NO08G03500, NO08G03500 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_005854284.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU22075.1 light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 469.2 bits (1206), Expect = 8.100e-129 Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 M+VIALLSLAS+ASAFIAP PLARRA+ +VRMAADDDLS ALPFDKRPPNLDGSL GDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFAN+NP GALTTVP+AGLWQIAATV AIELFR+NRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAG YFPDGV Sbjct: 1 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 246
BLAST of NO08G03500 vs. NCBI_GenBank
Match: EWM26813.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 469.2 bits (1206), Expect = 8.100e-129 Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 M+VIALLSLAS+ASAFIAP PLARRA+ +VRMAADDDLS ALPFDKRPPNLDGSL GDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFAN+NP GALTTVP+AGLWQIAATV AIELFR+NRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAG YFPDGV Sbjct: 47 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 292
BLAST of NO08G03500 vs. NCBI_GenBank
Match: CEL98288.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 315.8 bits (808), Expect = 1.100e-82 Identity = 161/259 (62.16%), Postives = 198/259 (76.45%), Query Frame = 0 Query: 1 MKVIALLSLASV-ASAFI------APAPLARRASR-SVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDV-PEAVSKAG----NYFPDGV 247 MKV+A ++L +V A+AF+ +PL + +R S+ + D S+ALP DKRPPNLDGSL GD GFDPVGFSNN PR WLIGG RSLKWYREAE+VH RVAMLAALGW+FP I+HLPGN VGVDAFA NP ALTTVP GLWQIA TV+AIE FR+ RV+RG+KEAGDLGLGQGEGRWNPFGF + E+EY Q++EIKNGRLAM+ I+G++LQA+VTG+G+++Q+G F + P AG +FP+G+ Sbjct: 2 MKVVAAVALLAVCANAFVPQGVLKRDSPLRKSLTRPSMAEMGESDRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIGGDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQIGEGFGLGPGYRLPAGTGLQKFFPEGL 260
BLAST of NO08G03500 vs. NCBI_GenBank
Match: CBJ31718.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 266.2 bits (679), Expect = 1.000e-67 Identity = 140/250 (56.00%), Postives = 174/250 (69.60%), Query Frame = 0 Query: 3 VIALLSLASV--ASAFI--APAPLA--RRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDK-EAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYF 243 V A SL ++ ASAF+ A PLA R A + MAA + S+++P D P LDG + GDVGFDP GF+NNPP W+ G G+ +KWYREAE+ HGRVAMLAA GW+FP IYH PGN +G D FA +NPL A +P+AG QI T+ +E R+NR IR D AGD+GLGQGEGRWNPF FNY+EEEYAEKQLQEIK+GR AM+GI G+ Q V G+GI+ QLG +F P++V+KAG +F Sbjct: 5 VAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFF 253
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_009034395.1 (hypothetical protein AURANDRAFT_71070 [Aureococcus anophagefferens] >EGB10808.1 hypothetical protein AURANDRAFT_71070 [Aureococcus anophagefferens]) HSP 1 Score: 237.3 bits (604), Expect = 5.200e-59 Identity = 133/253 (52.57%), Postives = 168/253 (66.40%), Query Frame = 0 Query: 1 MKVIALLSLASVASAF------IAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSG-RSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 MK+ +L A+AF APA A SR + S+ALP+ + NLDGSL GDVGFDP+GFS P W G G SLK +REAE++HGR+A LA LGW+FP +YH PG + DAFA +NP A+ +PSAG QI A ++++E+ R+NR+ GDLGLGQGEGRWNPFGF+Y+ EEY +KQLQEIK+ RLAM+GI GL ++S T G++QQLG SF PE VSKAG YFP+GV Sbjct: 1 MKLALSATLIGSAAAFGGFGGKKAPAKAAAPVSRGTGPSIP---SIALPWTE--TNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGSLKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYFPEGV 244
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_002287377.1 (fucoxanthin chl a/c protein, lhca clade [Thalassiosira pseudonana CCMP1335] >EED94820.1 fucoxanthin chl a/c protein, lhca clade [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 197.6 bits (501), Expect = 4.600e-47 Identity = 117/257 (45.53%), Postives = 159/257 (61.87%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFS-------NNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDV-GVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKE--AGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 M +A LSL + ASAF AP A+ +S + + ++ ALPF PP LDGSL GDVGFDP+GFS NNP + G ++W REAE+ HGR+A LA +G+++P ++ PGNE+ G DA++ VNPL A+ +PS ++QI + +E R+ R+ K+ +GD+GL G WNPF NYS EEYAEKQLQEIK+ RLAM+G GL QA +G+ IV QL +F PE +KAG + P G+ Sbjct: 1 MYKLACLSLIASASAF---AP-AQTGKQSTSLNSWNEAPRALPFGSAPPTLDGSLVGDVGFDPIGFSTAPFASFNNP--IYQEGNFMTDVQWLREAELTHGRIAQLAVVGFIWPALFGTFPGNENFGGADAYSYVNPLEAINHIPSLAIYQIVGGMAWVEYQRVQRIKEQGKDRISGDIGLAY-PGGWNPFNINYSPEEYAEKQLQEIKHCRLAMLGAFGLFFQALNSGEDIVSQLSPAFAAPEYAAKAGYFLPQGI 250
BLAST of NO08G03500 vs. NCBI_GenBank
Match: OEU09133.1 (fucoxanthin chl a/c protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 195.3 bits (495), Expect = 2.300e-46 Identity = 119/258 (46.12%), Postives = 160/258 (62.02%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARR-ASRSVRMAADDDLSVALPFDKR--PPNLDGSLAGDVGFDPVGFSNNPPRPWL-----IGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIR--GDKEAGDLGLGQGEG-RWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 MK+ LSL + ASAF AP A+ S ++ A D S ALPF + P LDGSL GDVGFDPVGFS P + W G S +KW REAE+ HGR+A LA +G+++P++ PGN+ GVDA++ NP+ ++ VP + QI ++ IE R+ + R D+ GDLGLGQG R NPF +YS EE+ EKQ+QEIK+ RLAM+G GL QA+ +G I Q+GG+ PEAV+KAG + P+G+ Sbjct: 1 MKLTLALSLLASASAF---APAAKTGVSTALGPVAFDRPSAALPFAENGCPATLDGSLPGDVGFDPVGFSTTPIQSWFDSKTAPGNSMSDVKWLREAEVTHGRIAQLAVVGFIYPSVAGTFPGNDWTGVDAYSYKNPIEEISHVPGEAVAQIIFAMSLIEFRRVILISREGPDRLPGDLGLGQGPNERINPFNLDYSPEEFYEKQVQEIKHCRLAMLGAFGLFCQAANSGVDIGTQIGGALVRPEAVAKAGYFLPEGI 255
BLAST of NO08G03500 vs. NCBI_GenBank
Match: GAX18319.1 (light-harvesting complex II chlorophyll a/b binding protein 4 [Fistulifera solaris]) HSP 1 Score: 188.7 bits (478), Expect = 2.100e-44 Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 0 Query: 39 SVALPFDKRPPNLDGSLAGDVGFDPVGFSNN-----PPRPWLIGGSGR--SLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGL----GQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 S A+P + P LDGSL GDVGFDP S P L G L WYREAE++HGR+ M+A LG++ P GNE GVDA++ NPL A++ P A L+QI A ++ +E RI R+I + G GQ EG WNPF FNY+ EEYAEKQLQE+K+ RLAM+G+LGL+ QA+ +G +V QL +F P+ +KAG + P+G+ Sbjct: 128 STAIPGESAPALLDGSLPGDVGFDPCFLSTKADLMAPYFNNLFAGQANIDGLTWYREAELMHGRICMIAVLGFIAPGFGTFGGNEWTGVDAYSETNPLAAISAAPGAALFQIFAFMSILEFRRI-RIIFAEGSNYVAGASQKWGQTEGSWNPFNFNYTPEEYAEKQLQEVKHARLAMIGLLGLIFQANASGVSVVDQLSAAFVTPDYYAKAGYFLPEGI 345
BLAST of NO08G03500 vs. NCBI_GenBank
Match: GAX16656.1 (light-harvesting complex II chlorophyll a/b binding protein 4 [Fistulifera solaris]) HSP 1 Score: 188.7 bits (478), Expect = 2.100e-44 Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 0 Query: 39 SVALPFDKRPPNLDGSLAGDVGFDPVGFSNN-----PPRPWLIGGSGR--SLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGL----GQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 S A+P + P LDGSL GDVGFDP S P L G L WYREAE++HGR+ M+A LG++ P GNE GVDA++ NPL A++ P A L+QI A ++ +E RI R+I + G GQ EG WNPF FNY+ EEYAEKQLQE+K+ RLAM+G+LGL+ QA+ +G +V QL +F P+ +KAG + P+G+ Sbjct: 142 STAIPGESAPALLDGSLPGDVGFDPCFLSTKADLMAPYFNNLFAGQANIDGLTWYREAELMHGRICMIAVLGFIAPGFGTFGGNEWTGVDAYSETNPLAAISAAPGAALFQIFAFMSILEFRRI-RIIFAEGSNYVAGASQKWGQTEGSWNPFNFNYTPEEYAEKQLQEVKHARLAMIGLLGLIFQANASGVSVVDQLSAAFVTPDYYAKAGYFLPEGI 359
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_002182909.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45645.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 178.7 bits (452), Expect = 2.200e-41 Identity = 96/198 (48.48%), Postives = 126/198 (63.64%), Query Frame = 0 Query: 39 SVALPFDKRPPNLDGSLAGDVGFDPVGFS---NNPPRPWLIG-----GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIR--GDKEAGD-LGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 S+A+P++ P LDGSL GDVGFDP S + P+ G S L WYREAE++HGR+ M+A +G++ P GN G DAF+N NPL AL PSA ++QI A + A+E RIN + + + + GD GQG+GRWNP G NYS EEY EKQLQE+K+ RLAMVG+LGLL QA+ +G ++ QL Sbjct: 1 SIAIPYEGAPALLDGSLVGDVGFDPCFLSTKADTVAAPYFNGIFNNEVSIDGLTWYREAELMHGRICMIAVVGFIAPGFGTFEGNAWTGADAFSNTNPLEALGAAPSASIFQIFAFMAALEFRRINIIFQQGNNYQPGDSQRWGQGDGRWNPLGLNYSPEEYEEKQLQEVKHARLAMVGLLGLLFQANASGVNVIDQL 198 The following BLAST results are available for this feature:
BLAST of NO08G03500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03500 ID=NO08G03500|Name=NO08G03500|organism=Nannochloropsis oceanica|type=gene|length=741bpback to top protein sequence of NO08G03500.1 >NO08G03500.1-protein ID=NO08G03500.1-protein|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bpback to top Synonyms
Publications
|