NO08G03780, NO08G03780 (gene) Nannochloropsis oceanica

Overview
NameNO08G03780
Unique NameNO08G03780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1321
Alignment locationchr8:1068625..1069945 -

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Properties
Property NameValue
Descriptionmitochondrial ribosomal protein L51/S25/CI-B8 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1068625..1069945 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR007741Ribosome/NADH_DH
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO08G03780 vs. NCBI_GenBank
Match: EWM26845.1 (multidrug pheromone mdr abc transporter family [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 2.100e-46
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQ 112
            MS+RGVPQLRSLLLRYSDRDGSSRA+R+YIGSRLVAFAQAH HVK+TT+LKRN HPVVQADY FG+PKVVCVR A TAE+VE VILALRNTTGRKVKPL KPVVSRLPS+Q
Sbjct:    1 MSVRGVPQLRSLLLRYSDRDGSSRAMREYIGSRLVAFAQAHGHVKITTQLKRNVHPVVQADYVFGDPKVVCVRRATTAEEVEKVILALRNTTGRKVKPLNKPVVSRLPSVQ 111          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: CBJ25772.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.4 bits (272), Expect = 8.800e-21
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDPRMPLHKEKVTLEH 130
            M+ RGV QLR L L+Y D  GSS+  R++I  R+V FA      +V TEL+   HP +  DY  GE K + ++     E ++  ++ LRN++G KV+  +KPV SR PSIQG+WD   PLH   + +EH
Sbjct:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHRIVEFANNTPAAEVVTELRPGKHPYIMGDYVTGEVKTIGIKNIAPGEIMDYAMM-LRNSSGHKVRKFKKPVESRYPSIQGVWDIDAPLHTTDIHVEH 128          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: XP_009036903.1 (hypothetical protein AURANDRAFT_26234 [Aureococcus anophagefferens] >EGB08168.1 hypothetical protein AURANDRAFT_26234 [Aureococcus anophagefferens])

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-16
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQG 113
            MS RGV QL+SL++RY    GSSR  R+++  +  AFA+A+  V    EL R  HPVV+  Y +GE KV   R    AE +  V   LRNT+GRK+K   KPV+S  PSIQG
Sbjct:    1 MSHRGVLQLKSLVVRYCPHGGSSRGAREFVRDKFAAFAEANASVDCRAELGRGKHPVVKGAYVWGEDKVADGRNLSAAE-ILKVAEGLRNTSGRKMKRFDKPVLSMTPSIQG 111          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: KFH63538.1 (hypothetical protein MVEG_10947 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 93.6 bits (231), Expect = 5.000e-16
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 0
Query:    6 VPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDP 117
            VPQ R L+  Y +R GSSR + +Y+   L+ FA+ H HV+V    + + HPV++  Y  G+ KVVCVR  E   D+   +  L+ ++G K+K  +KPV+S   S++G+W P
Sbjct:   18 VPQCRRLVFHYCERSGSSRGMIEYLKKDLIQFAKEHPHVEVIVTPRPSKHPVIRGLYLNGKDKVVCVRNMEPT-DIAGKVALLKESSGNKMKTFKKPVISTTESVRGIWSP 127          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: XP_002180261.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48452.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 92.8 bits (229), Expect = 8.600e-16
Identity = 49/122 (40.16%), Postives = 76/122 (62.30%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGS-RLVAFAQAHEHVKVTTELKRNAHPVVQADY-AFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDPRMPL 121
            M+ RGV QL  L L Y +  GSSRA+R Y+G+ +LV++A AH HV++  +++   HP V A+Y +      + VR  +  +DV+ V+  L N +GRK+  +  PV++  PSIQG+W P + L
Sbjct:    1 MATRGVFQLTKLRLHYCEVGGSSRAMRTYLGNGKLVSWATAHPHVEIEVQVRNGHHPFVLAEYRSMAATHQISVRNVDRWQDVQDVLYLLSNRSGRKITKITTPVLTDTPSIQGVWTPFLTL 122          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: XP_021877766.1 (thioredoxin-like protein [Lobosporangium transversale] >ORZ06970.1 thioredoxin-like protein [Lobosporangium transversale])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 0
Query:    6 VPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDP 117
            +PQ R L+  Y +R GSSR + +Y+   L+ FA+ H HV+V    + + HPV++  Y  G+ KVVCVR  E  +D+   +  L+ + G ++K  +KPV+S   S++G+W P
Sbjct:   18 IPQCRRLVFHYCERSGSSRGMIEYVKKDLIEFAKEHPHVEVIVTPRPSKHPVIRGLYLNGKDKVVCVRNME-PKDIAGKVQLLKESAGNRMKVFKKPVISTTESVRGIWSP 127          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: OAQ22455.1 (hypothetical protein K457DRAFT_143433 [Mortierella elongata AG-77])

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-15
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 0
Query:    6 VPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDP 117
            +PQ R L+  Y +R GSSR + +Y+   L+ FA+ H HV+V    + + HPV++  Y  G+ KVVCVR  E   D+   +  L+ + G ++K  +KPV+S   S++G+W P
Sbjct:   17 IPQCRRLVFHYCERSGSSRGMIEYLKKDLIQFAKEHPHVEVIVTPRPSKHPVIRGLYLNGKDKVVCVRNMEPT-DIAGKVALLKESAGNRMKVFKKPVISTTESVRGIWSP 126          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: XP_004510556.1 (PREDICTED: 54S ribosomal protein L51, mitochondrial-like [Cicer arietinum])

HSP 1 Score: 90.1 bits (222), Expect = 5.600e-15
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMW 115
            M++RGV QL+ L++ YSD  GSSR IR ++ S L AF +++  ++V TE+ R  HP ++A Y     +VVCVR  + AE+V      LRN  GRKV  LR   V++ PS+QG W
Sbjct:    1 MALRGVWQLQKLIVSYSDWGGSSRGIRAFMESHLPAFKESNPQLEVVTEMIRGQHPHLKAFYKNHNERVVCVRNMD-AEEVLLHATRLRNALGRKVIKLRTRHVTKHPSVQGTW 113          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: GAX17464.1 (hypothetical protein FisN_5Hu114 [Fistulifera solaris])

HSP 1 Score: 90.1 bits (222), Expect = 5.600e-15
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGS-RLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPK-VVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDPRMPLHKE 124
            M+ RGV QL  L L Y +  GSS  +R+YIG+  LVA+A+ H++V +   ++   HP V+A+Y     +  +C++     + VE V   LRN +GRK+  + +P+ +  PSIQG+W P + L  E
Sbjct:    1 MATRGVFQLTKLRLNYCEFSGSSATVREYIGNGPLVAWARKHDNVAIEVVVRNGKHPYVEAEYQHNTTRHQICLKNKPDTKAVEKVFDTLRNRSGRKISKITQPIKTSTPSIQGVWTPFLNLQNE 125          
BLAST of NO08G03780 vs. NCBI_GenBank
Match: XP_008616528.1 (hypothetical protein SDRG_12243 [Saprolegnia diclina VS20] >XP_012198849.1 hypothetical protein SPRG_04539 [Saprolegnia parasitica CBS 223.65] >EQC29961.1 hypothetical protein SDRG_12243 [Saprolegnia diclina VS20] >KDO30638.1 hypothetical protein SPRG_04539 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 89.4 bits (220), Expect = 9.500e-15
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 0
Query:    1 MSIRGVPQLRSLLLRYSDRDGSSRAIRDYI-GSRLVAFAQAHEHVKVTTELKRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLRKPVVSRLPSIQGMWDPRMPLHKEKVTLE 129
            M+ RGV QL  L +RY    GSSR +RD +   R +AF   +  V   TELK N HPV+  DY   E KV  V+  E    V  +I  LR+T+GRK+  +  PV+S+ P+IQG+W P      EK T E
Sbjct:    1 MATRGVWQLEKLTIRYCQYGGSSRYVRDLLKDQRFLAFVAENPQVTFETELKGNRHPVLIGDYITKEQKVCDVKNQE-IPFVMQMIQRLRDTSGRKMTKVNAPVLSKRPTIQGIWQPDTAELFEKTTFE 128          
The following BLAST results are available for this feature:
BLAST of NO08G03780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26845.12.100e-4686.49multidrug pheromone mdr abc transporter family [Na... [more]
CBJ25772.18.800e-2142.64conserved unknown protein [Ectocarpus siliculosus][more]
XP_009036903.11.700e-1648.21hypothetical protein AURANDRAFT_26234 [Aureococcus... [more]
KFH63538.15.000e-1639.64hypothetical protein MVEG_10947 [Mortierella verti... [more]
XP_002180261.18.600e-1640.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_021877766.11.900e-1537.84thioredoxin-like protein [Lobosporangium transvers... [more]
OAQ22455.12.500e-1537.84hypothetical protein K457DRAFT_143433 [Mortierella... [more]
XP_004510556.15.600e-1544.74PREDICTED: 54S ribosomal protein L51, mitochondria... [more]
GAX17464.15.600e-1537.60hypothetical protein FisN_5Hu114 [Fistulifera sola... [more]
XP_008616528.19.500e-1542.64hypothetical protein SDRG_12243 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008626NSK008626Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03780.1NO08G03780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|371128gene_3711Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03780.1NO08G03780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03780 ID=NO08G03780|Name=NO08G03780|organism=Nannochloropsis oceanica|type=gene|length=1321bp
CAAAGGCGACGCACGCAGATACTTCCACCAGCCACCATCTCTGCACACCG
CAGCCGGGCAAATGAGCATACGTGGTGTGCCCCAGCTTCGTTCCTTGCTG
CTACGGTACTCGGACCGAGACGGCTCCAGCCGGGCCATAAGgtaaggagg
gatgaagggaaggagaaggggtatagtgaggagaggcgaggagtggtaga
cgccccttagtagacggcggcagacaagtctcaggcgcagttcgcccacc
atgcaacatccaccacagGGACTACATTGGATCGCGGCTGGTGGCCTTTG
CACAGGCGCACGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAATGCA
CACCCCGTGGTCCAGGCCGATTACGgtacgtgtggattagacgcgaggaa
ggtggacacgaacagaaagaaatgggaatgaaaacaggactgaacggttg
gaaaagtacctgtcgtaagtttgccaggtcgtcttcattcttgggagaca
gtgtctctcgcttccaccgccatcaccaccacctcatccagcttcctccc
tccctttcttcctttcctctctatctttcgcacagCCTTCGGGGAGCCCA
AGGTAGTATGTGTTCGGACGGCCGAAACGGCGGAGGATGTGGAGGCGGTA
ATTCTTGCTCTGCGAAATACCACTGGTAGGAAAGTCAAGCCCTTGCGGAA
GCCGGTGGTGTCGAGACTGCCTAGCATTCAGgtagggagtgagggagaag
ggagatggatgaaatgtaggaatagagattcatagagagtgccgaatgta
attgttgagatgctcctagctacatggcttctgtcttggcaaccacacgg
atatatgtaacccaaagcaatttattcctgaaaaaatacagGGAATGTGG
GATCCGCGCATGCCACTGCACAAGGAGAAAGTTACGTTGGAGCACGGCCC
GGAAGCGTGAGAAGAATAGCAGTTGAGAAGAAGAGCAGTCATCATGAAAT
AGATACGGGCAAGACGAGACGAGGGTGAGCGGGTGGATGGGTCTTGAGGC
CATCAGCTTGATGAGGAACTTCAAATTTGTGATTTGAAATGTAAAAAAAG
AAGGAATGACAGTGGCATTACCACGATACGTATTCCCCGGCCAGATCGAC
GCGCGAAGGAAGCAGTGCGCGACAGGTGGTTGTTGCTGTGCGGTATGCTC
TCCATCTGGACGCGAAGCATCAATTTCAATTACGCGCACGGCAGTCAGCC
ATAGCAAGGAGAGATAGCCAAGCCATGGCATAAAAAAAATCCTCGATGCA
AACTATAGACAACCCAATCGG
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protein sequence of NO08G03780.1

>NO08G03780.1-protein ID=NO08G03780.1-protein|Name=NO08G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTEL
KRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLR
KPVVSRLPSIQGMWDPRMPLHKEKVTLEHGPEA*
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Synonyms
Publications