NO08G03730, NO08G03730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03730 vs. NCBI_GenBank
Match: XP_005854003.1 (glycine cleavage system h protein [Nannochloropsis gaditana CCMP526] >EKU22358.1 glycine cleavage system h protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 238.0 bits (606), Expect = 2.500e-59 Identity = 120/149 (80.54%), Postives = 134/149 (89.93%), Query Frame = 0 Query: 52 MLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 MLA ATR +ARR+A + Q + RTLA+TRYATSHEWVKLDGD+ATVGIT FAAKALGDVVYVDLPEVGASF+KGDPFGSVESVKAASDVYAP+SGEI+ESNA+LS+DPGNVN AAETDAWF KFKVTDK+EF+ALMD+ AYK HTE Sbjct: 1 MLATATRHVARRIACSSTVFQPTLRRTLATTRYATSHEWVKLDGDIATVGITDFAAKALGDVVYVDLPEVGASFSKGDPFGSVESVKAASDVYAPVSGEIIESNASLSEDPGNVNNAAETDAWFTKFKVTDKAEFEALMDAAAYKKHTE 149
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_092809222.1 (glycine cleavage system protein GcvH [Afifella marina] >SCZ22467.1 glycine cleavage system H protein [Afifella marina DSM 2698]) HSP 1 Score: 154.1 bits (388), Expect = 4.700e-34 Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202 +TRY+ HEWV+LDGD AT+GIT FAA+ LGDVV+V+LPE G + AKGD VESVKAAS+VYAP+SGE+ ++NAAL D P VN+A E D WF + K++DKSE D LMD AYKA E+ Sbjct: 2 TTRYSKEHEWVRLDGDTATIGITPFAAEQLGDVVFVELPEKGKTIAKGDEVAVVESVKAASEVYAPVSGEVTDANAALEDAPQTVNEAPEGDGWFFRVKLSDKSELDGLMDEAAYKAFCEE 122
BLAST of NO08G03730 vs. NCBI_GenBank
Match: PKP80487.1 (glycine cleavage system protein H [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-18]) HSP 1 Score: 153.3 bits (386), Expect = 8.100e-34 Identity = 76/120 (63.33%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 +T Y HEWV+++GD TVGIT +AA LGDVVYV+LPE GAS AKGD F VESVKAASDVYAPISG ++ESN L+D P V++AAETDAWF + K+ D SE D LMD AY A+ E Sbjct: 2 TTYYTKDHEWVRVEGDTGTVGITTYAAGQLGDVVYVELPEAGASLAKGDGFAVVESVKAASDVYAPISGAVLESNTGLADAPEKVSEAAETDAWFVRIKIADTSELDGLMDLAAYTAYCE 121
BLAST of NO08G03730 vs. NCBI_GenBank
Match: GAX14280.1 (glycine cleavage system H protein [Fistulifera solaris]) HSP 1 Score: 152.9 bits (385), Expect = 1.100e-33 Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0 Query: 53 LAIATRQLARRVAFTPAARQLNITR---TLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202 ++ TR +ARR +F AR +T S+ + +HE+VK+DG + T GIT FA ALGD+V+VDLPEVG FAKG+ FGSVESVKAASDVYAP+SG +VE N LSD+PG VN AE AWF K ++ D++E +L+ ++AYKAH E+ Sbjct: 4 VSFLTRTVARR-SFDSVARMSRVTHLGGVRFSSYFTPAHEYVKVDGKIGTCGITDFAQAALGDIVFVDLPEVGDEFAKGESFGSVESVKAASDVYAPVSGTVVEVNEVLSDEPGMVNSEAEGKAWFVKIEIKDEAELKSLLSADAYKAHCEE 154
BLAST of NO08G03730 vs. NCBI_GenBank
Match: GAX20044.1 (glycine cleavage system H protein [Fistulifera solaris]) HSP 1 Score: 151.8 bits (382), Expect = 2.300e-33 Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 0 Query: 53 LAIATRQLARRVAFTPAARQLNITR---TLASTRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK 202 ++ TR +ARR +F AR +T S+ + +HE+VK+DG + T GIT FA ALGD+V+VDLPEVG FAKG+ FGSVESVKAASDVYAP+SG +VE N LSD+PG VN AE AWF K ++ D++E +LM+++AYK H E+ Sbjct: 4 VSFLTRTVARR-SFDSVARMSRVTHLGGARFSSYFTPAHEYVKVDGKIGTCGITDFAQAALGDIVFVDLPEVGDEFAKGESFGSVESVKAASDVYAPVSGTVVEVNEILSDEPGMVNSEAEGKAWFVKIEMKDEAELKSLMNADAYKTHCEE 154
BLAST of NO08G03730 vs. NCBI_GenBank
Match: OYW89159.1 (glycine cleavage system protein H [Hyphomonas sp. 32-62-5] >OZB19059.1 glycine cleavage system protein H [Hyphomonas sp. 34-62-18]) HSP 1 Score: 151.4 bits (381), Expect = 3.100e-33 Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 +T Y HEW++++GD TVGIT +AA LGDVVYV+LPE GA AKGD F VESVKAASDVYAPISG +VE+N LSD P VN+AAE DAWF + K+ D E D LMD AY A+ E Sbjct: 2 TTYYTKDHEWIRVEGDTGTVGITAYAAGQLGDVVYVELPESGAKIAKGDGFAVVESVKAASDVYAPISGSVVEANTGLSDAPEKVNEAAEGDAWFVRIKIADTGELDGLMDEAAYTAYCE 121
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_087119808.1 (glycine cleavage system protein GcvH [Brevundimonas sp. SH203] >GAW40657.1 Glycine cleavage system H protein [Brevundimonas sp. SH203]) HSP 1 Score: 151.0 bits (380), Expect = 4.000e-33 Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 0 Query: 83 RYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKA 198 ++ HEWV LDGD+ATVGI+ AA ALGDVV+V++PEVG + +KGD F VESVKAASDVYAP+SGE++E+N ALS P VN AAE D WFAK KV+D +E DALMD AY A Sbjct: 2 KFTKDHEWVSLDGDIATVGISKHAADALGDVVFVEVPEVGKTVSKGDSFAVVESVKAASDVYAPVSGEVIEANDALSTAPETVNSAAEADGWFAKIKVSDAAELDALMDQAAYDA 116
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_067220684.1 (glycine cleavage system protein GcvH [Stappia indica]) HSP 1 Score: 150.6 bits (379), Expect = 5.200e-33 Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 STRY HEW+ ++GDVATVGIT +A + LGDVV+V+LPEVG +KGD VESVKAAS+VYAP+ GEIVE+N L+D+PG VN+ E AWF K +++D S+ D+LMD AYKAH E Sbjct: 2 STRYTEDHEWITVEGDVATVGITDYAQQQLGDVVFVELPEVGRKVSKGDEAAVVESVKAASEVYAPLDGEIVEANGVLADEPGKVNEDPEGAAWFVKIRLSDTSQLDSLMDEAAYKAHVE 121
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_035598119.1 (glycine cleavage system protein GcvH [Hyphomonas polymorpha] >KCZ98298.1 glycine cleavage system H protein [Hyphomonas polymorpha PS728]) HSP 1 Score: 150.2 bits (378), Expect = 6.800e-33 Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 +T Y HEW++++GD TVGIT +AA LGDVVYV+LPE GA AKGD F VESVKAASDVYAPISG +VE+N L+D P VN+AAE DAWF + K+ D E D LMD AY A+ E Sbjct: 2 TTYYTKDHEWIRVEGDTGTVGITAYAAGQLGDVVYVELPESGAKIAKGDGFAVVESVKAASDVYAPISGSVVEANTGLADAPEKVNEAAEGDAWFVRIKIADAGELDGLMDEAAYTAYCE 121
BLAST of NO08G03730 vs. NCBI_GenBank
Match: WP_067339736.1 (glycine cleavage system protein GcvH [Stappia indica] >SOC09660.1 glycine cleavage system H protein [Stappia indica]) HSP 1 Score: 150.2 bits (378), Expect = 6.800e-33 Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 81 STRYATSHEWVKLDGDVATVGITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEIVESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTE 201 STRY HEW+ ++GDVATVGIT +A + LGDVV+V+LPEVG +KGD VESVKAAS+VYAP+ GEIVE+N L+D+PG VN+ E AWF K ++ D S+ D+LMD AYKAH E Sbjct: 2 STRYTEDHEWITVEGDVATVGITDYAQQQLGDVVFVELPEVGRKVSKGDEAAVVESVKAASEVYAPLDGEIVEANGVLADEPGKVNEDPEGAAWFVKIRLADTSQLDSLMDEAAYKAHVE 121 The following BLAST results are available for this feature:
BLAST of NO08G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03730 ID=NO08G03730|Name=NO08G03730|organism=Nannochloropsis oceanica|type=gene|length=1215bpback to top protein sequence of NO08G03730.1 >NO08G03730.1-protein ID=NO08G03730.1-protein|Name=NO08G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bpback to top Synonyms
Publications
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