NO08G03700, NO08G03700 (gene) Nannochloropsis oceanica

Overview
NameNO08G03700
Unique NameNO08G03700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1818
Alignment locationchr8:1047677..1049494 +

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Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1047677..1049494 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO08G03700 vs. NCBI_GenBank
Match: EWM26803.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 0
Query:   53 PPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEEKVEEKLKRVSKATVSSGREEKGVGGKGLEEEGK 184
            P   V  SA + AVL LYRRIIKNAKVFPSKGRDRM+KEIREEFR+NAKETDP+K+++HRSMAI+GLSQLQAYTGL D+DMDWSVTME APLGGLSEEKVEEKL+RV +  ++SG++     G+  ++  K
Sbjct:   32 PHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_005854002.1 (hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526] >EKU22357.1 hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 173.3 bits (438), Expect = 6.900e-40
Identity = 90/131 (68.70%), Postives = 109/131 (83.21%), Query Frame = 0
Query:   53 PPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEEKVEEKLKRVSKATVSSGREEKGVGGKGLEEEGK 184
            P   V  SA + AVL LYRRIIKNAKVFPSKGRDRM+KEIREEFR+NAKE+DP+K+++HRSMAI+GLSQLQAYTGL D+DMDWSVTME APLGGLSEEKVEEKL+RV +  ++SG++     G+  ++  K
Sbjct:    2 PHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKESDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 132          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: CBJ26781.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 2.400e-16
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 0
Query:   66 VLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEE 151
            +L LYR II+NA+V+PSK RDR++KEIR EFR NA E+DP K+   R +A+KGL QL  YT +  + +D SVT+E  PLGG +++
Sbjct:    6 MLSLYRHIIRNARVYPSKSRDRVLKEIRLEFRKNATESDPVKVDEQRQLAMKGLQQLMVYTKMDTSGLDMSVTLEQNPLGGPTQQ 90          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_008871187.1 (hypothetical protein H310_07567 [Aphanomyces invadans] >ETW00162.1 hypothetical protein H310_07567 [Aphanomyces invadans])

HSP 1 Score: 71.6 bits (174), Expect = 2.800e-9
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0
Query:   61 AVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146
            + +  V Q+YRR+++ AK FPS  RD++V++I+ EF  N   TDP KI+   ++AIKG+ QL  Y  L      WSV ME  P G
Sbjct:    2 SASPTVPQIYRRVLQLAKKFPSIKRDQLVEDIKAEFHDNKVLTDPVKIKEKVNIAIKGIQQLNQYVSLDPNAQHWSVDMEKDPFG 86          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: KXZ49360.1 (hypothetical protein GPECTOR_22g954 [Gonium pectorale])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 0
Query:   60 SAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAY 126
            SA   +VL LYR+I+K AK FPS+ RD +++EI+ EFR N   T+P+++++ R++A +GLS LQAY
Sbjct:    2 SANAPSVLSLYRQILKAAKYFPSRKRDNIIREIKAEFRANKALTEPERVQHCRTLAERGLSDLQAY 67          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: OQR88963.1 (hypothetical protein THRCLA_22772 [Thraustotheca clavata])

HSP 1 Score: 68.6 bits (166), Expect = 2.400e-8
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 0
Query:   62 VTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146
            V  +V Q+YRR++K A+ FPS  RD++V +I+ EF  N   TDP KI+    +AIKG+ QL  Y  L      W+V ME  P G
Sbjct:    9 VRQSVPQIYRRVLKLAQRFPSIKRDQLVLDIKAEFHENKTLTDPAKIQEKIGVAIKGIEQLGQYVNLDPRAHSWTVEMEKDPFG 92          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_008619294.1 (hypothetical protein SDRG_14912 [Saprolegnia diclina VS20] >EQC27291.1 hypothetical protein SDRG_14912 [Saprolegnia diclina VS20])

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146
            +V Q+YRR++K A+ FPS  +D++V +I+ EF  NA  TD  KI+   ++A+KG+ QL  Y  L  T   W+V ME  P G
Sbjct:    5 SVPQIYRRVLKLAQRFPSIKKDQLVADIKAEFHENASLTDAAKIQEKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_012207654.1 (hypothetical protein SPRG_12883 [Saprolegnia parasitica CBS 223.65] >KDO21642.1 hypothetical protein SPRG_12883 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146
            +V Q+YRR++K A+ FPS  +D++V +I+ EF  NA  TD  KI+   ++A+KG+ QL  Y  L  T   W+V ME  P G
Sbjct:    5 SVPQIYRRVLKLAQRFPSIKKDQLVADIKAEFHENASLTDAAKIQEKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: OQR88133.1 (hypothetical protein ACHHYP_20331 [Achlya hypogyna])

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:   65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146
            +V Q+YRR++K A  FPS  +D++V +I+ EF  N   TDP KI+   ++A+KG+ QL  Y  L  T   W+V ME  P G
Sbjct:    5 SVPQIYRRVLKLASRFPSIKKDQLVLDIKAEFHENKTLTDPAKIQQKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85          
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_001693795.1 (predicted protein [Chlamydomonas reinhardtii] >PNW73934.1 hypothetical protein CHLRE_13g578800v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0
Query:   59 TSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAY 126
            ++A    VL LYR I+K AK FPSK R  +++EI+EEFR N   +DPD+I + R +A +GLS LQAY
Sbjct:    2 SAASPPGVLHLYRHILKAAKYFPSKKRTSIIREIKEEFRSNKTLSDPDRIAHCRVLAERGLSDLQAY 68          
The following BLAST results are available for this feature:
BLAST of NO08G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
EWM26803.12.400e-4069.47Complex 1 LYR protein [Nannochloropsis gaditana][more]
XP_005854002.16.900e-4068.70hypothetical protein NGA_0419902 [Nannochloropsis ... [more]
CBJ26781.12.400e-1654.12conserved unknown protein [Ectocarpus siliculosus][more]
XP_008871187.12.800e-943.53hypothetical protein H310_07567 [Aphanomyces invad... [more]
KXZ49360.11.100e-850.00hypothetical protein GPECTOR_22g954 [Gonium pector... [more]
OQR88963.12.400e-844.05hypothetical protein THRCLA_22772 [Thraustotheca c... [more]
XP_008619294.13.100e-843.21hypothetical protein SDRG_14912 [Saprolegnia dicli... [more]
XP_012207654.13.100e-843.21hypothetical protein SPRG_12883 [Saprolegnia paras... [more]
OQR88133.13.100e-843.21hypothetical protein ACHHYP_20331 [Achlya hypogyna... [more]
XP_001693795.14.100e-852.24predicted protein [Chlamydomonas reinhardtii] >PNW... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008635NSK008635Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03700.1NO08G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637959gene_3705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03700.1NO08G03700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03700 ID=NO08G03700|Name=NO08G03700|organism=Nannochloropsis oceanica|type=gene|length=1818bp
GTCCCCATCGTATGCACTTCTTTTAAACTCCAGACTTTTTTTCGGAGCTA
CGGCTGCGATTCATCTCAGAACAGCAGCACCAGTTTCCAGACCCTCATCT
TCTTCCCATTTATTCTCTACGACCTCATCTCGTAGCCTGCCTTTTGCGTG
TTTCCCCTCCTTACCCCTCCCCTCGCTCTCCTCCGACCTCTTCTGCTGGA
TGCCAGCAACCACCCCTGCAAGCACAGGCCGTGACATTTCAGACGCATTG
TCCGGCATCTCACTACTGCTGATTTCGTTCACATTCTCTCCTATTTTTGT
GAATGTTGTGGTCGCCGCTGCTCCTGCTGCTGTTGCTACTAATGGTGGTA
GTGATACTGGTGACGTGGGCGACGCGTGCGTAAATGTCGGCGTGGCAATA
TTGCGACGCTCTACACCAAAGTCCAACTCCTCCTCGTACCCATACAAATC
ATCAAAAATGTCCTCTATCATGTCATGATCGTCATCTTCTTCCTCCTCCC
TATCCTCGAAGTGACGGCTGCGTCGTCCTCGCCGTCGTCGGGGCAACTCC
GTATACTGGACTTCCAGTTCTTGTCCTGTCCCTCCACTTTCTCCTTCTCC
TGCTCTTCTTCTTAGATACCGATGCAAGGCCCGAACCAAGTAGACAAAAA
AGAGGGCCAACAAGGCACCCGCAACCGTTGAGAGGAAGAGAGGCAAGGTC
CCATGCCCCTCAATAATGCGGTCGAGCATGGGAGACGGGGCATTCGGAAC
AGCCTCCATTTAGATGTGTGCGGCAAATCTTGGCCAGGGAGTCGACCTAG
GGATACAGACGTAGCCTGCACCCCCTTCTTCTCGTCGCTACCTTCGCTGT
AGCGGAGTTGTCCCTGTGATGGAGCGTGGGAGTACAGGGAGGATGCTTGA
GACGGGAGAGGTAGGACGGTGATTTTTTTTGCGCTTCAGCGACGCTTCCG
TTGCTGACATTTCCATGACTCATGAGCCTACACACTGCTGCACTTATGGT
TATATTCACTCCTTGTAATGCTACACAAAGGCAGGACCGGTACGCCAACC
GAACCCCGCAGGGAAAACCTCCTCACCTCCCGCAAACAGCAAGCAAACCC
TTGCTTTCTTTCCATCGTACAATGCCACCTCCTGCCCCTGTCGCCACCTC
GGCAGTCACCACCGCCGTCCTCCAGCTGTATCGTCGCATTATCAAGAATG
CCAAGGTCTTTCCCAGCAAAGGGCGTGACCGCATGGTCAAGGAAATCCGA
GAGGgtaagtaattatgttcggatggctatgcacaggggcgactgatagt
aatacgaaatagtggcgttacatcttgcatgcttgccttgtttctccttc
ttatagcctgtaaagattgtgccccatgagttcccttggcacttcgctgg
cttaagctctctcctttctgatgcctcacccacccgttcccgaagcttca
attcggccctcctcaatccattggccacgcctcatacacatcccacctct
acaaacagAGTTCCGCGTCAACGCCAAAGAAACTGATCCCGATAAGATCC
GGAACCATCGCAGCATGGCCATCAAAGGCCTTAGTCAGCTACAAGCCTAC
ACAGGATTGGTGGACACAGACATGGACTGGTCCGTTACCATGGAGCCCGC
ACCGTTAGGAGGGCTATCGGAGGAAAAGGTAGAGGAGAAGCTAAAGCGTG
TGTCTAAGGCGACAGTCAGCTCCGGGAGAGAAGAGAAGGGGGTGGGTGGG
AAGGGGCTGGAGGAAGAGGGAAAGAGATGACGAGGGGGGGAAGCAAAGAA
GATGGGAGATTGAAGAGA
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protein sequence of NO08G03700.1

>NO08G03700.1-protein ID=NO08G03700.1-protein|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MSLHTAALMVIFTPCNATQRQDRYANRTPQGKPPHLPQTASKPLLSFHRT
MPPPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNA
KETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEE
KVEEKLKRVSKATVSSGREEKGVGGKGLEEEGKR*
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Synonyms
Publications