NO08G03860, NO08G03860 (gene) Nannochloropsis oceanica

Overview
NameNO08G03860
Unique NameNO08G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2740
Alignment locationchr8:1089121..1091860 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1089121..1091860 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03860 vs. NCBI_GenBank
Match: EWM26868.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 618.2 bits (1593), Expect = 3.100e-173
Identity = 404/717 (56.35%), Postives = 475/717 (66.25%), Query Frame = 0 
Query:    1 MQRLVALRQAVGAGTL-GVVRNNMPSSLSSLASGNISSEDVVA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALLRQAGKELGRAWKQEGGVKPGIARFERILLGEDLEAMERCWRE-MRKEGLDFWHMQKFLGLLLEDRHLDVRGDGGSSLSKHHQRXXQQGRTTKASSGELPKQRLRLAWSIFDHMTAVEKAAANK---GPRKDGAAKAAQNSXXXXXXXXXXXASAPAASGALRTIASHHWGRVYSCLLKACAAVGDGSRAKELSDHMESAGILPGEEALSNLVMALAKTRIRHEAQEHFERARRRGLTLSSAAKSCLISCHARALDGAAAAHVLSAAIQEATLNDNPGQVSGNMVKKVLEVGIETGDVDVLRQGLTALSVPVDRGMALQILNVAARKGDGKLAMDMFYASEGWGYAPTASAFNAVVQALGLSKNDVAMLKALNEMCAWGFSPSSGTLHLLARQLSQSVTRLDEAYNNLVAMRRANEEYVRAQEQQMQAEAKAGXXXXXXXXRGEGATAPFA-NAPLPVSASAVYLIVLGCAYGNQLDRAFATFEDYGPVFGLVHDTAVCNALLLACLRSRSLQVGAATSVMTEMDRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILWHALLGEHDRAQELLSGLQAQGGYMPSYIEERLRQIRENGDRL 711
            MQR +ALR+    G L  V+  +    LSS+ SGNIS +D  A                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX E L +QA  ELG+AWKQ  GVKPG+ARFER+L GEDL+AMERCWR+ + KE L+FWH+  FLGLLL+DR L+ R   G+  ++      + G+ T    GE  ++RLRLA S+F  M   + A   K    P + GA  A               A A  +S    T    HW RVY+ +L+ACA + DG  A E+ DHM+  G   GEE +S +VMALAK R+R EAQ  FE A  +GL LS AAKSCLISCHARALDG AAA VL   +++    +NPG VSGNMV KVLEVGIETG+V VLRQGL AL++PVDRGM LQILN+AA++GDG+LAMD+FYA EGWG++PTAS FNAV+QALG+SKNDVAMLKALNEMCA GF+PS GTLHL+ARQLS+SV RLDEAYNNLVA+++A +++VR QE + + E +A          GEGA   F  NAPLPVS SAVYLIVLGCAY NQLDRAFATFEDY PVFGL +DT   NALLLACLRSRSLQVGAA SVM EMDRLG                                                ILW+ALLGEHDRAQELLSG+ AQG Y+PSY EERL+QIR NGDRL
Sbjct:    1 MQRFIALRKLAAGGFLTPVLSPHHGRYLSSIFSGNISPDDSAAPTLGQNTSRGTPMQEELRASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEKLFQQAALELGQAWKQAAGVKPGMARFERLLQGEDLDAMERCWRQTVGKERLNFWHVHTFLGLLLDDRFLNARPQSGAVPAE-----FEGGQKTGGKRGETLRRRLRLASSLFKDMVMQKIARERKAGGSPLEGGALNA---------------AGATVSSDPDPT--PQHWQRVYNLMLRACANIADGVCALEVWDHMQETGFSAGEETMSFVVMALAKARMRLEAQARFEEAVEKGLVLSPAAKSCLISCHARALDGEAAARVLEVTVEDGRSPENPGVVSGNMVTKVLEVGIETGNVKVLRQGLNALTMPVDRGMGLQILNMAAKRGDGQLAMDVFYALEGWGFSPTASVFNAVIQALGISKNDVAMLKALNEMCALGFTPSEGTLHLVARQLSKSVARLDEAYNNLVALQKAYQDHVR-QEAEGRQEQQA-----VDGKDGEGADPAFVPNAPLPVSGSAVYLIVLGCAYANQLDRAFATFEDYQPVFGLAYDTNASNALLLACLRSRSLQVGAAISVMNEMDRLGIAPNDETCHLMVRILAQAKEVDVKRMESVLSHMDEKGVVLRPATQRLLILWYALLGEHDRAQELLSGMHAQGCYVPSYFEERLKQIRLNGDRL 689
The following BLAST results are available for this feature:
BLAST of NO08G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26868.13.100e-17356.35Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008615NSK008615Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03860.1NO08G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583191gene_3723Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g15gene3686Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03860.1NO08G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03860 ID=NO08G03860|Name=NO08G03860|organism=Nannochloropsis oceanica|type=gene|length=2740bp
CGGCCATGGTTCCTGCAGTCGTCTAGACGGAGAGATGTGTAACATGTGTA
GCTCAAAGTTAGATGGAGATTAGTTCCAATAGTTCTTTGCTTTCGCGGCA
TAAACTTCGACACCGGGAATTACATCAAGCGTGTGCCGATGCCGATGTGA
GGCTTAGTACATCTTCACCTCATGCATCTGCTCCGCCCTTCGCATTCCTA
TCCATAACACGTTCTGATGGGTGCTTGGAAGGAGTAGGGGTGGTGATGGG
CTTTCCCAGGCTTCTGGGCCGCCTGTAGTATCTCAATCGGAAGGGATCCA
CCACAATGGCCCGCCTGCCCCACCACTTACCCCTCTGCAACACTGCAAAT
TCTAACCTGCTCCCATACATACAAAATACAGCACAAGCCAGAGATGCAGC
GTTTGGTAGCCTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGGCGTCGTT
CGCAACAACATGCCAAGgtatgatgaatatgcggcgtccgtcatcgttgc
cctccgttctccatgttgttcctctcaccgcgcactaccccacatcccac
aatctcactatccactacagCTCCCTGTCCTCCTTGGCAAGCGGTAACAT
TTCGTCTGAAGATGTGGTCGCTTCGAGCAGCAGCAACAGCAACACACCCA
CTTGCAAGGGCGTGCCTTCGACTCCTTCCCCCCCTACCACTGCCACCCCT
CCTTCCACCCTCCACGACATTATGAAGCAATCTTCTTCCATCTCCTCTAG
CAGCAGCGCCGAAGACCAAGAAGCCCTTCTTCGACAAGCAGGAAAGGAAC
TTGGACGGGCCTGGAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGCAAGG
TTCGAGCGGATTTTGCTAGGGGAAGATTTGGAGGCGATGGAGCGGTGCTG
GAGGGAGATGCGGAAGGAAGGATTGGATTTTTGGCACATGCAGAAATTTT
TGGGGCTGCTATTGGAAGACCGGCATTTGGACGTGCGTGGTGATGGGGGT
TCGTCGTTGTCGAAGCATCATCAACGCCACCACCAGCAGGGAAGGACTAC
GAAGGCCAGCAGTGGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCCTGGT
CCATTTTCGACCACATGACAGCAGTTGAAAAGGCGGCTGCAAATAAAGGA
CCGCGGAAGGACGGTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGGCAGC
TCTGAACAGCGACGATGCAACAGCATCAGCACCAGCAGCATCGGGGGCCT
TGCGTACGATCGCATCCCACCACTGGGGCCGGGTCTACAGTTGCCTCCTC
AAGGCTTGTGCCGCCGTCGGGGATGGATCACGGGCCAAGGAGTTGTCAGA
CCACATGGAGTCAGCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGCAACC
TAGTCATGGCTCTGGCCAAGACCCGGATCCGCCACGAAGCACAAGAGCAT
TTTGAGCGCGCTCGCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCAAGAG
CTGCCTTATTTCTTGTCATGCCCGTGCATTGGACGGCGCGGCGGCTGCGC
ATGTCCTGAGTGCCGCGATCCAGGAAGCGACCTTGAATGATAACCCAGGG
CAGGTATCGGGGAACATGGTGAAGAAGGTGTTGGAAGTAGGAATTGAAAC
AGGCGATGTCGATGTTTTGCGGCAGGGATTAACGGCACTGTCTGTGCCGG
TGGATCGTGGGATGGCACTTCAGATCTTAAATGTTGCGGCAAGGAAGGGC
GATGGGAAGTTGGCGATGGACATGTTCTATGCGTCTGAAGGGTGGGGCTA
CGCACCTACAGCGTCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGCCTCT
CGAAGAATGACGTGGCAATGCTCAAGGCATTAAATGAAATGTGTGCTTGG
GGGTTTTCGCCGTCGTCGGGAACCCTGCATTTGTTGGCGCGACAGCTGTC
TCAATCTGTCACCAGGCTGGACGAGGCCTACAACAATTTGGTGGCCATGC
GGAGAGCGAACGAGGAGTATGTGCGAGCGCAGGAGCAACAGATGCAAGCG
GAAGCAAAGGCGGGTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCGAGGG
GGCGACGGCTCCGTTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCTGCCG
TCTACCTTATTGTGTTGGGGTGTGCGTACGGTAATCAGCTCGATCGTGCG
TTTGCGACCTTTGAAGATTACGGCCCTGTTTTTGGACTGGTGCATGACAC
GGCCGTGTGCAACGCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCGCTGC
AGGTAGGGGCGGCCACATCGGTCATGACGGAGATGGATCGCCTCGGCGTC
GCGCCGGACGACGAAACTTGCCACTTGATGGTTCGCATCCTTGTACAGGC
CAAGGAAGCGGACGCTAAGAGAGTGGAGCAAGTTCTGTCATTCATGGACC
AAAAGGGTGTGGTGCCCCGGGCGAGCACCCAGCGGCTTCTTATTTTGTGG
CACGCACTGTTAGGGGAACATGACCGGGCGCAAGAGCTACTGAGTGGATT
GCAAGCACAGGGTGGGTATATGCCATCGTATATTGAAGAGAGATTGCGGC
AGATTCGGGAGAATGGGGATCGGTTGTGAGGTGAGAGGGATGACATGTAT
GCTTGCCTAAGGAATGCGGGTAGGGATTGGAAAGAACACGATAGTATTAA
AATAGAAAAAGAAAAATGTTTTTCAGACATTGAAGTGAGG
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protein sequence of NO08G03860.1

>NO08G03860.1-protein ID=NO08G03860.1-protein|Name=NO08G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MQRLVALRQAVGAGTLGVVRNNMPSSLSSLASGNISSEDVVASSSSNSNT
PTCKGVPSTPSPPTTATPPSTLHDIMKQSSSISSSSSAEDQEALLRQAGK
ELGRAWKQEGGVKPGIARFERILLGEDLEAMERCWREMRKEGLDFWHMQK
FLGLLLEDRHLDVRGDGGSSLSKHHQRHHQQGRTTKASSGELPKQRLRLA
WSIFDHMTAVEKAAANKGPRKDGAAKAAQNSAKAALNSDDATASAPAASG
ALRTIASHHWGRVYSCLLKACAAVGDGSRAKELSDHMESAGILPGEEALS
NLVMALAKTRIRHEAQEHFERARRRGLTLSSAAKSCLISCHARALDGAAA
AHVLSAAIQEATLNDNPGQVSGNMVKKVLEVGIETGDVDVLRQGLTALSV
PVDRGMALQILNVAARKGDGKLAMDMFYASEGWGYAPTASAFNAVVQALG
LSKNDVAMLKALNEMCAWGFSPSSGTLHLLARQLSQSVTRLDEAYNNLVA
MRRANEEYVRAQEQQMQAEAKAGGEANSGGKRGEGATAPFANAPLPVSAS
AVYLIVLGCAYGNQLDRAFATFEDYGPVFGLVHDTAVCNALLLACLRSRS
LQVGAATSVMTEMDRLGVAPDDETCHLMVRILVQAKEADAKRVEQVLSFM
DQKGVVPRASTQRLLILWHALLGEHDRAQELLSGLQAQGGYMPSYIEERL
RQIRENGDRL*
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Synonyms
Publications