NO08G03360, NO08G03360 (gene) Nannochloropsis oceanica

Overview
NameNO08G03360
Unique NameNO08G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3883
Alignment locationchr8:928707..932589 -

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-associated/translation elongation factor EF1B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:928707..932589 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003746translation elongation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR009060UBA-like
IPR036339PUB-like_dom_sf
IPR000626Ubiquitin-like
IPR013536WLM
IPR018997PUB_domain
IPR015940UBA/transl_elong_EF1B_N_euk
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Homology
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETP40926.1 (hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 172.6 bits (436), Expect = 4.400e-39
Identity = 112/295 (37.97%), Postives = 171/295 (57.97%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAF---NQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQML 294
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N     N  G  +GGS        S      +G   RLGG SA  +++L
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDDDSTSRNVSSG--HRLGGGSAGTSRLL 291
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: KUF84593.1 (Ubiquitin and WLM domain-containing protein [Phytophthora nicotianae])

HSP 1 Score: 172.6 bits (436), Expect = 4.400e-39
Identity = 112/295 (37.97%), Postives = 171/295 (57.97%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAF---NQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQML 294
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N     N  G  +GGS        S      +G   RLGG SA  +++L
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDGDSTSRNVSSG--HRLGGGSAGTSRLL 291
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETO71715.1 (hypothetical protein F444_11993 [Phytophthora parasitica P1976])

HSP 1 Score: 171.0 bits (432), Expect = 1.300e-38
Identity = 110/294 (37.41%), Postives = 169/294 (57.48%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDS-TITLGQLGRGTDTVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAF---NQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQML 294
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + +  S  + L +      T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N     N  G  +GGS        S       G   RLGG SA  +++L
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELMVGVQKDAQRLFQKRRRVNCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRRVEKECNELDWTNSGGAAVGGSPAALHDDDSTSRNVSTG--HRLGGGSAGTSRLL 291
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETK83121.1 (hypothetical protein L915_11613 [Phytophthora parasitica])

HSP 1 Score: 170.2 bits (430), Expect = 2.200e-38
Identity = 112/295 (37.97%), Postives = 170/295 (57.63%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAF---NQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQML 294
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N     N  G  +GGS        S       G   RLGG SA  +++L
Sbjct:    3 TLSVNYKGQTYDLSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECNELDWTNSGGAAVGGSPAALHDDDSTSRNVSNG--HRLGGGSAGTSRLL 291
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETL36501.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETL89721.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETP12825.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 165.2 bits (417), Expect = 7.000e-37
Identity = 98/247 (39.68%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVN 249
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECN 245
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETL36503.1 (hypothetical protein, variant 3 [Phytophthora parasitica] >ETP12827.1 hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 165.2 bits (417), Expect = 7.000e-37
Identity = 98/247 (39.68%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVN 249
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECN 245
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: ETL89723.1 (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 165.2 bits (417), Expect = 7.000e-37
Identity = 98/247 (39.68%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVN 249
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECN 245
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: XP_008908147.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN06655.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 165.2 bits (417), Expect = 7.000e-37
Identity = 98/247 (39.68%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVN 249
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECN 245
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: XP_008908149.1 (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETN06657.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 165.2 bits (417), Expect = 7.000e-37
Identity = 98/247 (39.68%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:   13 SLDLSFKNQHHVVTMP--ASTPLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTD--TVKLVLIGTSAAALSAL------ADGPKLVGDVRIINDLGSTGGSDRGI-APILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVN 249
            +L +++K Q + ++ P  +S  + ++QA  E   G+    Q+L  K + + D +  L  L    D  T  L+++G S A +  +       +    + + R + D+      ++GI A    S  + F  ++ L +  ++D A+ IL  LA+D G+L VM K++WSVG L EM P+G VGV  VCV+GLN+NKGQ+ILLRLRTDDL G+RK LSI+KVL+HE++HNVHS+HD++F+ LMR +E+E N
Sbjct:    3 TLSVNYKGQTYALSFPDESSPTIAELQAQIELVVGVQKDAQRLFQKRRRV-DCSDELKLLRDVCDEATPLLLMVGASTAQIEGMKATQTAVEREMKIRESRRVVDISK---RNQGIQARDAVSTNYRFHAIEPLKNFADKDKAQEILERLANDRGILAVMAKHKWSVGVLAEMPPDGKVGVDPVCVLGLNQNKGQKILLRLRTDDLLGFRKFLSIKKVLFHELSHNVHSEHDNKFYQLMRQVEKECN 245
[Close]
BLAST of NO08G03360 vs. NCBI_GenBank
Match: OQR84045.1 (hypothetical protein THRCLA_10868 [Thraustotheca clavata])

HSP 1 Score: 164.9 bits (416), Expect = 9.100e-37
Identity = 107/280 (38.21%), Postives = 156/280 (55.71%), Query Frame = 0 
Query:   32 PLTDIQAMAEAKTGIALIHQKLIHKGKTLTDSTITLGQLGRGTDTVKLVLIGTSAAALSALAD---GPKLVGDVRIINDLGSTGGSDR-GIAPILRSRRHGFQRVDVLPHLPEQDIARRILTELASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILLRLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAFNQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQMLPARVMAGHAALKRL 308
            P+  +     A   +++   +LI +GK L + TI    L    D   + L+G S   +  +       K   ++R    + S    ++   A  L +  + F  +  LP+LP+++ AR ILT LA D G+LHVM K++WSVG L EM+P+G VGV  VCV+GLNENKGQRI LRLRTDDLQG+RK L+I+KVLYHE+ HN   DH+++F+ LMR +E      N+   + G +T I  ++T+       G    LGG    ++    AR+     AL+RL
Sbjct:  673 PIEHVDDFLTALLNVSVDQLRLIVRGKVLGNDTI----LDSNRDHNAVALVGPSQDEIIMMNQQQARAKQEEEIRANRRVVSIAEKNQVATARELAALEYRFHDIQTLPNLPDEEKARAILTSLAHDKGILHVMTKHKWSVGVLAEMFPDGKVGVDPVCVLGLNENKGQRIQLRLRTDDLQGFRKYLTIKKVLYHELTHNDIGDHNNEFYQLMRQVE------NECSSIPGTTTSITISTTTTSTEQAHGNV--LGG---HISYTSDARLFRAQKALERL 937
The following BLAST results are available for this feature:
BLAST of NO08G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETP40926.14.400e-3937.97hypothetical protein, variant 3 [Phytophthora para... [more]
KUF84593.14.400e-3937.97Ubiquitin and WLM domain-containing protein [Phyto... [more]
ETO71715.11.300e-3837.41hypothetical protein F444_11993 [Phytophthora para... [more]
ETK83121.12.200e-3837.97hypothetical protein L915_11613 [Phytophthora para... [more]
ETL36501.17.000e-3739.68hypothetical protein, variant 1 [Phytophthora para... [more]
ETL36503.17.000e-3739.68hypothetical protein, variant 3 [Phytophthora para... [more]
ETL89723.17.000e-3739.68hypothetical protein, variant 3 [Phytophthora para... [more]
XP_008908147.17.000e-3739.68hypothetical protein, variant 1 [Phytophthora para... [more]
XP_008908149.17.000e-3739.68hypothetical protein, variant 3 [Phytophthora para... [more]
OQR84045.19.100e-3738.21hypothetical protein THRCLA_10868 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008681NSK008681Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03360.1NO08G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553126gene_3668Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g26gene3731Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03360.1NO08G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03360 ID=NO08G03360|Name=NO08G03360|organism=Nannochloropsis oceanica|type=gene|length=3883bp
CTTTCGTGTCATCATAAGACATTTCTCGTCACTTAAAACAAATGAGGGCA
TTTGGCTTCTGCAGCTGCTTTGCAATGATTGAAATATCAGCATACATTGC
ACAAAGGCCTCGTACATTGAAGAATCGTAAAGTTCAGATGTTTTACGAGG
CCATCTCTCGAATGATGATTCCAGACCTTGATGTGGCAGACAATATATTC
ATTTTAAGTGGATCGTAAAAGATGTGGTGCATCATCTCAACGGCTCACTG
AACTTCCCCCTTTCATGCTCCACGTCCCTTTTTTCACACGCTCAATCGCG
TCCAAACCTCGCCCTTCATTTACAGCATTGCTGCCACCAGAGCCATGGGA
TCGGATGATTCTGCCGCAGCCAAGCATTTAAGCCTGGACCTAAGCTTTAA
GAACCAACATCACGTCGTGACAATGCCCGCAAGCACTCCCCTCACTGACA
TTCAAGCGATGGCGGAGGCCAAGACCGGCATTGCACTTATCCACCAGAAA
CTAATTCACAAGGGAAAGACCCTCACAGATTCAACCATCACCCTGGGTCA
GCTTGGCAGGGGGACGGACACCGTCAAGCTTGTGCTCATTGGGACTAGCG
CTGCTGCCCTCTCTGCGCTGGCGGACGGCCCCAAGCTGGTTGGCGACGTG
CGCATCATCAATGACCTAGGCAGTACGGGTGGGAGTGACAGGGGCATAGC
TCCCATTTTGCGATCTCGTCGCCACGGGTTCCAGCGCGTGGACGTCTTGC
CCCACTTGCCAGAGCAGGACATAGCGCGGCGCATTCTGACTGAGTTGGCG
TCGGACCCGGGAGTGCTACATGTGATGGAAAAGTACCAGTGGAGCGTGGG
CGCCCTGTGCGAGATGTATCCCGAAGGCTTGGTTGGGGTCAGTACTGTGT
GTGTCATGGgtacgtgctcgtagttttctctccttcctcgcggctatctc
agaaccctaacttctgcgacctcttccctgcctttgtccatgtccagcat
gctcgagcttcaaatttgaacctcaattggaattagaaatccgccgaccc
attcaaattcttttcgtgttctcccccctcttctcagGTCTCAACGAAAA
CAAAGGCCAACGCATCCTCCTACGCCTCCGTACCGACGACCTCCAAGGTT
GGCGCAAGATCCTCAGTATCCGCAAAGTACTCTACCACGAAATGGCGCAT
AATGTCCACTCAGACCACGACGATCAATTTCACATCCTGATGCGTACCAT
CGAACGAGAAGTGAATGCTTTCAACCAGAGCGGGCGTGTCATCGGGGGTT
CGACCTACATTCAAGCTGCCTCGACATCGTGTGGTCCTGCGGCTTTCGCC
GGGGGGTTTGGACGGCTTGGGGGGGCAAGCGCGGATCTGACGCAAATGCT
CCCAGCTAGGGTTATGGCAGGGCACGCAGCTTTGAAGCGACTGTCCGAGG
AGGAGAAAGAGATTGAGGAAGCTTGTGCCTCAGGGCGACATGCTGCACCG
ACGCTTCCGGCTCTTCCTACTCCGTCTCAGGAGGTGGACAATGACAGTAG
TTGCTATAGCAGCAGTAACTATATGGTAGAGTCGGGCGAGGAAGAGGGGA
GGAGATACCCACCCTCGCCGCTCTCACACCATCACCATCCAGAGCTGCAA
GTTGTGGAACCGCCAATGCCGCAGGCGACAGAGGAGGAGCTACGTGGTTT
GGAGAAATCGTCCTCGGTAGCAATTGCACCATCCACCGCACCAGCATCAC
CAACCGCACAAGCGCCGCCCACGCTCCTCTCTGCCATTCCATGGGCTGAG
ACCACTCCCCCCCCTTCTGTTCAAAACGGAAAGGAGATCACCCCGGCTTT
TTCGCGTCAACCACCATCCTCCACATCGCGGCCAGAAGAGGCAGTTGCGT
CCATATCAGCGTCAGTGGAGAAAGCAGACCTCTTTCCACTTGCCCCCCCC
CCTGATGAAATCACTACCAGTAGCATTGTCGCTCCTCCCACTGCTGATGC
AGCAATTCATGACGCAACCGAGCAACTCCTGGGACTAGGATTCGCGGAAA
TAGAGGTACGACGGGCATTGCAGGAATCTGGCGGTGACGTGATGCAAGCC
GCAGATTATCTCCTTATGTCGGCAGAAGCGGAGAAAGATCGAGGGGGGGG
AGGAGAAGAGGGAAGAGGAGAGGGAATGGACAGCGAGGAAGGCGCAGCAG
CAGCAGCGGCAGTTGGTGACTCGGCTTTATCCCACCCATTCAATAGTCGG
CAAGCGCGTGTAATGGATGCTGTCCAACGCCTGGCGCAGCAAACAAGGGG
CGACCGGGAGGTGGCGGCGTTGGCATTCACCACGCTCCACAGTATGCTTC
AATCGCTACTCGACCACCCACAGGAACCGAAATATAAACGCGTACGGTTG
ACGAATGTGAAGTTTCAACGGGCCTTGGGACGGCTCATGCCGGCAATGGA
TTTGTTGAGGGCTGTTGGGTTTGAGGAGCGGGATGGGGGCGCTGTGTTGG
AATACACGAGAAATGACCCCGGGTTGTTGTGGTGGGGGAAGAGTGCTATG
GAAGGAGTACAAGATCAAGCAAGTAAGTTTCTATGACGCGACATCTATGT
GGAAATATTTCTTCGTTGATAGTAGAGTTGATGTAAAGATGGTAACGGGT
GATATGACACAAAAAGAACTATGTACAACGTCGCGCCCTTCTCTCCCTCT
GGTTGCTCGACGCTCGTTTCTGGCTTCACATCTCGTCCATTTTGTCGAGC
CATTAAGACGGACGTGTATCGGTCGTGGAATCGTTTACCATTTAACCTGC
CGGCGGCGTTGCTCGGGTGGGCAGGGCGGAGGAGACGGAGGCTGCAGCCC
ACGAGGGTGGGGTTGGGAGAAAAGCCACGTCGCGCCTAGTGCAAGCGGCG
TGAGCACAAAGCCACCCACCCATACCCTGCCACCACGCTTTGTTTTCCAG
GTCCAAGCTAATGGCCAGAATGCCATGATTCGATTGCCACCTGTTAACTG
CGGCGGCCGTAGTGCGGCCTTTGACACAGAAAGTACGTCGGGGAGGGTGG
GGAGGTTAATGTAGTATATATATGTTTGTATGTTACGTGTCATATTGTTA
TGTTATATGGGCATATAGTTATAGTAATGGTTGCACATTATATAATTATG
CTGAGAAACGGGCTCCAGGCCCGAAGGTAATCCCTATTTTGTCCATAATC
AAGACGCGCTCGTGTGTTTTTTGTGTTCTTACATCACACTACGTGTAGTG
CTACACAGGCCACAATAAGGCTCTAACACCTGCCCGATGGCGTCCAACAT
CCTCAACCTTCTACGGAGTGCCGAGCTTGTCCGTGTGGGTGGCGCTTCGC
ATTCTGCCTCCCCTTTACTAGGTTTTGATGGCATCAAAGGCAAGCTCCTC
CTCATCTATTTCTCTGCAAGATGGTGCCCGCCCTGCCGTGGTTTCACGCC
CAAGCTCAAAAACTTCTATGAGAGAGTTGCAAACGAGAGCCCAATGGAGG
TGGTGTGGGTGTCGTCGGATGACTCTCAAACGGAATGGAATGAGTACGGA
AGCCAGATGGCACCTTACTTGGCAGTGCCTTACGCAAACGACGCCCTCCG
AACGAGGCTCAAGCAAGAGCTGGGTGTATGCGCGGGCAAAGAGCAGGAAA
GTGTGGGGGTGAAGGATAGGAAACGGGGCATCCCTACATTAGCTGTCATT
AAGCTGGACGGAACGCTTGTGACGTTGGAAGGCGCCGAGGAACTGGAGAA
GAGGGGCTTTGATGTGATTAAGGAGTGGGGCGCGTGAAGGAGCGTCAAAG
GAACCATTTCGTATGGTGAAGGAAAATTTAGAGGCGATGAAGGATTGACA
TGTTTTGATATTCTAGTAAAGACGCATTCGTAG
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protein sequence of NO08G03360.1

>NO08G03360.1-protein ID=NO08G03360.1-protein|Name=NO08G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MGSDDSAAAKHLSLDLSFKNQHHVVTMPASTPLTDIQAMAEAKTGIALIH
QKLIHKGKTLTDSTITLGQLGRGTDTVKLVLIGTSAAALSALADGPKLVG
DVRIINDLGSTGGSDRGIAPILRSRRHGFQRVDVLPHLPEQDIARRILTE
LASDPGVLHVMEKYQWSVGALCEMYPEGLVGVSTVCVMGLNENKGQRILL
RLRTDDLQGWRKILSIRKVLYHEMAHNVHSDHDDQFHILMRTIEREVNAF
NQSGRVIGGSTYIQAASTSCGPAAFAGGFGRLGGASADLTQMLPARVMAG
HAALKRLSEEEKEIEEACASGRHAAPTLPALPTPSQEVDNDSSCYSSSNY
MVESGEEEGRRYPPSPLSHHHHPELQVVEPPMPQATEEELRGLEKSSSVA
IAPSTAPASPTAQAPPTLLSAIPWAETTPPPSVQNGKEITPAFSRQPPSS
TSRPEEAVASISASVEKADLFPLAPPPDEITTSSIVAPPTADAAIHDATE
QLLGLGFAEIEVRRALQESGGDVMQAADYLLMSAEAEKDRGGGGEEGRGE
GMDSEEGAAAAAAVGDSALSHPFNSRQARVMDAVQRLAQQTRGDREVAAL
AFTTLHSMLQSLLDHPQEPKYKRVRLTNVKFQRALGRLMPAMDLLRAVGF
EERDGGAVLEYTRNDPGLLWWGKSAMEGVQDQASKFL*
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Synonyms
Publications