NO08G03960, NO08G03960 (gene) Nannochloropsis oceanica

Overview
NameNO08G03960
Unique NameNO08G03960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1331
Alignment locationchr8:1114799..1116129 +

Link to JBrowse

Properties
Property NameValue
DescriptionUPF0047 protein MTH_771
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1114799..1116129 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035917YjbQ-like_sf
IPR001602UPF0047
Homology
BLAST of NO08G03960 vs. NCBI_GenBank
Match: EWM26862.1 (Uncharacterized protein family UPF0047 [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 4.000e-95
Identity = 176/246 (71.54%), Postives = 202/246 (82.11%), Query Frame = 0
Query:   38 PSTVTTFTAVHAHSQQQAALQLMQGASSSPSASVSDPYTPPAVAQSVHRASLPDPDAADLTGTGDSVRVVTQQMKKNDGPAITNYVEISLSTKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVGYE 284
            P+T+TT    H H   QAALQL+    SS S+  SD Y PP+ A  VHRASLPDPD  D TGTG+ V    Q  KK+ GP++T+Y+EISL TK GISLHDITPQL QA+RE+ + EGWV++VSRHTTTAVTINECESRLMDDIRQ+ LKLAPP +PYLHNDIHLRPA+EED+RRV  GGEW  VEEWRAQEP+NCHAHLLSML+GN++ VPVS G+L+IGRWQSVMMVELDGERERTVGIQVVGYE
Sbjct:   44 PTTITTTLLAHGH--LQAALQLIHDTHSSISSVPSDQYHPPSPALEVHRASLPDPDVVDTTGTGEKVSFGAQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE 287          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_002500372.1 (predicted protein [Micromonas commoda] >ACO61630.1 predicted protein [Micromonas commoda])

HSP 1 Score: 205.3 bits (521), Expect = 2.500e-49
Identity = 101/164 (61.59%), Postives = 123/164 (75.00%), Query Frame = 0
Query:  118 AITNYVEISLSTKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVG 282
            ++  Y ++SL T  GISLHDITPQ+ +AIRE+ +  G VNV+SRHTTTAVTINE E RLMDDIRQY LKLAPP  PYLHNDIHLR    +       GG     + WRAQEP+N H+HLLS+L+GN+++VPV  G L IG WQS+M+VELDG R+RTVG+QV G
Sbjct:   17 SVFEYTQLSLDTSLGISLHDITPQVRRAIRESGVTNGTVNVLSRHTTTAVTINEAEGRLMDDIRQYMLKLAPPGDPYLHNDIHLRDGPPD-----WPGGN----DAWRAQEPRNAHSHLLSILIGNTLAVPVVDGELAIGTWQSLMLVELDGPRKRTVGVQVCG 171          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: PRW58497.1 (secondary thiamine-phosphate synthase enzyme isoform B [Chlorella sorokiniana] >PRW58498.1 secondary thiamine-phosphate synthase enzyme isoform A [Chlorella sorokiniana])

HSP 1 Score: 191.0 bits (484), Expect = 4.900e-45
Identity = 92/161 (57.14%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  119 ITNYVEISLSTKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQV 280
            + +Y E+ L TK GI + DITPQ+   +    +QEG+VNV+SRHTTTAVTINECE RL+DDIRQ+  +LAPP+ PYLHND+  R A           G W   E W AQEP+N H+HLLSM++GNS +VPV+ G+L +G+WQSVM+VELDG R+RTVG+QV
Sbjct: 1176 VFHYTELQLDTKPGIHIVDITPQIRAEVERLGVQEGFVNVLSRHTTTAVTINECEPRLLDDIRQFLRRLAPPNEPYLHNDLQYREAPPN------WPGGW---EAWAAQEPENAHSHLLSMVLGNSETVPVTGGKLALGQWQSVMLVELDGARKRTVGVQV 1327          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_005822519.1 (hypothetical protein GUITHDRAFT_79753, partial [Guillardia theta CCMP2712] >EKX35539.1 hypothetical protein GUITHDRAFT_79753, partial [Guillardia theta CCMP2712])

HSP 1 Score: 188.3 bits (477), Expect = 3.200e-44
Identity = 91/153 (59.48%), Postives = 120/153 (78.43%), Query Frame = 0
Query:  133 ISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRV-MGGGEWRD---VEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVG 282
            IS+ DITP++ + I+ + ++ G+VNV+SRHTTTAV INE ESRL+ D++ Y LK+APP   YLHN+IHLRP T+ED+RRV +   +  D   +E WR+QEP N H+HLLSM++GNS S+PVS G L IG+WQSVM+V+LDG R+RTVGIQV G
Sbjct:    1 ISVWDITPEIKELIKTSGMKNGFVNVISRHTTTAVMINEYESRLIKDLKDYFLKIAPPDAKYLHNEIHLRPETQEDKRRVLLNNWDINDPAVLEAWRSQEPFNAHSHLLSMMLGNSESIPVSNGELAIGQWQSVMLVDLDGPRKRTVGIQVFG 153          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: PNW78452.1 (hypothetical protein CHLRE_09g396850v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 183.7 bits (465), Expect = 7.800e-43
Identity = 105/229 (45.85%), Postives = 142/229 (62.01%), Query Frame = 0
Query:   57 LQLMQGASSSPSASVSD--PYTPPAVAQSVHRASLPDPDAADLTGTGDSVRVVTQQMKKNDGPAITNYVEISL-STKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVGY 283
            L    G   +P    +D  P+ PP  +  V R S   P A         V   T ++       I NY ++ + +T  GI+L D+TPQ+ + + ++ + EG VNV+SRHTTTAVTINE E+RLMDD+RQ+  KLAP S PYLHND+HLRPA E+        G W     W  QEP+N H+HLLSM++GN++++PVS  RL +G WQSV++VELDG R RTVG+Q+ GY
Sbjct:   25 LHAFGGERLAPRLVAADALPHEPPGTSTEV-RISASQPPA---------VSAATHRL-------IFNYHQLEVAATPPGIALVDVTPQIRELVSQSGLVEGTVNVLSRHTTTAVTINENETRLMDDVRQFLSKLAPASAPYLHNDLHLRPAPED------WPGGW---AAWAGQEPQNAHSHLLSMVLGNTLAIPVSGSRLALGTWQSVLLVELDGPRPRTVGVQLTGY 227          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_002955236.1 (hypothetical protein VOLCADRAFT_106701 [Volvox carteri f. nagariensis] >EFJ43755.1 hypothetical protein VOLCADRAFT_106701 [Volvox carteri f. nagariensis])

HSP 1 Score: 182.2 bits (461), Expect = 2.300e-42
Identity = 88/164 (53.66%), Postives = 121/164 (73.78%), Query Frame = 0
Query:  117 PAITNYVEISL-STKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQV 280
            P   NY ++ +  T  GI+L DITPQ+ + + +A + EG V+V+SRHTTTA+TINE E+RL+DD+RQ+  +LAPP+ PYLHND+HLRPA +         G W     W AQEP+N H+HLLSML+GN+++VPV+ G+L +G WQSVM+VELDG R R+VG+Q+
Sbjct:   20 PVTYNYHQLEVPQTPPGIALIDITPQIRELVAQAGLMEGCVHVLSRHTTTALTINENEARLLDDVRQFLARLAPPTDPYLHNDLHLRPAPDS------WPGGW---AAWAAQEPRNAHSHLLSMLLGNTLTVPVTGGKLALGTWQSVMLVELDGPRPRSVGVQL 174          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_005851746.1 (hypothetical protein CHLNCDRAFT_18455 [Chlorella variabilis] >EFN59644.1 hypothetical protein CHLNCDRAFT_18455 [Chlorella variabilis])

HSP 1 Score: 177.2 bits (448), Expect = 7.300e-41
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 0
Query:  123 VEISLSTKEGISLHDITPQLH--QAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVG 282
            +++ L TK GI + DITPQ    QA R   + EG+VN++SRHTTTA+ INECE+RL+DDIRQ+  KLAPP+ PYLHND+  R A            +W    E  AQEP+N H+HLLSM++GNS +VP++ GRL +G WQSVM+VELDG R RTVG+QVVG
Sbjct:    1 MQLELETKPGIHIVDITPQARGLQAAR-LGVAEGFVNILSRHTTTAIAINECEARLLDDIRQFLRKLAPPNEPYLHNDLQYREAPP----------DWPGGWEAAAQEPENAHSHLLSMVLGNSETVPITGGRLALGTWQSVMLVELDGARTRTVGVQVVG 150          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: GAX85464.1 (hypothetical protein CEUSTIGMA_g12880.t1 [Chlamydomonas eustigma])

HSP 1 Score: 174.9 bits (442), Expect = 3.600e-40
Identity = 87/159 (54.72%), Postives = 115/159 (72.33%), Query Frame = 0
Query:  122 YVEISLSTKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVV 281
            + +I   T  GIS+ DITP++   I    I+EG V+V+S+HTTTAVTINE E RLM+DI+Q+ LKLAPP  PYLHND+HLR A      +   GG       W AQEP N H+HLLS+L+GN++SVPVS G+L +G WQS+++V+LDG R+RTVG+Q+V
Sbjct:   49 FFQIGKETGPGISITDITPEIKHEIEVLNIREGTVHVLSQHTTTAVTINESEPRLMNDIKQWLLKLAPPGEPYLHNDLHLREAP-----KGWPGGH----AAWVAQEPINAHSHLLSILIGNTLSVPVSDGKLCLGTWQSILLVDLDGPRKRTVGVQLV 198          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_007513371.1 (protein of unknown function UPF0047 [Bathycoccus prasinos] >CCO16929.1 protein of unknown function UPF0047 [Bathycoccus prasinos])

HSP 1 Score: 174.5 bits (441), Expect = 4.700e-40
Identity = 88/164 (53.66%), Postives = 117/164 (71.34%), Query Frame = 0
Query:  120 TNYVEISL-STKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWR-DVEEWRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVG 282
            T+Y  ++L  T+ GI+  D+    ++ I +  I+ G V V SRHTTTAVTINE E RL+DD RQ+ LKL PP +PYLHND+H+R   ++DR        W+  VEEWRAQEP N H+HL++ML+G SV+VP+  G++ +G WQS++ VELDGERERTVGIQV G
Sbjct:   69 TSYETVNLGKTQHGIAFTDLNNICNEMIAKNGIKNGQVVVHSRHTTTAVTINEYEERLVDDARQFLLKLVPPLYPYLHNDLHVRFPPDDDR--------WKGTVEEWRAQEPLNAHSHLIAMLLGQSVTVPICDGKMTLGTWQSILFVELDGERERTVGIQVSG 224          
BLAST of NO08G03960 vs. NCBI_GenBank
Match: XP_022839135.1 (Uncharacterised protein family UPF0047 [Ostreococcus tauri] >CEF98202.1 Uncharacterised protein family UPF0047 [Ostreococcus tauri])

HSP 1 Score: 172.9 bits (437), Expect = 1.400e-39
Identity = 93/165 (56.36%), Postives = 113/165 (68.48%), Query Frame = 0
Query:  119 ITNYVEISL-STKEGISLHDITPQLHQAIREAKIQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIHLRPATEEDRRRVMGGGEWRDVEE-WRAQEPKNCHAHLLSMLVGNSVSVPVSRGRLRIGRWQSVMMVELDGERERTVGIQVVG 282
            +  Y  I L +T  GI   D++  + +AI  A ++EG V+V+SRHTTTAVTINE E RL+DD R Y  +LAP    YLHND+        DRRR  G  +W   +E WRAQEP+NCH+HLLSML+GNS  VPVS G+  +G WQSVM VELDG RERTVGIQVVG
Sbjct:   48 VYRYETIDLGTTLGGIDFKDLSEHIDRAIERAGVREGAVHVISRHTTTAVTINENEERLIDDARMYLSRLAPADDFYLHNDL--------DRRR--GPADWPGGDEAWRAQEPRNCHSHLLSMLIGNSAVVPVSEGKTTLGTWQSVMFVELDGPRERTVGIQVVG 202          
The following BLAST results are available for this feature:
BLAST of NO08G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26862.14.000e-9571.54Uncharacterized protein family UPF0047 [Nannochlor... [more]
XP_002500372.12.500e-4961.59predicted protein [Micromonas commoda] >ACO61630.1... [more]
PRW58497.14.900e-4557.14secondary thiamine-phosphate synthase enzyme isofo... [more]
XP_005822519.13.200e-4459.48hypothetical protein GUITHDRAFT_79753, partial [Gu... [more]
PNW78452.17.800e-4345.85hypothetical protein CHLRE_09g396850v5 [Chlamydomo... [more]
XP_002955236.12.300e-4253.66hypothetical protein VOLCADRAFT_106701 [Volvox car... [more]
XP_005851746.17.300e-4155.90hypothetical protein CHLNCDRAFT_18455 [Chlorella v... [more]
GAX85464.13.600e-4054.72hypothetical protein CEUSTIGMA_g12880.t1 [Chlamydo... [more]
XP_007513371.14.700e-4053.66protein of unknown function UPF0047 [Bathycoccus p... [more]
XP_022839135.11.400e-3956.36Uncharacterised protein family UPF0047 [Ostreococc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008601NSK008601Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03960.1NO08G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583239gene_3735Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g6gene3677Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03960.1NO08G03960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03960 ID=NO08G03960|Name=NO08G03960|organism=Nannochloropsis oceanica|type=gene|length=1331bp
ACAGATCATGCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTG
CCTGCACCGTCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTA
ATACGTAGCAGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCA
TGCGCACAGCCAACAGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCT
CCTCTCCTTCTGCGTCGGTATCGGgtacgtacgcggcgtgtagtgctgca
tgtacagacgaaagcatgtcgtcttcctttccttacctagcttcatcctt
ccttaccccagtctatccccatgtggctcctcctcttctgacttcccatc
ctcatgatacttatgttttcaaacatttcccacctcacacagACCCGTAT
ACGCCCCCAGCCGTCGCCCAGAGCGTTCATCGAGCTTCTCTCCCGGATCC
TGACGCCGCCGATTTGACGGGCACGGGCGACAGTGTGCGAGTGGTAACCC
AGCAAATGAAAAAAAACGATGGACCTGCTATAACCAATTACGTGGAGATT
AGCTTGTCCACAAAGGAAGgtatgcgtgctatttggggttcaatttggga
tcaggaaggactcccagcttgatcagatactgttatttctttccgttaac
gcacctccctgctgccttactttatatgcgctctcaccccttttccccct
ttccctcttcctctctccttatgtatctctctgtttgccctatctgattt
gccctcgcaccttttctcccttacccacacccttcctacccttcctcctt
cctccttccttccttcgctccgcagGCATTTCCCTCCATGACATCACTCC
CCAACTGCACCAGGCCATCCGTGAGGCAAAGATTCAGGAAGGGTGGGTCA
ACGTCGTCAGTCGCCACACCACCACAGCTGTGACCATCAATGAATGCGAG
TCTCGCCTCATGGACGATATTCGGCAGTATTGTTTGAAGCTGGCCCCACC
ATCTCACCCTTACTTACACAACGACATTCACTTGAGGCCTGCCACGGAGG
AGGACAGGAGGAGAGTGATGGGAGGAGGGGAATGGAGGGATGTGGAGGAA
TGGAGAGCGCAGGAACCCAAGAACTGCCATGCGCATTTACTGTCGATGTT
GGTTGGGAATTCTGTGAGTGTACCGGTGAGCAGGGGGAGGTTGAGGATAG
GTAGGTGGCAGTCCGTGATGATGGTGGAGCTGGACGGAGAGAGAGAGCGG
ACAGTGGGGATTCAGGTGGTGGGTTATGAGTGAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAAGGAGAGAGGATCGAAG
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protein sequence of NO08G03960.1

>NO08G03960.1-protein ID=NO08G03960.1-protein|Name=NO08G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MLPTNQWVTPLLLLACTVNLPTPDALLVPSLIRSSTTPSTVTTFTAVHAH
SQQQAALQLMQGASSSPSASVSDPYTPPAVAQSVHRASLPDPDAADLTGT
GDSVRVVTQQMKKNDGPAITNYVEISLSTKEGISLHDITPQLHQAIREAK
IQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIH
LRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLVGNSVSVPVS
RGRLRIGRWQSVMMVELDGERERTVGIQVVGYE*
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Synonyms
Publications