NO08G03980, NO08G03980 (gene) Nannochloropsis oceanica

Overview
NameNO08G03980
Unique NameNO08G03980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr8:1118640..1120378 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1118640..1120378 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO08G03980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03980.1NO08G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583247gene_3738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03980.1NO08G03980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03980 ID=NO08G03980|Name=NO08G03980|organism=Nannochloropsis oceanica|type=gene|length=1739bp
TGAAACCGGAGACCTTCACCCTCTGCTTCAATTTCCGTCTCAAATCATTC
GCCTTTGCACGGCTAGCCGTGCGCTGCATTTCATACCTGCCGTCCAGTGA
TATGGTCCACGACATAACCATACGCCTAAGACAATCACCTATATGAGGCT
AGCCAGAAGCGGGGGGGTACTTTGTGCCACTCTGGTTTTTGCCTCCGCTA
CATCCAGAGCTCTCGAGCATCCCGTACATCCCTATTTCCATCAGACCATC
ACAGCCAGCGGCAGTAGGAGCTCGTCGTCGCGAAAAAAAATATCTTGGTG
TAAGGTATTACAGAGATTAATCTCTTCATGGAATTTTAAAGCTTGTGCTA
ATCAGCTACGACGTAAACATGCAGGCACCGCCCACCTCTCTCCAACACCA
TCTCATCACCTCATCTTCCCTCCCCCAACCAGGAGGCTTTGAGATAATGG
ACCGTGACAATCCCACAGCGATTGTATGCAAGCGTCTTGAAGCACTTGGT
GGACAAGGGAAAATTCTCGCCGAGGCTGTAGTCGTGATAATACACGAAGC
ACCAGATATTGCAGAGAAACTTTTCTCAGTCCCAAGGAAAGACAGAGAAT
ATATTCCCAACCTTCTGGCACAATATGACCGCGGTGGTCATACCTTGCTA
TGGTACTCTTTACATAAAGGGCAGATCGATTTTGCCGATATGTTTCTTGG
GCTCTGCGGCGAAAAAGAACTCCTGAAAAAGACAATGGCTGGGCAATCCT
TGCTTATGgtaagtacctcgatgcgcatcttgagcagaagaggaagagcg
cattgggtttgtagagagacgagcgcaaacacaaagcatacaaatatttt
tgtagtttgattcccattgcctcctttcttggttataatccgggcaagca
ttacgcgaacttaccgaaatgacgatcaggcggctggacattaatttgtt
atcgaactttccattctgcccctattccccgcatgtacatctgttgatga
gtattctcgaaaatccagaggtacaagtgtgcgtcttcacaaccgcatag
atacagagcttcacctacatgcgcaccctcaacagGCGGCCGTTGACGGA
GACCAAGCAGAGGCAGCAACCTGGCTATTGCGCCAATGGGCGGCACATTT
CGGTCTTTCTCGCATGTATCTATTGATGGAGGAAGAGAGTCTCGCGGGGT
ATTCAGCCCTGTGGTGGTGTGGGATGGACGGGCGCGAATCGGCGGCTAGA
GCGTTGTTGGCGTGCGGAGCGGACGACCACCGCCTGGATCGGAACAACGT
CTCTTGTGTGGAGATTGCCCGACATCGGCAGCAGATTGGCATGCTAGCCA
TGTATGAGGAAGCGGAGCGAGCATACTTTTTGACCAAAATGCGGCAGTTG
ACCGAAATGGGCCGGGCTGTGGGACCAGAGGTAGAGAGAAATGAGCACGG
GGAGGAAAAGAATACAGAAGATGGCAGCGGCGGTGAAATGAAATTCAAGG
GAGTCACAGCATTTGTTATGCAATATCTGACTTCAGACCTGGCAATGGAG
CTGGGGCTGTGGATGCGATAGATTGAAGCGAGAAGCTTCACAAGGGTGTA
TTTCATACGACACGATGGGTGGAATGTAAACAGGAAAGAGCGCGGAAATT
GTCTTTGTATAGGAAGTAGTAGAACATAGATCGCGCATAGAGACAAGAGA
ATAGAGGAAGGGACAATGTAAATGACTGTATTAAAACAC
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protein sequence of NO08G03980.1

>NO08G03980.1-protein ID=NO08G03980.1-protein|Name=NO08G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MQAPPTSLQHHLITSSSLPQPGGFEIMDRDNPTAIVCKRLEALGGQGKIL
AEAVVVIIHEAPDIAEKLFSVPRKDREYIPNLLAQYDRGGHTLLWYSLHK
GQIDFADMFLGLCGEKELLKKTMAGQSLLMAAVDGDQAEAATWLLRQWAA
HFGLSRMYLLMEEESLAGYSALWWCGMDGRESAARALLACGADDHRLDRN
NVSCVEIARHRQQIGMLAMYEEAERAYFLTKMRQLTEMGRAVGPEVERNE
HGEEKNTEDGSGGEMKFKGVTAFVMQYLTSDLAMELGLWMR*
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Synonyms
Publications