NO08G04030, NO08G04030 (gene) Nannochloropsis oceanica

Overview
NameNO08G04030
Unique NameNO08G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr8:1130919..1132037 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit H
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1130919..1132037 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR027524eIF3h
IPR000555JAMM/MPN+_dom
Homology
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_002979841.1 (eukaryotic translation initiation factor 3 subunit H [Selaginella moellendorffii] >EFJ19243.1 hypothetical protein SELMODRAFT_153526 [Selaginella moellendorffii])

HSP 1 Score: 131.0 bits (328), Expect = 7.900e-27
Identity = 106/368 (28.80%), Postives = 178/368 (48.37%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALP-RGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKI----KRFATGQGGRGGYHQREHRSWGKRRE-------EEEERNA------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            VQIDG  +L+I+KHC++ +P   TG LLGLD+        +++T  F  P RG +   + E  G N Q                     M+ L+EVNVD+N VGWY++  +G F           +    T  +       E  +  + ++YDP++++ G L +KA R        +       E++ E  V+++D+ EEIPV I N+ +VSA + +++ +      +PA             DF +L LS NPF+ +NLE L E +D ++ + +K     +  A  Q  +  + Q+       RR+       E++  NA      EP+R+++ +   QI  YCSQI+ F+    SK+YL+ ++H++
Sbjct:   28 VQIDGLVVLKIIKHCKECMPALVTGQLLGLDI-----GTTLEITNCFPFPSRGGEEDEELESDGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTYMGSFQT---------VELIETFLN-----YQENIKRCVCIIYDPLRSSQGVLALKALRLTDSFMELYRSNNFNGEKLREKNVTWQDIFEEIPVRISNSALVSALMTELETD------SPA----------TQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQFYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKLIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_017233001.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H isoform X1 [Daucus carota subsp. sativus] >KZN11698.1 hypothetical protein DCAR_004354 [Daucus carota subsp. sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-26
Identity = 107/370 (28.92%), Postives = 173/370 (46.76%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            VQI+G A+L+I+KHC++  P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++  LG +           +    T  +       E  +  + ++YDP ++  G L +KA +        +     T E++ E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPV                  D+ +L LS NPF+ RN+E L E +D ++ + +K + +      +    Q + +SW  KRR E   R A                    EP R+++ +   QI  YC+QI+  +    SKLYL+ +LH+
Sbjct:   25 VQIEGLAMLKIIKHCKEFSPSLVTGQLLGLDVGS-----VLEVTNCFPFPI-REEDEEIEAEGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLLGSYQT---------VELIETFMN-----YQENIKRCVCIIYDPSKSNQGVLALKALKLSDSFMDLYRNNNLTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAD-TPV---------------TQCDYDRLQLSTNPFMERNVEFLIECMDDLSMEQQKFQYYYRNLSRQ----QAQQQSWLQKRRSENMARKAAGEDPLPEEDPSNPIFKPIPEPPRLDSFLITNQISNYCNQINGVAGQSFSKLYLMKALHE 336          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_017233005.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H isoform X2 [Daucus carota subsp. sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-26
Identity = 107/370 (28.92%), Postives = 173/370 (46.76%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            VQI+G A+L+I+KHC++  P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++  LG +           +    T  +       E  +  + ++YDP ++  G L +KA +        +     T E++ E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPV                  D+ +L LS NPF+ RN+E L E +D ++ + +K + +      +    Q + +SW  KRR E   R A                    EP R+++ +   QI  YC+QI+  +    SKLYL+ +LH+
Sbjct:   24 VQIEGLAMLKIIKHCKEFSPSLVTGQLLGLDVGS-----VLEVTNCFPFPI-REEDEEIEAEGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLLGSYQT---------VELIETFMN-----YQENIKRCVCIIYDPSKSNQGVLALKALKLSDSFMDLYRNNNLTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAD-TPV---------------TQCDYDRLQLSTNPFMERNVEFLIECMDDLSMEQQKFQYYYRNLSRQ----QAQQQSWLQKRRSENMARKAAGEDPLPEEDPSNPIFKPIPEPPRLDSFLITNQISNYCNQINGVAGQSFSKLYLMKALHE 335          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_017244789.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Daucus carota subsp. sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.300e-26
Identity = 108/371 (29.11%), Postives = 174/371 (46.90%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            VQI+G A+L+I+KHC++  P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++  LG F           +    T  +       E  +  + ++YDP ++  G L +KA +        +     T E++ E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPVA                 D+ +L LS NPF+ RN+E L E +D ++ + +K + +      +    Q + +SW  KRR E   R A                    EP R+++ +   QI  YC+QI+  +    SKLYL+ +L ++
Sbjct:   83 VQIEGLAILKIIKHCKEFSPSLVTGQLLGLDVGS-----VLEVTNCFPFPI-REEDEEIEAEGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLLGSFQT---------VELIETFMN-----YQENIKRCVCIIYDPSKSNQGVLALKALKLSDSFMELYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAD-TPVA---------------QCDYDRLQLSTNPFMERNVEFLIECMDDLSMEQQKFQYYYRNLSRQ----QAQQQSWLQKRRAENMSRKAAGEEPLPEEDPSNPIFKPIPEPPRLDSFLITNQISNYCNQINGVAGQSFSKLYLMKALQED 395          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_008244426.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H [Prunus mume])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 106/370 (28.65%), Postives = 173/370 (46.76%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            VQI+G  +L+I+KHC++  P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++  LG F           +    T  +       E     + ++YDP+++  G L +KA +        +     T E++ E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPV               V  D+ +L LS +PFL RN+E L E +D ++ + +K + +      +    Q + ++W  KRR E   R A                    EP+R+++ +   QI  YC+QI+  +    S+LYL  +LH+
Sbjct:   25 VQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGS-----VLEVTNCFPFPI-REEDEEIEADGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLLGSFQT---------VELIETFMN-----YQENIRRCVCIIYDPLKSNQGVLALKALKLSDSFMELYRTNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAD-TPV---------------VQCDYDRLQLSTSPFLERNMEFLIECMDDLSTEQQKFQYYYRNLSRQ----QAQQQAWLQKRRAENMARKATGEEPLPEEDPSNPVFKPLPEPSRLDSFLITNQISNYCNQINGVAGQSFSRLYLTKALHE 336          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: KFH72671.1 (hypothetical protein MVEG_02960 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 101/380 (26.58%), Postives = 186/380 (48.95%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTP-----------TTREEVEGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAAT----------RQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVD---RMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEER-------------NAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            I  VQ+D   +L+IVKHC +++P   TG L+GLDV   NG  V++VT++F +P+ +++   ++  G   Q                     M+ L+EVNVD N VGWY++  +G+F      ++ S +  Q   ++   AL       ++++++D  ++AMG+L ++A R   TP           TT    +  ++F ++ EE+P+ IRN+ +++A L++++     V  + +  T            G    +  ++  LDLS +P++++NLE L E +D   +  G     +R    +  +   +    ++   RR +  +               AEP+R++ ++ + QID YC QI+ F+   + KL+ VG L K
Sbjct:   20 IQSVQLDAMVVLKIVKHCRESIPATVTGQLMGLDV---NG--VLEVTHSFPMPKNQES---EDFEGSTYQ------------------LQMMRCLREVNVDDNSVGWYQSTNMGNF------MNQSLIEHQ---YEFQQAL-----SKSVLIIHDVSRSAMGNLNLRALR--LTPAFMKLYKENKFTTEALAKAKLTFSNIFEELPITIRNSALLNALLYELETPDESVEVSTSHLTTYKSTNNNAQSTGSKTVLTPNYDMLDLSMDPYVAKNLEFLMETIDDHTQEQGNYAYWQRSVERENKKKAAYVLNRKTENARRAQAGQAALPNEDVDSMFKLPAEPSRLDHLLISGQIDNYCKQINEFAGPTLGKLFAVGELQK 357          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: OAQ29684.1 (hypothetical protein K457DRAFT_137562 [Mortierella elongata AG-77])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 100/377 (26.53%), Postives = 181/377 (48.01%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTP-----------TTREEVEGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDA-------DFTKLDLSFNPFLSRNLELLSEEVD---RMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEE-------------RNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            I  VQ+D   +L+IVKHC +++P   TG L+GLDV   NG  V++VT++F +P+      +D+   +  Q                     M+ L+EVNVD N VGWY++  +G+F      ++ S +  Q   F+   AL       ++++++D  +++MG++ ++A R   TP           TT    +  ++F ++ EE+P+ IRN  +++A L++++     V  + +  T         A        F  LDLS +P++++NLE L + +D   +  G     +R    +  +   +    ++   RR +  +               AEP+R++ ++ + QID YC QI+ F+   + KL+ VG L K
Sbjct:   19 IHSVQLDAMVVLKIVKHCRESIPATVTGQLMGLDV---NG--VLEVTHSFPMPKNNQDS-EDDASNYQVQ--------------------MMRCLREVNVDDNSVGWYQSTNMGNF------MNQSLIEHQ---FEFQQAL-----SKSVLIIHDVARSSMGNINLRALR--LTPAFMKLYKEKKFTTEALTKAKLTFSNIFEELPITIRNTALLTALLYELETADESVEVSTSHLTTYKSTASAPASKSVLAPSFDVLDLSLDPYVAKNLENLMDTIDDHHQEQGNYAYWQRSVERENKKKAAYLLNRKTENARRAQSGQAPLANEDVDAMFKTPAEPSRLDHLLISGQIDNYCKQINEFAGPTLGKLFAVGELQK 353          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_019452130.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Lupinus angustifolius] >OIW07310.1 hypothetical protein TanjilG_11944 [Lupinus angustifolius])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 110/390 (28.21%), Postives = 179/390 (45.90%), Query Frame = 0
Query:    3 PSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            P + L   +T      +  VQI+G  +L+I+KHC+D+ P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++  LG F           +    T  +       E     + ++YDP ++  G L +KA +        +     T E++ E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPVA                 D+ +L LS +  + RN+E L E +D ++ + +K + +      +    Q + ++W  KRR E   R A                    EP+R+E+ +   QI  YC+QI+  S    +KLYL+ +LH+E
Sbjct:    7 PRSFLQVAATDEVAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGS-----VLEVTNCFPFPM-REEDEEIEADGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLLGSFQT---------VELIETFMN-----YQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPD-TPVA---------------QCDYDRLQLSTSSLMERNMEFLIECMDDLSVEQQKFQFYYRSLSRQ----QAQQQAWLQKRRSENLARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISTYCNQINGVSGQSFNKLYLMKALHEE 338          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: PON95595.1 (Eukaryotic translation initiation factor 3 subunit H [Trema orientalis])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 108/390 (27.69%), Postives = 180/390 (46.15%), Query Frame = 0
Query:    3 PSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSW-GKRREEEEERNA--------------------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            P + L   +T      +  VQI+G A+L+I+KHC++  P   TG LLGLDV       V++VT  F  P  R+   + E  G N Q                     M+ L+EVNVD+N VGWY++   G +           +    T  +       E  +  + ++YDP ++  G L +KA +        H +   T E + E  +S+ D+ EEIP+ + N+ ++SAF+ +++ + TPV                  D+ +L LS +PFL RN+E L E ++ ++ + +K + +      +    Q + ++W  KRR E   R A                    EP+R+E+ +   QI  YC+Q++  +    S+LYL+ +LH+E
Sbjct:    5 PRSFLQVAATEEVASPLRVVQIEGLAILKIIKHCKEFSPALVTGQLLGLDVGS-----VLEVTNCFPFPI-REEDEEIEAEGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTLFGSYQT---------VELIETFMN-----YQENIKRCVCIIYDPSRSNQGVLALKALKLSDAFMELHRKKNFTGETLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAD-TPV---------------TQCDYDRLQLSTSPFLERNMEFLIECMEDLSMEQQKFQFYYRSLSRQ----QAQQQAWLQKRRAENAARKASGEDLLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQVNGVAGQSFSRLYLMKALHEE 336          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: GBG29921.1 (Eukaryotic translation initiation factor 3 subunit H [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 128.6 bits (322), Expect = 3.900e-26
Identity = 115/408 (28.19%), Postives = 178/408 (43.63%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDA-GYQDERPGHNR------QXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR-----------------------HLRTPTTREEVEGV----------------VSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQL----EKIKRFATGQGGRGGYHQREHRSWGKRREEEEE----RNAEPN-----------RVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            + +V++DG  LL+I+KHCE+  P    G LLG+DV  +     ++VT +F  P G      Q    G NR      +                     +K+LK++N+D N VGWYR++ L  F            +  R +F     L   + + +I L+YDP QT  G+L  KAYR                          +P     V G+                +S +++LEEIP+ I NA + +  + D+++             R G+   +D DF +L+LS N +L  NLE + EEV+ + GQ      + KR A  +  +  + Q E R+  K REE  E     N +PN            +E+++   QI  YC Q++ FS SG SKLYL  ++ +
Sbjct:   49 LEKVKVDGMVLLKIIKHCEEAWPNLCKGTLLGMDVDSK-----LEVTNSFPSPGGATGPSVQPPTGGRNRMSREEEEALKAAAAKEDAAEIDAYKGDVLKLLKDINIDCNPVGWYRSVSLSSFCNA---------QVIREMFAEQDKLDAAVVQRSIFLVYDPHQTKRGNLYFKAYRLSDAFVQLMRDRKKQSSGGNKGIVKLSPAVVAAVGGLKNDGSAVMAASAQDMDLSAEEILEEIPIEITNAHLFTVLIEDLKE-------------RNGD--RLDVDFDRLNLSTNSYLETNLEFMLEEVNELNGQQMDRNREQKRTAAIEAEQIKWIQ-ERRAENKAREERGEPLLPENGDPNNNIFKPQNSKSNLESLLILKQIGIYCEQVNKFSGSGFSKLYLSNAVQQ 426          
The following BLAST results are available for this feature:
BLAST of NO08G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002979841.17.900e-2728.80eukaryotic translation initiation factor 3 subunit... [more]
XP_017233001.11.800e-2628.92PREDICTED: eukaryotic translation initiation facto... [more]
XP_017233005.11.800e-2628.92PREDICTED: eukaryotic translation initiation facto... [more]
XP_017244789.12.300e-2629.11PREDICTED: eukaryotic translation initiation facto... [more]
XP_008244426.13.900e-2628.65PREDICTED: eukaryotic translation initiation facto... [more]
KFH72671.13.900e-2626.58hypothetical protein MVEG_02960 [Mortierella verti... [more]
OAQ29684.13.900e-2626.53hypothetical protein K457DRAFT_137562 [Mortierella... [more]
XP_019452130.13.900e-2628.21PREDICTED: eukaryotic translation initiation facto... [more]
PON95595.13.900e-2627.69Eukaryotic translation initiation factor 3 subunit... [more]
GBG29921.13.900e-2628.19Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04030.1NO08G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553211gene_3743Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g2gene3673Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04030.1NO08G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04030 ID=NO08G04030|Name=NO08G04030|organism=Nannochloropsis oceanica|type=gene|length=1119bp
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAGAGGCCTG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGAGGTGGGA
GGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTT
GTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGAC
AGTTGGAGAAAATTAAGAGATTTGCCACTGGACAGGGAGGGAGGGGCGGC
TACCATCAGAGGGAGCATCGTTCATGGGGGAAGCGGAGGGAGGAGGAGGA
AGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACAC
AGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTC
TCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGG
GAGGGAGGGGGACAAGTAG
back to top

protein sequence of NO08G04030.1

>NO08G04030.1-protein ID=NO08G04030.1-protein|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MDPSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLG
LDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQEEEENEEERSEL
AKHEYKKHMMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQR
TLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE
GVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVG
GVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGG
YHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGV
SKLYLVGSLHKEAGVEGREGDK*
back to top
Synonyms
Publications