NO08G03690, NO08G03690 (gene) Nannochloropsis oceanica

Overview
NameNO08G03690
Unique NameNO08G03690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr8:1046260..1047629 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1046260..1047629 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G03690 vs. NCBI_GenBank
Match: XP_005855052.1 (hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526] >EKU21305.1 hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.1 bits (806), Expect = 3.400e-82
Identity = 193/349 (55.30%), Postives = 232/349 (66.48%), Query Frame = 0
Query:    9 DPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCCQKELESTRARTKLMSKLRAVDITRQAMDRRKGVVG--LSEEQHQHEHGAGCCALMADYPALARLRVTRDGGVGTRQDYDDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIGLHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFG---------GGEG---LRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKM 344
            DPNA+H  PGD       K  +   E S  ER KE YLHPCCQKELE+TRARTKLM+KL A DITR AM+RR+ V G   + +QHQH HG GCC+L  DYPAL+ LR  + GG        ++                  XXXXXXXXXXXXXXXX  RELE GDDGGF EIRRAE++R+A E AE+Q LG+GLHT + P R L +V    C LV+HCYDPY   SA LDL+LE LA  YPGTRF+RT FG         GG+G   LR++LRVPAP     Y KSV+L++++G LVDSCYD+GRRFG+ +EGR     VY EAVEQWL+HC+VLER  + V+ AR+M
Sbjct:   10 DPNAFHQLPGDYASE--NKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPEQANDQHQHVHGTGCCSLTVDYPALSDLREKQGGGSRAM----EVGMPVGSGDGDEQALLRQAXXXXXXXXXXXXXXXXWLRELEDGDDGGFQEIRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGR-----VYGEAVEQWLQHCRVLERASVCVDDARRM 347          
BLAST of NO08G03690 vs. NCBI_GenBank
Match: EWM26796.1 (hypothetical protein Naga_100018g60 [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 4.100e-80
Identity = 187/338 (55.33%), Postives = 225/338 (66.57%), Query Frame = 0
Query:    9 DPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCCQKELESTRARTKLMSKLRAVDITRQAMDRRKGVV--GLSEEQHQHEHGAGCCALMADYPALARLRVTRDGGVGTRQDYDDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIGLHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFG---------GGEG---LRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVLER 333
            DPNA+H  PGD       K  +   E S  ER KE YLHPCCQKELE+TRARTKLM+KL A DITR AM+RR+ V   G + +QHQH HG GCC+L  DYPAL+ LR  + GG        ++                  XXXXXXXXXXXXXXXX  +ELE GDDGGF E+RRAE++R+A E AE+Q LG+GLHT + P R L +V    C LV+HCYDPY   SA LDL+LE LA  YPGTRF+RT FG         GG+G   LR++LRVPAP     Y KSV+L++++G LVDSCYD+GRRFG+ +EGR     VY EAVEQWL+HC+VLER
Sbjct:   29 DPNAFHQLPGDYASE--NKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAM----EVGMPVGSGDGDEQALLRQAXXXXXXXXXXXXXXXXWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGR-----VYGEAVEQWLQHCRVLER 355          
BLAST of NO08G03690 vs. NCBI_GenBank
Match: EJK71258.1 (hypothetical protein THAOC_07321, partial [Thalassiosira oceanica])

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-16
Identity = 119/423 (28.13%), Postives = 166/423 (39.24%), Query Frame = 0
Query:   17 PGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCCQKELESTRARTKLMSKLRAVDITRQAMDRRKGVVGLSEEQHQH--------EHGAGCCALM------ADYPALARLRVTRDGGVGTRQDYDDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIGLHTELPPNRVLDLV---------YLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFGGGEGLRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYG-RRFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVE---RARKMRLLLKAQMGRKGGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGCYKPFIHSHVGME 413
            P  ++  GLG   DV   P+ A  + +  L  CCQ+E+ES R +  + + LR  D   +A D R+    LS    ++        E G GC           +Y  LA  R  R           D +                                    E   G    +   RRAEL   A+      Y G G+H +L P R L  V           R     +H +D Y   SA LDL LE LA  +PGT+FVR+   G   L  A    +P         VLL+LR+G +V   +  G R F  GR       EV   AVE WL    VL  +   ++   R R    +L   +  +  KG   G GM   +   G E++ ++E       E E+Y+CG++GC K F H HVG++
Sbjct:   59 PNKQMFEGLGAPVDV--APTQASEDFDPTLDSCCQREIESNRKQNAVEAALRVHDRVAKAEDSRRHQQTLSSNWREYNPANLVRGEFGDGCRCCYDPNEDGGEYELLAEARRERTNARPDEPSELDGDGESKDPVGSASDSDSSDDEFDYLLD-----------EDLPGAHSEYDNSRRAELESLAKRVEVANYHGYGVHRQLHPKRALSAVGYGFDQKRETFRPRGAALHLFDAYSPLSASLDLCLEDLASKHPGTKFVRSI--GVSTLTYAEGSDSPADWRRGDLPVLLALREGRVV--AWSSGLRDFECGR------SEVDTRAVELWLESAGVLLTDVPPLDLLCRIRPEEEMLLESIRHERSKGRGFG-GMMSQL---GLEKEMDIE-------EDEYYDCGVKGCCKQFYHEHVGIQ 447          
BLAST of NO08G03690 vs. NCBI_GenBank
Match: XP_002291859.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90710.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.1 bits (209), Expect = 5.700e-13
Identity = 77/248 (31.05%), Postives = 111/248 (44.76%), Query Frame = 0
Query:  180 RRAELMRQAQEAAEIQYLGIGLHTELPPNRVL---------DLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFGGGEGLRQALRVPAPGSGSGYTKS---VLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVL--ERERMD-VERARKMRLLLKAQMGRKGGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGCYKPFIHSHVGME 413
            RRAEL   A     I++ G G+H ++ P RV          D   +     VVH YD Y   S  LDL LE +A  YPGT+F+R     G G+   L     G    + K    ++++L++G +V   +  G R      G +    V   AVEQWL H  VL     +MD V R R    +L   + +   +GG           A  + R E++E+        + Y+CG+ GC K F H HVG++
Sbjct:  185 RRAELESMAHHYEVIRFHGYGVHRQMHPKRVFASAGYGSSTDRDRVTVKGSVVHLYDAYSPLSVSLDLCLEDMASRYPGTKFLR-----GLGVTSLLFAEGDGGDQKWKKGDLPMVVALKEGRVV--AFSSGLRDFYNAGGDQHNERVEPRAVEQWLEHAGVLFDTPPQMDAVCRIRPEEEMLLENLMKLNMQGGLINA------EAPTRSRVEDMEE--------QRYDCGVNGCNKSFFHEHVGVK 411          
BLAST of NO08G03690 vs. NCBI_GenBank
Match: XP_002291860.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90711.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.2 bits (204), Expect = 2.200e-12
Identity = 78/251 (31.08%), Postives = 115/251 (45.82%), Query Frame = 0
Query:  180 RRAELMRQAQEAAEIQYLGIGLHTELPPNRVL----------DLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFGGGEGLRQALRVPAPGSGSGYTKS---VLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKMRLLLKAQMGRK-GGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGCYKPFIHSHVGME-GIQ 416
            RRAEL  +A++   ++  G G+H ++ P+RVL          D V  R    VVH YD Y   S  LDL LEG+A  YPGT+FVR     G G    L V    +   +      +LL+L++G++V         F  G       G+V   AVEQWL    VL      +    ++R   + ++       GG +  GM         ++D E+ +        + Y CG++GC K F H HVG++ G+Q
Sbjct:  154 RRAELEAKAEQYQILRQYGYGVHRQIHPSRVLASAGFGGSCEDGVVPR--GAVVHLYDAYSPLSVSLDLCLEGMASRYPGTKFVR-----GLGKASLLSVNDDDTSHRWKNGHLPMLLALKEGAVVS--------FSSGLRDFNNAGQVESGAVEQWLGIAGVLSDTPPPMGAVCRVRSEEELRLDNVINLHGGLSCDGM------ASTDKDAEIVN--------DRYNCGVDGCNKSFFHQHVGVKNGVQ 375          
BLAST of NO08G03690 vs. NCBI_GenBank
Match: CBN74357.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-9
Identity = 133/382 (34.82%), Postives = 172/382 (45.03%), Query Frame = 0
Query:   47 HPCCQKELESTRARTKLMSKLRAVDITRQAMDRRKGVV--GLSEEQHQHEHGAGCCALMADYPALARLRVTRDGGVGTRQDYDDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIGLHTELPPNRVLDLV--YLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGTRFVRTPFGGGEGLRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGRRFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKMRLLLKAQMGRKGGKGGRTGVGMRMAITAGGQERDEEVEDG-GEDEDEAEF-YECGLEGCYKPFIHSH-VGMEGIQMPKEFG 422
            HPCCQK+ E+     KL S L  VD+++ A   RK     GL+        G        DYPAL                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L+  +     ++R   +   A     ++ LG GLH E+P + V +      R   +V+H YD   E  A LDL LE  A  Y GTRFVR   G    +   +R+          +   L+   G +  +  +   +FG   +G   G      AVE+WL     LE +  D            A    +GG  G  G                  +DG G+DE+ AE  Y+CGL+GC+K F H H +   G  +PK FG
Sbjct:   38 HPCCQKDSEAKARALKLRSALDKVDLSQIAERARKAAFSSGLAGPPASRSGG-------GDYPALREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLLDDPEITRMAQMRVEAMHADATRLQNLRALGFGLHIEVPESGVEEASRGQFRGAGVVLHLYDADSELGASLDLLLEAKAGSYMGTRFVRCRLGPESAVAATMRI---------RRVPALACYKGGVRTAYTEQLSQFGNS-DGVDPG------AVERWLVASGTLEFDPPD------------ANALCEGGGLGVVG------------------DDGDGDDEESAEARYDCGLDGCHKAFKHDHFLAAGGGGLPKGFG 366          
The following BLAST results are available for this feature:
BLAST of NO08G03690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
XP_005855052.13.400e-8255.30hypothetical protein NGA_2012310, partial [Nannoch... [more]
EWM26796.14.100e-8055.33hypothetical protein Naga_100018g60 [Nannochlorops... [more]
EJK71258.11.400e-1628.13hypothetical protein THAOC_07321, partial [Thalass... [more]
XP_002291859.15.700e-1331.05predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002291860.12.200e-1231.08predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBN74357.11.700e-934.82conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008637NSK008637Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03690.1NO08G03690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553175gene_3703Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g60gene3704Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03690.1NO08G03690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03690 ID=NO08G03690|Name=NO08G03690|organism=Nannochloropsis oceanica|type=gene|length=1370bp
ATGGAAATCCCTTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCC
AGGAGACGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGG
AACCTTCGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGC
CAAAAGGAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGTCGAAGTT
GCGTGCTGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGG
TGGGGTTGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGT
GCGTTGATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGA
CGGAGGGGTAGGAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGA
GCAGCAGCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGC
GAGGACGAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGA
ATTGGAGGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAAT
TGATGCGCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGG
CTGCACACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCG
GTGTTGTCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTG
CCGTGTTGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACG
CGGTTTGTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTT
ACGAGTGCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGT
TGAGCTTGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGA
AGGTTTGGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTT
GGAGGCGGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGA
GGATGGATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAG
ATGGGGAGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGAT
GGCGATTACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGG
GGGAGGACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGC
TACAAGCCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCC
GAAAGAATTTGGCGCGATTGGGGAGCATTGACGTAGGACAAGCAACTCCC
ACAACAACACAAAAGAAGAGGATCTCAGAGCAGTAACGAGTAGGAAATAA
GAATAAAAATATCACACAGT
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protein sequence of NO08G03690.1

>NO08G03690.1-protein ID=NO08G03690.1-protein|Name=NO08G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MEIPSQMADPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCC
QKELESTRARTKLMSKLRAVDITRQAMDRRKGVVGLSEEQHQHEHGAGCC
ALMADYPALARLRVTRDGGVGTRQDYDDMERRRSSSGISSREVVASYEEG
EDEEDSEEDGDDDILRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIG
LHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGT
RFVRTPFGGGEGLRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGR
RFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKMRLLLKAQ
MGRKGGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGC
YKPFIHSHVGMEGIQMPKEFGAIGEH*
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Synonyms
Publications