NO08G03640, NO08G03640 (gene) Nannochloropsis oceanica

Overview
NameNO08G03640
Unique NameNO08G03640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1463
Alignment locationchr8:1017917..1019379 -

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Properties
Property NameValue
Descriptionnuclear factor Y, subunit C4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1017917..1019379 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003700DNA-binding transcription factor activity
GO:0046982protein heterodimerization activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
GO:0016602CCAAT-binding factor complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR027170NFYC/HAP5_su
IPR003958CBFA_NFYB_domain
Homology
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: KZM19453.1 (sequence-specific DNA binding [Ascochyta rabiei])

HSP 1 Score: 86.7 bits (213), Expect = 1.900e-13
Identity = 46/118 (38.98%), Postives = 76/118 (64.41%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRSRIWLAIASLERAYGG 385
            E + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE  H   KRG+ +    +  ++++   GG
Sbjct:   91 EHDYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAH-PHKRGSTQGTTAVQSSAVQVPPGG 204
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: ORY00308.1 (histone-fold-containing protein [Clohesyomyces aquaticus])

HSP 1 Score: 86.3 bits (212), Expect = 2.400e-13
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRS 370
            E + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE  H   + G   S
Sbjct:   93 EHDYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSGAQSS 192
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: XP_001799329.1 (hypothetical protein SNOG_09026 [Parastagonospora nodorum SN15] >EAT83218.2 hypothetical protein SNOG_09026 [Parastagonospora nodorum SN15])

HSP 1 Score: 85.5 bits (210), Expect = 4.200e-13
Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRSRI 372
            E + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE  H   + G   + +
Sbjct:  124 EHDYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSGGQNAAV 225
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: KUI59312.1 (Transcriptional activator HAP5 [Valsa mali var. pyri])

HSP 1 Score: 85.5 bits (210), Expect = 4.200e-13
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = 0 
Query:  269 EMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRS 370
            + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  ++ SDMFDFL+D+VPRE     SKR T +S
Sbjct:   80 DYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEAATHSKRQTGQS 177
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: KXX78654.1 (Transcriptional activator HAP5 [Madurella mycetomatis])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 41/101 (40.59%), Postives = 69/101 (68.32%), Query Frame = 0 
Query:  269 EMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRS 370
            + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  ++ SDMFDFL+D+VPRE     +KR +N++
Sbjct:   80 DYKMHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEASAHAKRASNQA 177
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: OAL02798.1 (histone-fold-containing protein [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRS 370
            E + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE  H   KR T ++
Sbjct:   87 EHDYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAH-PHKRATGQN 185
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: OCK85493.1 (histone-fold-containing protein [Lepidopterella palustris CBS 459.81])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRG 366
            E + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE  H   + G
Sbjct:   95 EHDYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSG 190
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: XP_021880623.1 (histone-fold-containing protein [Lobosporangium transversale] >ORZ13839.1 histone-fold-containing protein [Lobosporangium transversale])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 0 
Query:  265 QVEAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNR 369
            Q +++ K   LP ARI++ ++++      K +  E  +L +KACE+ + +++ RA++ AEE+KR+ +QR DVA  +S SD FDFL+D+VPRE     +KR TNR
Sbjct:   76 QFDSDFKNHPLPLARIKKVMKSD---PDVKMISAEAPILFSKACEIFICEITRRAWLHAEENKRRTLQRSDVASAVSRSDQFDFLIDIVPREEPPKMNKRSTNR 176
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: XP_001229885.1 (hypothetical protein CHGG_03369 [Chaetomium globosum CBS 148.51] >EAQ91434.1 hypothetical protein CHGG_03369 [Chaetomium globosum CBS 148.51])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 0 
Query:  250 HYLRVLQRTRCLTPAQVEA---EMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRS 370
            HY  VL      T + +E+   + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  ++ SDMFDFL+D+VPRE     +KR TN++
Sbjct:   62 HYKDVLTAYWQHTISHLESDTHDYKMHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEASSHAKRTTNQT 181
[Close]
BLAST of NO08G03640 vs. NCBI_GenBank
Match: XP_003347192.1 (uncharacterized protein SMAC_08084 [Sordaria macrospora k-hell] >CCC13963.1 unnamed protein product [Sordaria macrospora k-hell])

HSP 1 Score: 84.7 bits (208), Expect = 7.100e-13
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:  269 EMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGT 367
            + K  QLP ARI++ ++A+    + K +  E  +L AK C++ + +L+ RA++ AEE+KR+ +QR D+A  +S SDMFDFL+D+VPRE     +KR T
Sbjct:   82 DYKLHQLPLARIKKVMKAD---PEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEASTHAKRAT 176
The following BLAST results are available for this feature:
BLAST of NO08G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KZM19453.11.900e-1338.98sequence-specific DNA binding [Ascochyta rabiei][more]
ORY00308.12.400e-1341.75histone-fold-containing protein [Clohesyomyces aqu... [more]
XP_001799329.14.200e-1340.00hypothetical protein SNOG_09026 [Parastagonospora ... [more]
KUI59312.14.200e-1342.57Transcriptional activator HAP5 [Valsa mali var. py... [more]
KXX78654.15.400e-1340.59Transcriptional activator HAP5 [Madurella mycetoma... [more]
OAL02798.15.400e-1342.72histone-fold-containing protein [Stagonospora sp. ... [more]
OCK85493.15.400e-1342.42histone-fold-containing protein [Lepidopterella pa... [more]
XP_021880623.15.400e-1341.35histone-fold-containing protein [Lobosporangium tr... [more]
XP_001229885.15.400e-1339.02hypothetical protein CHGG_03369 [Chaetomium globos... [more]
XP_003347192.17.100e-1342.86uncharacterized protein SMAC_08084 [Sordaria macro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008640NSK008640Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03640.1NO08G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03640.1NO08G03640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03640 ID=NO08G03640|Name=NO08G03640|organism=Nannochloropsis oceanica|type=gene|length=1463bp
GCCTCCCAATACCACCACCCCTCTCGAAGACATCACTTCTCGGAGCAGCA
CCCATGGATTTACGTGCCGCACCCTCTTTCTGCAGTCCTTTGCCGTAGAT
TTATTATTCGTGGCGCCTCCTCATTTTCTTGTTGAAATCTTGTCGTTCTG
CTATTGGTCATACTTTCAAACCTCACGCCCCACACGCATTTTAAGGCCCG
CCCGCAACGCACCACACACACACACTAAAGGTACCCACTATGCCACTGGC
GATGAAGAAGGAGAGGGTCGCCGCATCAGCAGCGCCATCACGTCGCGGGG
GCCGTGGCGGAGGACGGGGGCATAGCAGCAGTGCTCCCTGCAGCGATCGT
CCTTCTTGCCTCCCCACCAGCACAATGAGTGAGTGCCAGGCCTTGCATAC
CTCTGACCAGCAGTACCACATCCACAGCCATGTACCACCCTGCCGCATTT
CTTGTCCCCTAAGCCCACCCATGGCTTCAGTTACTGCACGTAGTAAGGCT
CGTACCCGAGGAAGAGGGCAAGAGCGCGGACGAGGGCGAGGTCGAGGCAA
GGGTACAGGACGGCAGAGTTTGCGTCGGAGTTTTGAGGAGATTAAGAAGG
GGGAGGAGAAGGAGGACGAGGACGAGGAGGAGAAAGAAGAGGGGGAGGGA
GAGGGGGAGGAAGACATATCTATAGCCATGAAAAGAATGGGCACCAAGGG
CGATAAGCGAAGGGCCAGCCACATCCTGAGTCGCCTTAACAGTAGCAACT
GGGGCAGCGGCCGGGGAAATGAGAGAAAAACAGAGGAGGAGCAGCAGATC
AGCGACCTCAGCAGCGAGGGGAATGACGATGAGGACGATGACGAAGACGA
GAACTGGCCGTCCTCCTCCTTGTTTCCTTCTTCTGACGGCGAAGATGAAG
ATGACACCCGGGATGCCACCGCTTTGTGGGAGCAGCAGCAGTACCAAGCC
CGACTGATTCGAAGGGTGGAGGCCCACGAGGCGAAGCATTACCTGAGGGT
GTTGCAACGCACCCGTTGTCTAACCCCTGCTCAGGTCGAGGCGGAGATGA
AGACCATCCAGTTGCCTAAGGCGAGAATACGCCGCTTCATTCGTGCGGAG
ATGTATGGAGAAAAGAATAAGACCGTGTTGGGCGAGGTACAGCTGTTGAT
GGCCAAAGCATGTGAGATGCTGGTGGAGGACTTGAGTCATCGGGCATATG
TATGCGCAGAAGAAGATAAGAGGAAGTGCGTGCAGAGGTGTGACGTGGCA
AGGGGAATCAGCATCAGTGATATGTTTGACTTTTTGGTTGATCTGGTCCC
ACGGGAGTACATGCATATTAAGAGTAAGAGGGGCACTAATAGGAGCAGAA
TCTGGCTGGCAATCGCTTCGTTGGAGAGAGCATATGGAGGGGCACTGGGA
GGAGAGGAGGAGGAAAGAGGGGTAGGGGGGGGGGGAGAGAGGAGGAGAAG
GAAGGTGGGATAG
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protein sequence of NO08G03640.1

>NO08G03640.1-protein ID=NO08G03640.1-protein|Name=NO08G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MPLAMKKERVAASAAPSRRGGRGGGRGHSSSAPCSDRPSCLPTSTMSECQ
ALHTSDQQYHIHSHVPPCRISCPLSPPMASVTARSKARTRGRGQERGRGR
GRGKGTGRQSLRRSFEEIKKGEEKEDEDEEEKEEGEGEGEEDISIAMKRM
GTKGDKRRASHILSRLNSSNWGSGRGNERKTEEEQQISDLSSEGNDDEDD
DEDENWPSSSLFPSSDGEDEDDTRDATALWEQQQYQARLIRRVEAHEAKH
YLRVLQRTRCLTPAQVEAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEV
QLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLV
DLVPREYMHIKSKRGTNRSRIWLAIASLERAYGGALGGEEEERGVGGGGE
RRRRKVG*
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Synonyms
Publications