: 149.8 bits (377), Expect = 4.400e-32 Identity = 64/105 (60.95%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SYE+C +V+DFLL R+K H +K+K LQ+IKHVCR GR DFKR+MQR AI+ CLQ RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYETCSKVQDFLLNRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQRHIPAIKECLQVRGMPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: XP_002898085.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY63498.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 148.7 bits (374), Expect = 9.900e-32 Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K HN+K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHNIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: ETI43241.1 (hypothetical protein F443_11792 [Phytophthora parasitica P1569]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: ETL36697.1 (hypothetical protein L916_11401 [Phytophthora parasitica]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: XP_008907985.1 (hypothetical protein PPTG_12611 [Phytophthora parasitica INRA-310] >ETL89896.1 hypothetical protein L917_11275 [Phytophthora parasitica] >ETN06493.1 hypothetical protein PPTG_12611 [Phytophthora parasitica INRA-310] >KUF88723.1 AP-4 complex accessory subunit tepsin [Phytophthora nicotianae]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: ETM43171.1 (hypothetical protein L914_11328 [Phytophthora parasitica]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: ETO71894.1 (hypothetical protein F444_11876 [Phytophthora parasitica P1976] >ETP41065.1 hypothetical protein F442_11700 [Phytophthora parasitica P10297]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105
BLAST of NO08G04170 vs. NCBI_GenBank
Match: KUF97111.1 (Heat shock protein 75 kDa [Phytophthora nicotianae]) HSP 1 Score: 146.4 bits (368), Expect = 4.900e-31 Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 0 Query: 31 LDKGMLARATASEDSPTPGYMYGEISKMTLISYESCKEVEDFLLGRLKRNQHNVKFKVLQIIKHVCRRGRADFKRDMQRQAEAIRTCLQYRGPPDPLRGEEIYKR 136 +DK +L RAT+ +D+PTPGY+YGEI++MT SY++C +V+DFL+ R+K H +K+K LQ+IKHVCR GR DFKR+MQ+ I+ CLQ+RG PDPL+G+E Y+R Sbjct: 1 MDKALLTRATSKDDTPTPGYLYGEIARMTQHSYDTCTKVQDFLISRVKNKHHTIKYKALQVIKHVCREGRVDFKREMQKHIPTIKECLQFRGVPDPLKGDEYYRR 105 The following BLAST results are available for this feature:
BLAST of NO08G04170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G04170 ID=NO08G04170|Name=NO08G04170|organism=Nannochloropsis oceanica|type=gene|length=5077bpback to top protein sequence of NO08G04170.1 >NO08G04170.1-protein ID=NO08G04170.1-protein|Name=NO08G04170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1004bpback to top Synonyms
Publications
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