NO08G03700, NO08G03700 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03700 vs. NCBI_GenBank
Match: EWM26803.1 (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 174.9 bits (442), Expect = 2.400e-40 Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 0 Query: 53 PPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEEKVEEKLKRVSKATVSSGREEKGVGGKGLEEEGK 184 P V SA + AVL LYRRIIKNAKVFPSKGRDRM+KEIREEFR+NAKETDP+K+++HRSMAI+GLSQLQAYTGL D+DMDWSVTME APLGGLSEEKVEEKL+RV + ++SG++ G+ ++ K Sbjct: 32 PHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_005854002.1 (hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526] >EKU22357.1 hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 173.3 bits (438), Expect = 6.900e-40 Identity = 90/131 (68.70%), Postives = 109/131 (83.21%), Query Frame = 0 Query: 53 PPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEEKVEEKLKRVSKATVSSGREEKGVGGKGLEEEGK 184 P V SA + AVL LYRRIIKNAKVFPSKGRDRM+KEIREEFR+NAKE+DP+K+++HRSMAI+GLSQLQAYTGL D+DMDWSVTME APLGGLSEEKVEEKL+RV + ++SG++ G+ ++ K Sbjct: 2 PHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKESDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 132
BLAST of NO08G03700 vs. NCBI_GenBank
Match: CBJ26781.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.1 bits (235), Expect = 2.400e-16 Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 0 Query: 66 VLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEE 151 +L LYR II+NA+V+PSK RDR++KEIR EFR NA E+DP K+ R +A+KGL QL YT + + +D SVT+E PLGG +++ Sbjct: 6 MLSLYRHIIRNARVYPSKSRDRVLKEIRLEFRKNATESDPVKVDEQRQLAMKGLQQLMVYTKMDTSGLDMSVTLEQNPLGGPTQQ 90
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_008871187.1 (hypothetical protein H310_07567 [Aphanomyces invadans] >ETW00162.1 hypothetical protein H310_07567 [Aphanomyces invadans]) HSP 1 Score: 71.6 bits (174), Expect = 2.800e-9 Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0 Query: 61 AVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146 + + V Q+YRR+++ AK FPS RD++V++I+ EF N TDP KI+ ++AIKG+ QL Y L WSV ME P G Sbjct: 2 SASPTVPQIYRRVLQLAKKFPSIKRDQLVEDIKAEFHDNKVLTDPVKIKEKVNIAIKGIQQLNQYVSLDPNAQHWSVDMEKDPFG 86
BLAST of NO08G03700 vs. NCBI_GenBank
Match: KXZ49360.1 (hypothetical protein GPECTOR_22g954 [Gonium pectorale]) HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8 Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 0 Query: 60 SAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAY 126 SA +VL LYR+I+K AK FPS+ RD +++EI+ EFR N T+P+++++ R++A +GLS LQAY Sbjct: 2 SANAPSVLSLYRQILKAAKYFPSRKRDNIIREIKAEFRANKALTEPERVQHCRTLAERGLSDLQAY 67
BLAST of NO08G03700 vs. NCBI_GenBank
Match: OQR88963.1 (hypothetical protein THRCLA_22772 [Thraustotheca clavata]) HSP 1 Score: 68.6 bits (166), Expect = 2.400e-8 Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 0 Query: 62 VTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146 V +V Q+YRR++K A+ FPS RD++V +I+ EF N TDP KI+ +AIKG+ QL Y L W+V ME P G Sbjct: 9 VRQSVPQIYRRVLKLAQRFPSIKRDQLVLDIKAEFHENKTLTDPAKIQEKIGVAIKGIEQLGQYVNLDPRAHSWTVEMEKDPFG 92
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_008619294.1 (hypothetical protein SDRG_14912 [Saprolegnia diclina VS20] >EQC27291.1 hypothetical protein SDRG_14912 [Saprolegnia diclina VS20]) HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146 +V Q+YRR++K A+ FPS +D++V +I+ EF NA TD KI+ ++A+KG+ QL Y L T W+V ME P G Sbjct: 5 SVPQIYRRVLKLAQRFPSIKKDQLVADIKAEFHENASLTDAAKIQEKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_012207654.1 (hypothetical protein SPRG_12883 [Saprolegnia parasitica CBS 223.65] >KDO21642.1 hypothetical protein SPRG_12883 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146 +V Q+YRR++K A+ FPS +D++V +I+ EF NA TD KI+ ++A+KG+ QL Y L T W+V ME P G Sbjct: 5 SVPQIYRRVLKLAQRFPSIKKDQLVADIKAEFHENASLTDAAKIQEKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85
BLAST of NO08G03700 vs. NCBI_GenBank
Match: OQR88133.1 (hypothetical protein ACHHYP_20331 [Achlya hypogyna]) HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8 Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 65 AVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLG 146 +V Q+YRR++K A FPS +D++V +I+ EF N TDP KI+ ++A+KG+ QL Y L T W+V ME P G Sbjct: 5 SVPQIYRRVLKLASRFPSIKKDQLVLDIKAEFHENKTLTDPAKIQQKIAIAVKGIEQLGQYVHLDPTAHSWTVEMEKDPFG 85
BLAST of NO08G03700 vs. NCBI_GenBank
Match: XP_001693795.1 (predicted protein [Chlamydomonas reinhardtii] >PNW73934.1 hypothetical protein CHLRE_13g578800v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0 Query: 59 TSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNAKETDPDKIRNHRSMAIKGLSQLQAY 126 ++A VL LYR I+K AK FPSK R +++EI+EEFR N +DPD+I + R +A +GLS LQAY Sbjct: 2 SAASPPGVLHLYRHILKAAKYFPSKKRTSIIREIKEEFRSNKTLSDPDRIAHCRVLAERGLSDLQAY 68 The following BLAST results are available for this feature:
BLAST of NO08G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 16
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03700 ID=NO08G03700|Name=NO08G03700|organism=Nannochloropsis oceanica|type=gene|length=1818bpback to top protein sequence of NO08G03700.1 >NO08G03700.1-protein ID=NO08G03700.1-protein|Name=NO08G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bpback to top Synonyms
Publications
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