NO08G03740, NO08G03740 (gene) Nannochloropsis oceanica

Overview
NameNO08G03740
Unique NameNO08G03740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2066
Alignment locationchr8:1053604..1055669 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1053604..1055669 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03740 vs. NCBI_GenBank
Match: XP_005854004.1 (hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526] >EKU22359.1 hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 256.9 bits (655), Expect = 1.500e-64
Identity = 199/333 (59.76%), Postives = 226/333 (67.87%), Query Frame = 0 
Query:   72 PPAAVDLTQALKDAQRETIVVNGREFAGDPQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLLVRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGEGGKEGGVGMQ--AQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLL---------NGF------------------LSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGLECKKDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVLGAGEGGVNGLFVLRGFHGRSPWYGK 376
            PPAAVD+ QA KDAQRET+V+NGR F+GDP GLQ EMHRLV PLVVD ETATLLCQDILRASSRTASGGDSYV+ +SLLVR GNLLTPA A SS+PI+I+I    G V I A N Y+LHWDM  +  G  GKEG    +  ++     WQ Y+D    GGR G  T KK  G L         NGF                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               GE+++L TLLEVRLDVL+R+  R+++VW +E E+ P SFLVLGAGEG VNG + L GF GR+PWY K
Sbjct:    1 PPAAVDVLQAWKDAQRETVVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYID----GGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLVLGAGEGKVNGTYFLHGFQGRAPWYMK 329
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BLAST of NO08G03740 vs. NCBI_GenBank
Match: EWM26840.1 (hypothetical protein Naga_101932g1 [Nannochloropsis gaditana])

HSP 1 Score: 161.0 bits (406), Expect = 1.200e-35
Identity = 153/269 (56.88%), Postives = 174/269 (64.68%), Query Frame = 0 
Query:  108 MHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLLVRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGEGGKEGGVGMQ--AQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLL---------NGF-----------------LSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGLECKKDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFL 349
            MHRLV PLVVD ETATLLCQDILRASSRTASGGDSYV+ +SLLVR GNLLTPA A SS+PI+I+I    G V I A N Y+LHWDM  +  G  GKEG    +  ++     WQ Y+D    GGR G  T KK  G L         NGF                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               GE+++L TLLEVRLDVL+R+  R+++VW +E E+ P SFL
Sbjct:    1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYID----GGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL 265
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BLAST of NO08G03740 vs. NCBI_GenBank
Match: CBJ31547.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.9 bits (315), Expect = 4.100e-25
Identity = 129/321 (40.19%), Postives = 168/321 (52.34%), Query Frame = 0 
Query:   61 FHSSLIAIPLPPPAAVDLTQALKDAQRETIVVNGREFAGDPQGLQEEMHRLVNPLVVDVETAT-LLCQDILRASSRTASGGDSYVVASSLLVR--RGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGEGGKEGGVGMQAQIQAQSWQYYLDGGGRGGR-----RGEGTLKKAVGLLNGFLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGLECKKDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVLGAGEGGVNGLFVLRGFHGRSPWY 374
            F S+L+ I LPPP  VD  QA KDAQRE+I +NGR F G+   L E +  L++PLVV  ET T  +C DI+RASSRT+SGGD+Y V ++LL R   G+LLTP+ + SS PI I++    G V I  ENR++L  +             G+GM    Q  S       G +G       R    L + V                             XXXXXXXXXXXXXXXXXXXXXXXX            ++E   + L   +EV L +L  S +RRL+V   ++ER PP  ++LGAG    NG + L GF   +P+Y
Sbjct:   41 FGSTLLGIMLPPPGPVDYDQAWKDAQRESIKMNGRLFEGNVDELLETLRGLIDPLVVGDETLTRAVCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSS-PIGISVASADGEVVITVENRFVLRRNAM----------QGLGMGEPHQQSS----ASSGEKGTLKERMVRAREQLVEHVEQTAEQFRKMTARKEVWGGPGWSVDDVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDEAGGISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFY 346
The following BLAST results are available for this feature:
BLAST of NO08G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854004.11.500e-6459.76hypothetical protein NGA_0481900, partial [Nannoch... [more]
EWM26840.11.200e-3556.88hypothetical protein Naga_101932g1 [Nannochloropsi... [more]
CBJ31547.14.100e-2540.19conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008631NSK008631Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03740.1NO08G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669628gene_3708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101932g1gene3698Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03740.1NO08G03740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03740 ID=NO08G03740|Name=NO08G03740|organism=Nannochloropsis oceanica|type=gene|length=2066bp
ATGGACTACTCTGGGATGACTGACCCCCTTCCTCCTTCCAGCGACAGCAG
CAGCAGCAACAGTAACGGGGGAGGAGAGAACTTCCTCCTTCGTTGCCTCG
ACGGACAAGTCAAGCTTGCGCTACAAGCCCAGGTTGCCATTGCGAAGAAT
ATCGACAGCTTCCTCACCCTGCTTCATCTTTTCCATTCCTCTCTCATCGC
CATCCCCCTCCCTCCCCCAGCGGCGGTCGACTTGACCCAGGCGTTGAAAG
ATGCGCAAAGGGAGACGATTGTGGTTAATGGGAGGGAATTTGCGGGCGAC
CCGCAGGGGTTACAGGAAGAAATGCATCGACTGGTAAACCCCCTGGTAGT
GGACGTGGAAACTGCCACCCTCCTTTGTCAGGACATCCTGAGAGCCTCCT
CTCGAACGGCGTCGGGAGgtagggtgatgtccaatcttcgtgtttcctct
cttccaccctccgtgcctctgcctctgtcttccctctcctctctcaatcc
ttcttgtcgagtggcacgacaccgcctgtcttgtcctccctcaccctatt
tccctccctccctccctccctccctccctccctcagGCGATTCGTACGTC
GTTGCCTCCTCCCTTCTAGTCCGTCGTGGTAACCTGCTCACCCCTGCCGC
CGCTGAATCCTCCCTCCCCATCACAATAAACATCGACCCGGTAGTAGGCT
CGGTTCATATCATCGCGGAAAATAGGTACATCTTGCACTGGGATATGTTC
GGGGAGGACAAGGGCGAGGGTGGGAAGGAGGGAGGGGTGGGGATGCAGGC
ACAGATCCAGGCACAGAGCTGGCAGTATTATCTGGATGGCGGAGGGAGGG
GAGGAAGAAGAGGAGAAGGGACATTGAAGAAAGCGGTGGGATTGTTGAAC
GGGTTTCTGAGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAAACA
CGGGCACCAGATAATGGGAGAAGAAGGAGAGGCGAGCAGCACCAGTAGAA
GTAGCAGCAGTTGCAATCGCTCACCCCGAGGAGGGGAGGGTGGGGAGGAG
GAAGGATTGGAATGCAAAAAAGACGGCGAAGGAGAGGAGGAGGGGGAGAA
GGTCATTTTACACACACTCCTAGAAGTGCGGTTGGATGTCTTGAGCCGGA
GTTGTAGGAGGAGGTTGAAGGTATGGAGTGAAGAGGTGGAGCGTGCTCCC
CCTTCTTTCTTAGTGCTGGGCGCTGGGGAGGGAGGCGTGAATGGACTTTT
TGTCCTGAGGGGCTTTCACGGTAGAAGTCCCTGGTACGGGAAGGAGGGGG
AGGAGGGGGAGGAAGGGAGGGAAGGAGGAAGGGGGGGGGGAAGGCCATCG
GTGGCGGTTGTGAAGGATGAGAGgtggcttgcgtataaattgggagaagg
agggggggggggggattggcaaagctaacagatttggtgtctggtcgtcc
cataagcagTGGGAGTGGCAGCAGTAACAGTAAAAAGGGCAGCAGCAGCA
GCAGTAGCAGTAGTGGTACTAGTGGCAGCAGCAGCAGTAAGAACAGCAAG
GTCGCTGGGAAAATCACCATCAGCAGCAGCAGCATCACCGAGCTATCTTC
TTTGCCCTTCTTCGCCTCTTCCGTCGCTATGGCTGCAGGGAAAGGGGAGG
AGAACGAGGGCAGCAGCAGCGCTACCAACACCACCAGTACCACCAGCAGC
AGCAGCAACAGCAGTGCGCCTCCCTCTTCTTCCTCCTTCTACTCCCCTCC
CTTTTCATCCTCTTCCTGTAACGGCGGATGGTGCATTGTCTCGCTCCTGG
AGAAGAAGAAGAAAAAAGGCAAGCTTCTCTACTACCACCGACAGAAATCG
GTACTCCCCCCTTTGGAGGGGTGGGAGGTTGTGGGGGAGGAAAAAGATAG
GGAGCGGGAAAGGGAGAGAGAAAAAGAGAGGGAAAAGGAGGGGGGGCGTG
TTCTCCCACCTGCTCCTACATTGATGCCTCACGTCGAAAAGGTGAAGATT
GGAGCAGGAGGAGGAAGGGGGGGAACGCTTCCCGCAGCAAGGATGGGGAG
TAGCCGTTGGGAGTGA
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protein sequence of NO08G03740.1

>NO08G03740.1-protein ID=NO08G03740.1-protein|Name=NO08G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MDYSGMTDPLPPSSDSSSSNSNGGGENFLLRCLDGQVKLALQAQVAIAKN
IDSFLTLLHLFHSSLIAIPLPPPAAVDLTQALKDAQRETIVVNGREFAGD
PQGLQEEMHRLVNPLVVDVETATLLCQDILRASSRTASGGDSYVVASSLL
VRRGNLLTPAAAESSLPITINIDPVVGSVHIIAENRYILHWDMFGEDKGE
GGKEGGVGMQAQIQAQSWQYYLDGGGRGGRRGEGTLKKAVGLLNGFLSGQ
QQQQQQQQQKHGHQIMGEEGEASSTSRSSSSCNRSPRGGEGGEEEGLECK
KDGEGEEEGEKVILHTLLEVRLDVLSRSCRRRLKVWSEEVERAPPSFLVL
GAGEGGVNGLFVLRGFHGRSPWYGKEGEEGEEGREGGRGGGRPSVAVVKD
ESGSGSSNSKKGSSSSSSSSGTSGSSSSKNSKVAGKITISSSSITELSSL
PFFASSVAMAAGKGEENEGSSSATNTTSTTSSSSNSSAPPSSSSFYSPPF
SSSSCNGGWCIVSLLEKKKKKGKLLYYHRQKSVLPPLEGWEVVGEEKDRE
REREREKEREKEGGRVLPPAPTLMPHVEKVKIGAGGGRGGTLPAARMGSS
RWE*
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Synonyms
Publications