NO08G04100, NO08G04100 (gene) Nannochloropsis oceanica

Overview
NameNO08G04100
Unique NameNO08G04100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1007
Alignment locationchr8:1167399..1168405 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1167399..1168405 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G04100 vs. NCBI_GenBank
Match: XP_005854597.1 (hypothetical protein NGA_0195400, partial [Nannochloropsis gaditana CCMP526] >EKU21763.1 hypothetical protein NGA_0195400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.4 bits (246), Expect = 1.400e-17
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0 
Query:   53 MVLFGGRGSGARNAGVASTPAAPAP-STLSDRFNRLHVKIAPAFTGGAARDSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQ 137
            MVLFGGRG GA    V    + PAP STLSDRF+RLHVK   AFTGG  RD RR Q Q +QQQKR AAQAAFRGQTVQ+VLPKQQ
Sbjct:    1 MVLFGGRGGGAGRGAV----SGPAPSSTLSDRFDRLHVKSTAAFTGG-GRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQ 80
[Close]
BLAST of NO08G04100 vs. NCBI_GenBank
Match: EWM26878.1 (hypothetical protein Naga_100576g3 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 1.400e-17
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0 
Query:   53 MVLFGGRGSGARNAGVASTPAAPAP-STLSDRFNRLHVKIAPAFTGGAARDSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQ 137
            MVLFGGRG GA    V    + PAP STLSDRF+RLHVK   AFTGG  RD RR Q Q +QQQKR AAQAAFRGQTVQ+VLPKQQ
Sbjct:   44 MVLFGGRGGGAGRGAV----SGPAPSSTLSDRFDRLHVKSTAAFTGG-GRDVRRTQVQMTQQQKRNAAQAAFRGQTVQVVLPKQQ 123
The following BLAST results are available for this feature:
BLAST of NO08G04100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854597.11.400e-1770.59hypothetical protein NGA_0195400, partial [Nannoch... [more]
EWM26878.11.400e-1770.59hypothetical protein Naga_100576g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04100.1NO08G04100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04100.1NO08G04100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04100 ID=NO08G04100|Name=NO08G04100|organism=Nannochloropsis oceanica|type=gene|length=1007bp
TTGGCTTTCGCGCCATAACTTGTGACAGAGGCGCATGGTCCCCCTCCTTT
CTTCCCTGCCTTGTGTCCGTGGTCTACCGTAAACTTCGATGCCACCCTTA
TGCGCCGCATACCACCACTGTCACAAAGGCTATGAGATTTCTGTCTTATG
GTCAGGTGGTTGCCATTACAATAGTGTGGCGCGCGTCGTCGACCTCCTCT
CTCATCCTTCCCTCCAACCCTACTCAGCCCTTTCTTTGTTCGACACCCAC
AGTAAATCGTCCCCGCCTTCACTCCGCGCACAGCAATATGGTCCTCTTTG
GTGGCCGCGGTAGTGGGGCTCGTAACGCGGGCGTCGCTAGTACCCCTGCT
GCCCCAGCTCCCAGgtacgtgcagccccctctctccttcctccttgttcc
ttcccgccctcccttttctatcacgagctctagggagcacagcattctgg
ctgcacatggtaccaacgagtaagatgcaaacacgtgttttacgggacct
ttcgtagagttcatgacactcctttggaaataagaccaagtgaagggcgt
catcatgatcaccatctgcaccatcagcagcagcggccgctgcactgcac
taagccccctcctccctaccccgcacagcagCACTCTCTCCGATCGTTTT
AATCGCCTGCACGTCAAGATCGCACCAGCCTTCACGGGCGGTGCAGCGCG
TGACAGCCGCCGCATCCAGACGCAGACCTCCCAGCAACAGAAGCGAATTG
CGGCCCAAGCGGCTTTTCGGGGACAGACCGTGCAGATCGTCCTCCCCAAG
CAGCAGCAATCCCAGCAACACCGACAGCAGCAGCATCAGCAGCGAGGTAG
GCGTATTGTGGGACGTGGAGGGGGACGAGGAGTGGGTCTGGCTGGCCGTG
GGAGTGCTGGCCGGGGTGGACGGGGGGAGGGCGCGGCGGCGTTGGTGGGC
GGGGCACCCGTGGTGGACGAGGAGGGGGTCGTGGCCGTGGGGGGGGAGGG
GCTGTGA
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protein sequence of NO08G04100.1

>NO08G04100.1-protein ID=NO08G04100.1-protein|Name=NO08G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MRFLSYGQVVAITIVWRASSTSSLILPSNPTQPFLCSTPTVNRPRLHSAH
SNMVLFGGRGSGARNAGVASTPAAPAPSTLSDRFNRLHVKIAPAFTGGAA
RDSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQQSQQHRQQQHQQRG
RRIVGRGGGRGVGLAGRGSAGRGGRGEGAAALVGGAPVVDEEGVVAVGGE
GL*
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Synonyms
Publications