NO08G03810, NO08G03810 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03810 vs. NCBI_GenBank
Match: EWM26841.1 (hypothetical protein Naga_100263g6, partial [Nannochloropsis gaditana]) HSP 1 Score: 386.3 bits (991), Expect = 3.200e-103 Identity = 311/739 (42.08%), Postives = 388/739 (52.50%), Query Frame = 0
Query: 33 KSNVRGNLHESFPCIIGTDAQRIQQQVDEAVKRLIDEQCPSST--SSTTWAPHPKYRGVSQSSTGLFRVTSTLPNANFTLSEALSTFAYFHIHTHGPQILQSLLLAHLEQAKVLALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGSISGNPYNGGDVGVGPDSSVVKMVWSEKKQSAKEFILAQRTGRYYY-SPGTSTTSTSTSGAP--VGDFVYYLATSIKKPHHFPLLGLNPSXXXXXXXXXXXXXXXXXXXXXXDDLGLSELPLLAFVVGPSLTQGAVDLTVLLSPTTFSSQTENKNLSPCLHFARSALSRYLLETLAAHRSLHFTLPDLTLALISPFALQHRILLRMPDTTS---------LPTSSTPSLPPVPTYRLVTIRFLPSSSGTFSIKGLGDKDQALFPSFYLDRILHSSFLPGEEREVRFITSSETKELTLWWTGLKKGKLH-----------SRDPECPFLYHHLLFLPFLLL--------LLGTQTLDL----------------------------------------------------------------FLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFLDPLLPLLMSSGMYLSLYHALLHYPEAVVALEDLSLWALAVGLGLTHXXXXXXXXXXSTSKLKVYLALVNLECVVLDEQWCGRFVLGAHMLAAVVVTVVEALASRLLTME 675
K+NVR N+HESFPC++G +AQRIQ +VDE VKRLI EQ PSS + T W+PHP Y + SS+GLFR+TST+ A F L++ + F +FHIHTH PQILQSLL A LE+ K+LALL GS + G G G DSS+VKM W+EKK A+EF++AQRTGRY Y SPG S S+ G+P GDFVYYLATS K PH P L P+ + PL A +VGPS Q A+ L+V+L+P ++ +L P L A+ YL++T +AHRSL+ LPD T+ALISP A QHRILLRMPDT S YRLVTI +LPSS+GTF + G KDQ+LFPS Y+ + LH +FLPG R++R + S+ETKEL+L W GL+KGKLH S H L +LP +L+ ++ T+T L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LDPL PL M+ G Y LYHAL YPEA +ALE+LS ALAVGLG+ H +TSKL+VYL LV+LECVVL + R + H LA+ +T++ AL +++L E
Sbjct: 28 KANVRSNMHESFPCVVGAEAQRIQAEVDEVVKRLIHEQAPSSAAPTPTLWSPHPTYPDIQVSSSGLFRITSTITAATFNLNDVSAAFIFFHIHTHSPQILQSLLFAQLERVKILALL-----------------------PASCSGSLTSSNDGCVTGSRESHESEGN--GSGTDSSIVKMTWAEKKHPAREFVVAQRTGRYRYPSPG---ASNSSEGSPHLDGDFVYYLATSFKNPHLIP--SLLPALSQEAGPPSPVVAPPSPLTKAH-----AAFPLFALLVGPSTAQNALTLSVVLAPGIL---CQDSSLLPFLRSCLVAMGDYLIDTFSAHRSLNLALPDPTVALISPSATQHRILLRMPDTPSTSXXXXXXXXXXXXXXXXXXXXXYRLVTISYLPSSAGTFLLHGWASKDQSLFPSSYVQKTLHHAFLPGIWRKIRVVISAETKELSLVWRGLRKGKLHRYRVHVRTIPASALSRTLTYLHCLAYLPRVLMGKEETKDKVMTTRTFSLTRPAALVTVIRYPQHMREALFPLATLLPASFSSATSIAAFPVKPASFFPSLSSLPRALRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYLIPAPNPLLALLDPLFPLAMALGPYAFLYHALHCYPEAALALEELSFPALAVGLGVVHLALSLALQALTTSKLQVYLNLVSLECVVLSQDLWARALFTLHFLASAGLTMIGALLAQVLAWE 728
BLAST of NO08G03810 vs. NCBI_GenBank
Match: EWM26847.1 (hypothetical protein Naga_100097g20, partial [Nannochloropsis gaditana]) HSP 1 Score: 181.8 bits (460), Expect = 1.200e-41 Identity = 155/473 (32.77%), Postives = 212/473 (44.82%), Query Frame = 0
Query: 675 GGREGGRFASGEKGRGMWGWGGGNGGRREMMCGN---SNHEWMVKYLDMLQLEGTSEDKLFLMGGMAAVAVVMAVVVAVPHFVCRSNRGLNIQIVSLLDKARVVAPRQAPPANAPCLLSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMTYATPRSAPV-------EGSWKWNNTKNGSSGTSLRRGREG----GGGEREVMSSSPFSLGGKGGLGSLLGGSNSAVAGAVNKEDGLTLQTPASKGSGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGRVIEPDYEREMGRPTVDKSMQKSGMVKEERYTGVGLSRRKMWKEVYLVVDAEAVTVLKRKDGASVIHHRFPISEVGTRRVVHPPSALGGREDGYAGFVLYYDNVSLELRCGGGEGEVDKWLSVLQWNAVVAARKA 1134
GGREG G WGG + R + C + S H W+ YL+ Q++ SE KL L+G M AVAV+ A V + H++ NRGLN Q+V++LD+ARVVAPR A +A L +ATP+SAPV + W+ G+ G +G GER+ + P GG+ G LG +S + + DG PAS S + YGRV+EPDYER+MG+ T+++ + KSGMV+E+R +G G +RRK WK+VYLVVDA AVTV +++ +SV+ HR P++EVGTR++V G ++D AG +L S+EL+C GEGEVDKWLSVLQWNA VA R+A
Sbjct: 1 GGREGA------VGSARKSWGGYH---RSVQCSSEERSPHAWLTMYLNSFQVDRASEAKLLLIGWMTAVAVMGAGGVGMWHWITGCNRGLNKQLVTILDRARVVAPRLALSTSARSL---------GGRHVGTGGGEGRDRGEEREGNRRGALSLVGERSSSLGQSGRPSMSGQPLMDAGPRHATPKSAPVVLKSVANQPLWEGQVGPRGNKAGKAVGGGQGAWLVAHGERDGTRTGP---GGERRAG--LGLDSSPSSASSLPPDGTAAIPPASPLSSLGTEVTSKEGAREEDAMTQNTPRGAGNAEIIAGHTTAADPARRLSTSAGVKFQPPAFYGRVVEPDYERDMGQKTLERGLVKSGMVQEKRPSGTGWARRKCWKDVYLVVDAGAVTVYRQRADSSVVLHRLPVAEVGTRKIVG-----GDKQD--AGMILTCGGESVELQCPAGEGEVDKWLSVLQWNAEVALRRA 443 The following BLAST results are available for this feature:
BLAST of NO08G03810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03810 ID=NO08G03810|Name=NO08G03810|organism=Nannochloropsis oceanica|type=gene|length=3710bpback to top protein sequence of NO08G03810.1 >NO08G03810.1-protein ID=NO08G03810.1-protein|Name=NO08G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1152bpback to top Synonyms
Publications
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