NO08G03900, NO08G03900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002291250.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91357.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.0 bits (201), Expect = 1.100e-12 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV-EAGQGG 98 +++ PS + L+ A T + P A FR+ P M K E+REYLTKIY L V++V T N G+R RI G R ++ KRPD+KKA+V G E+ + G GG Sbjct: 26 YKMWMPSLPLVLLTATHATPSNPATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFVVFGSELADVGLGG 123
BLAST of NO08G03900 vs. NCBI_GenBank
Match: OEU21157.1 (hypothetical protein FRACYDRAFT_267876 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.5 bits (197), Expect = 3.300e-12 Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 0 Query: 3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE-VEAGQG 97 FR+ P+ M ++ A T QP +A FRV P M K EI+EYLTKIYGL VR+V T+N G+RK + G+ ++RYK DFKKA V+ + G+G Sbjct: 12 FRMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKRKIVRGSSAVIRYKYADFKKAVVSFDRSFTDVGRG 108
BLAST of NO08G03900 vs. NCBI_GenBank
Match: EJK54740.1 (hypothetical protein THAOC_25606, partial [Thalassiosira oceanica]) HSP 1 Score: 74.7 bits (182), Expect = 1.800e-10 Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 23 PYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGA 100 P QA FR+ P M K E++EYLTKIYGL V KV T N G+R R+ G + KRPDFKKA+VT + A G GA Sbjct: 8 PAQATFRILPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDFKKAFVTF-DNTLADTGMGA 83
BLAST of NO08G03900 vs. NCBI_GenBank
Match: EJK70727.1 (hypothetical protein THAOC_07894 [Thalassiosira oceanica]) HSP 1 Score: 72.4 bits (176), Expect = 9.000e-10 Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 23 PYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGA 100 P QA FRV P M K E++EYLTKIYGL V KV T N G+R R+ G + KRPD+KKA+V+ + A G GA Sbjct: 49 PAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDYKKAFVSF-DNTLADTGMGA 124
BLAST of NO08G03900 vs. NCBI_GenBank
Match: GAX10852.1 (hypothetical protein FisN_31Hu059 [Fistulifera solaris]) HSP 1 Score: 71.6 bits (174), Expect = 1.500e-9 Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0 Query: 3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVE 93 FR+ P+ + L+ A T P +AVFR P M K EI+EYLTKIY L V++V T N G+RKR+ + + +K DFKKA VT + ++ Sbjct: 10 FRMWMPTMPLTLVSAKNATPTHPARAVFRTLPRMTKHEIKEYLTKIYQLPVKQVNTMNYQGKRKRLLTQNKPVYFKYKDFKKAVVTFDDSLQ 101
BLAST of NO08G03900 vs. NCBI_GenBank
Match: GAX96992.1 (ribosomal protein L23, putative [Pythium insidiosum]) HSP 1 Score: 69.7 bits (169), Expect = 5.900e-9 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90 R+ FP+ M + A T+ + Q VFRV P K +I+EYLTK+YGL V KV T N G+ KR F R + YK D+KKA VTL E Sbjct: 5 RIRFPNMSMVFMGKNARTRLRDNQYVFRVEPNYTKHDIKEYLTKVYGLPVTKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002177223.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51686.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 69.3 bits (168), Expect = 7.600e-9 Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0 Query: 3 FRVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVE 93 FR+ PS + ++ R+ T P A+FR P M K EI+EYLTKIY L V+KV T N G+RKR+ + +K +FKKA VT + ++ Sbjct: 15 FRMWMPSMPLTMVSARSATANGPAFAIFRTVPRMTKHEIKEYLTKIYDLPVKKVNTMNYEGKRKRLISNSGIAYFKYKNFKKAVVTFDDSLQ 106
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_024582746.1 (ribosomal protein [Plasmopara halstedii] >CEG46377.1 ribosomal protein [Plasmopara halstedii]) HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90 RV FP+ + + A T+ + Q VFRV P K EI+EYLTK+YGL V KV T N G+ KR F R + YK D+KKA VT+ E Sbjct: 5 RVRFPNMAVTFMGKNARTRLRDNQYVFRVEPNYTKHEIKEYLTKVYGLPVTKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTIKE 90
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_009531124.1 (hypothetical protein PHYSODRAFT_355008 [Phytophthora sojae] >EGZ13695.1 hypothetical protein PHYSODRAFT_355008 [Phytophthora sojae] >OWZ07470.1 Ribosomal protein L23 [Phytophthora megakarya] >POM74063.1 Ribosomal protein L23 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 67.0 bits (162), Expect = 3.800e-8 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90 RV FP+ + + A T+ + Q VFRV P K EI+EYLTK+Y L V KV T N G+ KR F R + YK D+KKA VTL E Sbjct: 5 RVKFPNMAVTFMGKNARTRLRDNQFVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_008893333.1 (hypothetical protein PPTG_01701 [Phytophthora parasitica INRA-310] >ETI45076.1 hypothetical protein F443_10256 [Phytophthora parasitica P1569] >ETK85051.1 hypothetical protein L915_10031 [Phytophthora parasitica] >ETL38473.1 hypothetical protein L916_09938 [Phytophthora parasitica] >ETL91593.1 hypothetical protein L917_09861 [Phytophthora parasitica] >ETM44887.1 hypothetical protein L914_09912 [Phytophthora parasitica] >ETN21552.1 hypothetical protein PPTG_01701 [Phytophthora parasitica INRA-310] >ETO73739.1 hypothetical protein F444_10355 [Phytophthora parasitica P1976] >ETP14893.1 hypothetical protein F441_10193 [Phytophthora parasitica CJ01A1] >ETP42961.1 hypothetical protein F442_10160 [Phytophthora parasitica P10297] >KUF80782.1 50S ribosomal protein L23 [Phytophthora nicotianae] >KUF89234.1 hypothetical protein AM588_10003035 [Phytophthora nicotianae] >KUF90823.1 50S ribosomal protein L23 [Phytophthora nicotianae]) HSP 1 Score: 67.0 bits (162), Expect = 3.800e-8 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90 RV FP+ + + A T+ + Q VFRV P K EI+EYLTK+Y L V KV T N G+ KR F R + YK D+KKA VTL E Sbjct: 5 RVKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90 The following BLAST results are available for this feature:
BLAST of NO08G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 18
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03900 ID=NO08G03900|Name=NO08G03900|organism=Nannochloropsis oceanica|type=gene|length=1295bpback to top protein sequence of NO08G03900.1 >NO08G03900.1-protein ID=NO08G03900.1-protein|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bpback to top Synonyms
Publications
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