NO08G03380, NO08G03380 (gene) Nannochloropsis oceanica

Overview
NameNO08G03380
Unique NameNO08G03380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr8:934970..936085 -

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Properties
Property NameValue
DescriptionPectin lyase fold/virulence factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:934970..936085 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.300e-69
Identity = 131/206 (63.59%), Postives = 159/206 (77.18%), Query Frame = 0
Query:  166 ADGQGIIEEEMEE--NFIAIHGCTPQTGPQLRLLVETTECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEIGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWREVYTVGGY---VQGDRFILG 367
            A+ +G  EEE     ++IA+HGCTP TG QLR LVET  C VITL PG++YVLD+EI VRR VVI+GRPL+ P+IDAH I RAF VE  G+LDLRFV+ WRGVP  V+ ++Y EL+GGVAWIR GG GVF GC+MLVH+DE+G+VL   +  +T R+YGGFLLLE+GTLRV DCH L+ RPGVL REVYTVGGY   V G+ F+ G
Sbjct:  166 AEEKGXXEEEDASWGDYIAVHGCTPDTGVQLRSLVETGSCPVITLTPGVRYVLDEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLREVYTVGGYILVVSGNLFMTG 371          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM22289.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 3.800e-37
Identity = 77/193 (39.90%), Postives = 119/193 (61.66%), Query Frame = 0
Query:  180 FIAIHGCTPQTGPQLRLLVETTECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEIGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWREVYTVGG---YVQGDRFILGRVW 370
            ++A+ GCTP+   +LR +++ T C  +TL+P   Y + +++++RR V ++GRPL  PIIDAH   RAFLVE GG LD+RFVE  +G    V+  +   L+G   +IRRGGV +F GC    +       L    P+  ++++GG ++ ESGTLRVTDCH    R G+ +RE+  VGG    + G+ ++ G ++
Sbjct:    3 YVAVEGCTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLVIRRRVTLVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYRLRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVAESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIF 195          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-20
Identity = 73/226 (32.30%), Postives = 114/226 (50.44%), Query Frame = 0
Query:  147 LPGLLEIDKYAYARSK---GGLADGQGIIEEEM------EENFIAIHGCTPQTGPQLRLLVE-TTECSVITLMPGMKYVL-----DDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEIG--NVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWREVYTVG 356
            LPG   +D  A   S    G   +  G   E+       + + I+   C PQ+G +LR + E  + C++I+L+PG  Y +     DD+I +    VI+G P+S P ID     R F +  GG LDL+FV  +RG    +I  I   L+GG A +  GG     G V+  +   +G   +L   +    +R++GG + +  G + +T  HF + +PGVL+RE+Y VG
Sbjct:  104 LPGYKVLDGVAEKSSDLIGGVFGEEAGAASEDFFSTMLKDTSLISGSACVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADSKRIFHIVAGGNLDLQFVRTYRG-GGELIATI-PVLRGGTALVELGGRFSAFG-VIFTNAPPVGMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQPGVLFREIYVVG 326          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM23493.1 (hypothetical protein Naga_100198g12 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 7.700e-14
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 0
Query:  185 GCTPQTGPQLRLLVETTECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRG---VPAPVIQDIYD---------ELKGGVAWIRRGGVGVFLGCVMLVHEDEIGNVLFTRNPELTI-----RIYGGFLLLESGTLRVTDCHF 340
            GC    G +L   +E   CS++ L PG  Y L+ EI+VRR V++MG P   P+ID     R+F V EGG LDLRFV+ +     V  P   +I+          E++GG  +I  G +G     V+ + + ++ +    R+   +I     RIYGG + +  G +    C F
Sbjct:  154 GCEVNDGLELTDAIENQSCSIVYLKPGQLYELEREILVRREVIVMGNPSVLPMIDGEDAIRSFHVLEGGFLDLRFVQQFASDGIVREPKPYEIFATTSPRNRVWEIRGGSVFIDEGALGGKFTGVIFIDDPDVEDAA-RRSIRRSIDGDVYRIYGGHVFIVGGRVDFVGCLF 324          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-11
Identity = 55/164 (33.54%), Postives = 76/164 (46.34%), Query Frame = 0
Query:  179 NFIAIHGCTPQTGPQLRLLVET-TECSVITLMPGM--KYVLDDEIIVRRPVVIMGRPLS-PPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEI-GNVLFTRNPELTIRIYGGFLLLESGTLRVTDC 338
            N   +  C PQ G +L+ + E+ + CSVI L  G   KY L   +IV    +++G P+  P I   + +YR F V+ GG LD+RFV  +R  P  V  D    +  GVA +  GG      C+         G V     P    RI GGF+L+  GT     C
Sbjct:  154 NLAGLQVCYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDNGVYRLFEVKPGGSLDIRFVSLFRPSPRKV-DDNLSVIVAGVALVELGGYMRGTACIFRQPAQTFEGFVKSLETPFARKRIVGGFVLVLGGTFFCYGC 316          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: XP_005853964.1 (hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526] >EKU22398.1 hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-11
Identity = 54/179 (30.17%), Postives = 85/179 (47.49%), Query Frame = 0
Query:  178 ENFIAIHGCTPQTGPQLRLLVETTECSVITLMPG--MKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIY-----------DELKGGVAWIRRGGVGV-FLGCVMLVHEDEIGNVLFTRNPELTI---RIYGGFLLLESGTLRVTDCHF 340
            ++F+  + C P  G +L   VE   C ++ L  G    Y LD++I V R V +MG P   P IDA    RAF V  GG L+L+FV   +G     ++D Y            E++GG   +  G +G  F+G   +   ++  +V      ++     RIYGG + + +GT+    C+F
Sbjct:  107 KDFVGQNSCWPADGAELLDAVENQGCELVVLSSGDPDAYALDEDIKVNRYVRVMGNPAVLPQIDAEDAERAFTVGPGGLLELQFVRVRQG--GGTVRDRYGLEGSGSSSVVGEVRGGCVSVEPGALGANFVGVTFIAVANDWDSVQGAIEDQIDFVGGRIYGGHVYVAAGTVNFFGCNF 283          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM24109.1 (hypothetical protein Naga_100286g5 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-11
Identity = 54/179 (30.17%), Postives = 85/179 (47.49%), Query Frame = 0
Query:  178 ENFIAIHGCTPQTGPQLRLLVETTECSVITLMPG--MKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIY-----------DELKGGVAWIRRGGVGV-FLGCVMLVHEDEIGNVLFTRNPELTI---RIYGGFLLLESGTLRVTDCHF 340
            ++F+  + C P  G +L   VE   C ++ L  G    Y LD++I V R V +MG P   P IDA    RAF V  GG L+L+FV   +G     ++D Y            E++GG   +  G +G  F+G   +   ++  +V      ++     RIYGG + + +GT+    C+F
Sbjct:  126 KDFVGQNSCWPADGAELLDAVENQGCELVVLSSGDPDAYALDEDIKVNRYVRVMGNPAVLPQIDAEDAERAFTVGPGGLLELQFVRVRQG--GGTVRDRYGLEGSGSSSVVGEVRGGCVSVEPGALGANFVGVTFIAVANDWDSVQGAIEDQIDFVGGRIYGGHVYVAAGTVNFFGCNF 302          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-11
Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = 0
Query:  180 FIAIHGCTPQTGPQLRLLVETTECSVITLM--PGMKYVLDD--EIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYD------------ELKGGVAWIRRGGVGV-FLGCVML--VHEDEIGNVLFTRNPELT-IRIYGGFLLLESGTLRVTDCHF 340
            F+    C P+   +L++ VE  +C ++ L     M Y+L D  EI+V R V ++G P   P IDA    RAF + EGG L+L++V   +G+   + +D Y             E+KGG   +  G  G  F+G + L  +   E+         ++T  RIYGG + + +GT+R  +CHF
Sbjct:  198 FVGKDTCWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGM--GMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMTNQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHF 375          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: EWM25323.1 (hypothetical protein Naga_100281g10 [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 0
Query:  179 NFIAIHGCTPQTGPQLRLLVET-TECSVITLMPGM--KYVLDDEIIVRRPVVIMGRPLS-PPIIDAHFIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLVHEDEI-GNVLFTRNPELTIRIYGGFLLLESGTLRVTDC 338
            N   +  C PQ G +L+ + E+ + CSVI L  G   KY L   +IV    +++G P+  P I     +YR F V+ GG LD+RFV  +R  P  V +++   +  GVA +  GG      C+           V     P    RI GGF+L+  GT     C
Sbjct:  154 NLAGLQVCYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDKEVYRLFEVKPGGSLDIRFVSLFRPSPRKVDENL-SVIVAGVALVELGGYMRGTACIFRQPAQTFEAFVKSLETPFARKRIVGGFVLVLGGTFFCYGC 316          
BLAST of NO08G03380 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-10
Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = 0
Query:  186 CTPQTGPQLRLLVET-TECSVITLMPGMKYV--LDDEIIVRRPVVIMGRPLSPPIIDAH-FIYRAFLVEEGGKLDLRFVEAWRGVPAPVIQDIYDE---LKGGVAWIRRGGVGVFLGCVMLVHEDE---IGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFL 341
            C P+TGP+L+ +VE+ + CSV+ L  G  Y+  L   ++V   V+I+G P+ PP I     +YR F V  G  +D+RFV  +R    P ++++      +  G   +R G  G F G  ++  +      G V    +P    RI GGF+L+  G      C  +
Sbjct:  163 CYPETGPELKAMVESGSSCSVVILKKGSSYIYLLPSTVMVTSSVIILGHPIDPPQIHPEKGVYRLFDVAAGSHIDIRFVSLFR----PALRNVGGNRSLIVAGCVLVRTG--GYFRGSGVIFRQQAQTFEGFVKGLMDPLAPKRIVGGFVLVAGGAFFCYGCQII 321          
The following BLAST results are available for this feature:
BLAST of NO08G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM26817.11.300e-6963.59Pectin lyase fold/virulence factor [Nannochloropsi... [more]
EWM22289.13.800e-3739.90Pectin lyase fold/virulence factor [Nannochloropsi... [more]
EWM25479.12.500e-2032.30hypothetical protein Naga_100207g1 [Nannochloropsi... [more]
EWM23493.17.700e-1432.56hypothetical protein Naga_100198g12 [Nannochlorops... [more]
XP_005854415.11.200e-1133.54hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853964.11.600e-1130.17hypothetical protein NGA_0462000 [Nannochloropsis ... [more]
EWM24109.11.600e-1130.17hypothetical protein Naga_100286g5 [Nannochloropsi... [more]
EWM26475.11.600e-1131.67hypothetical protein Naga_100045g21 [Nannochlorops... [more]
EWM25323.11.000e-1032.32hypothetical protein Naga_100281g10 [Nannochlorops... [more]
XP_005853421.12.300e-1030.91hypothetical protein NGA_0438900, partial [Nannoch... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03380.1NO08G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03380.1NO08G03380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03380 ID=NO08G03380|Name=NO08G03380|organism=Nannochloropsis oceanica|type=gene|length=1116bp
ATGCCTGCAGCCCCAGCTGCAGTGCCACCAGCGAGCAGTCAAGACGCCGA
CTTCCCGCAACGGTCATCATCATCCCAAGAAGCCCCTCGCGCCCCCAGCC
AACCAGCGGCATCTGCAGCACCACCACCATCACTGCGCGCCCGCCAGCGA
CCAACAATAAGACAAGTTGCCTTCGCGCTTATCATTTTTCTTGGGGTAGT
GGTGGGCGTGGCAAGCATACTAGGGGTACGGAGGCAGTACGCACAACCAT
TCGACGTCCTCTCTTCCGACACAAGCACCACCGATAATGATAAAGGTGGC
ATCATCGAGTCACCATCCTTATCAACCAATTCAAAGCATGCGACCTCGGG
CCCCACCAAAATTAATGCCATCGGGAGCAGCAGCAGCAGCAGTAGTAGTT
CCAGCACCACCACCTCTACCACCCAAGCGGAACATCTCTTGCCCGGTCTT
CTCGAGATTGATAAATATGCTTATGCCAGGAGCAAAGGTGGGCTGGCGGA
CGGTCAAGGAATAATAGAGGAAGAGATGGAAGAGAACTTTATTGCTATTC
ATGGGTGTACGCCACAGACTGGTCCACAGCTTCGACTGCTGGTCGAAACG
ACGGAATGTAGTGTCATTACGCTTATGCCGGGTATGAAATACGTGTTGGA
TGACGAGATTATTGTACGGAGACCCGTAGTGATCATGGGGCGGCCATTGA
GCCCGCCTATTATAGATGCTCATTTCATCTATCGTGCCTTTTTGGTGGAG
GAAGGTGGGAAGTTGGACTTGAGGTTCGTCGAGGCGTGGAGGGGAGTGCC
GGCGCCAGTTATCCAAGACATCTATGATGAGCTGAAGGGGGGGGTTGCGT
GGATCAGAAGGGGGGGGGTAGGGGTCTTCCTGGGGTGTGTGATGCTGGTG
CATGAAGACGAGATCGGGAATGTGCTTTTCACGCGGAACCCGGAATTAAC
TATCCGGATATATGGCGGGTTTTTGTTATTAGAAAGCGGGACATTAAGGG
TTACGGATTGTCATTTTCTAATCAGTCGGCCGGGAGTGTTGTGGAGGGAG
GTATATACGGTTGGGGGGTATGTGCAGGGGGATCGCTTTATCTTGGGGCG
GGTGTGGCGACGTTGA
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protein sequence of NO08G03380.1

>NO08G03380.1-protein ID=NO08G03380.1-protein|Name=NO08G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MPAAPAAVPPASSQDADFPQRSSSSQEAPRAPSQPAASAAPPPSLRARQR
PTIRQVAFALIIFLGVVVGVASILGVRRQYAQPFDVLSSDTSTTDNDKGG
IIESPSLSTNSKHATSGPTKINAIGSSSSSSSSSSTTTSTTQAEHLLPGL
LEIDKYAYARSKGGLADGQGIIEEEMEENFIAIHGCTPQTGPQLRLLVET
TECSVITLMPGMKYVLDDEIIVRRPVVIMGRPLSPPIIDAHFIYRAFLVE
EGGKLDLRFVEAWRGVPAPVIQDIYDELKGGVAWIRRGGVGVFLGCVMLV
HEDEIGNVLFTRNPELTIRIYGGFLLLESGTLRVTDCHFLISRPGVLWRE
VYTVGGYVQGDRFILGRVWRR*
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Synonyms
Publications