NO08G03310, NO08G03310 (gene) Nannochloropsis oceanica

Overview
NameNO08G03310
Unique NameNO08G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2157
Alignment locationchr8:912366..914522 -

Link to JBrowse

Properties
Property NameValue
Description50s ribosomal protein l19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:912366..914522 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR001857Ribosomal_L19
Homology
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BLAST of NO08G03310 vs. NCBI_GenBank
Match: EWM26783.1 (50s ribosomal protein l19 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 7.800e-36
Identity = 93/172 (54.07%), Postives = 114/172 (66.28%), Query Frame = 0 
Query:    4 AARAVGHAWTRLVSSTIM--------GTRSSGGLSSSTMSNTRPISSASXXXXXXXXXXXXXXXIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIPTFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTPILSSIPLYSPFIKSLKV 168
            A RA+   W R  SS ++         +R S G  ++   + +  SS                    T+  KHKTPRKRASS+LAEL+  EH+K ++ANA K+ PTFR GDSIEVKMVTHL+STE DTYRGVVL +R+NGAD+RF LADVFLGTPIL++IPLYSPFIKSLKV
Sbjct:    2 AIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPS-----ETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKV 168
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BLAST of NO08G03310 vs. NCBI_GenBank
Match: EJK58211.1 (hypothetical protein THAOC_21683 [Thalassiosira oceanica])

HSP 1 Score: 64.7 bits (156), Expect = 3.400e-7
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 0 
Query:   66 PKHKTPRKRASSILAELKLAEHAKGLAANADKDIPT-----FRPGDSIEVKM-----VTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTPILSSIPLYSPFIKSLKV 168
            PK K+PRKRAS +  EL++        AN+ K  P      F+ GD++E+++     V +  +   +  RGVVL     G DT   L DV  G P+   + L+SP +KSLKV
Sbjct:  138 PKFKSPRKRASKLFNELQVE-----TVANSTKSKPAVWEVPFKVGDAVELEILDSGGVDNPNNRPLEKIRGVVLGRHNKGLDTSINLRDVLFGEPVERKVKLHSPLVKSLKV 244
The following BLAST results are available for this feature:
BLAST of NO08G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26783.17.800e-3654.0750s ribosomal protein l19 [Nannochloropsis gaditan... [more]
EJK58211.13.400e-736.61hypothetical protein THAOC_21683 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582933gene_3659Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03310.3NO08G03310.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G03310.2NO08G03310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G03310.1NO08G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03310.3NO08G03310.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G03310.2NO08G03310.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G03310.1NO08G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03310 ID=NO08G03310|Name=NO08G03310|organism=Nannochloropsis oceanica|type=gene|length=2157bp
GACCATAACAGCGTATTAATCTGTACTAGCATGTGATAAAAAAGTAAGTT
TATTGCGATCTGGAGAGGCAGCAAGGCAAAAAAGCAGCCAGGCAGGTATT
CGCCCTTGCCCGCTTTTTCTTTTATGCACTCTGGTCTATCGTCCCTTGTC
GACAAAGTGCTTTCGAGGGAGGCTCGGCTTCATAAAGAGGAAGCACCGTA
GTATCGTCGTAATGGTGCCGGTGGTGGACAAGGAGCTAGTCCGTGTGGTT
GCAGGTAGCAAGCAAGCGGAAGTGTCTGTGAGGAGTATTGAGGCTGAAGA
CGACGGAGTTCTTTCTCATCACTGGTGCGGCACGACGTCGAAGGTATCAT
CGCGGTCCTTGGTTTCAGTCAAAGCTATGGTCACTGTATAGAAAAACAAG
GATCAAGGCCCGAAGAACACTGCAGCGCAGTGAGAGCATGAGCTTGGTCA
GAGTGTGATATATGGATGTAGTTAACTGCCCATTCCCCTGTCTTTCATCC
TGCCTCTCCCACAAACCATCGCACGGCCAACTAAACTTACTATCCCCCCC
ACCCCCAAACACACAGCCATGGCAGCAGCAGCAAGAGCCGTGGGACATGC
CTGGACGCGGCTCGTGTCATCAACAATCATGGGCACGAGAAGTAGCGGCG
GTCTCTCCTCCTCCACTATGAGCAACACCCGTCCCATCTCCTCTGCCTCC
TCCCCCATGTCGGCCGCTACTTCCACTCCCACACCCACCGCAGCCATCGC
GGCCACCAGACCACCCAAACACAAGACGCCCCGTAAGCGgtaagttcccc
ttgcttgcgaagagtcggaccagcctttggaagggaggatgatttgcgcg
gacgttgtagtatagagcctcaagagcgtgcgacatgtcatcgcgaacat
gattgcagcgaagggggaaatcccaatacttatcaatctcaaaaccgaat
tccgggctctttatcaagaacaccaggaggaagtgagggaggacgtggcg
gatcggcctcaaggcactctctctctattgttatacatcagtcgagcgta
tggtatcgggagcgctttcagtatgcctctgcccgtctacgcttggcatg
ctccaaatctacccctctttcttccttatcgtccttgtcacaaatatctc
ctccctcccacttgcttcctccgcgtacccccaaactttacacagAGCCT
CCTCCATCCTCGCTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCA
GCCAACGCCGATAAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGA
GGTGAAGATGGTGACACATTTGACTTCCACGGAGACGGACACCTACAGAG
GGGTGGTGCTGAGCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTG
GCAGACgtgcgtatttagggaagggacgtgaaggaagtgggggggagaaa
gtgtgcataccgttgtttgtgtaagaagttgcctgtcctgattgcgtccc
taggcgcggcggctaacaggcttttgcccttactcccttcaactaaagtc
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacacacacacacacacacacacacacacacacacacgttaaa
taacctacgaattgacagGTGTTCCTGGGCACGCCCATTTTGAGCAGCAT
CCCACTCTACAGCCCGTTTATCAAGAGTCTTAAGGTTAGGTCGGGTTTTC
GTGCCGGGGTGTGGGTGTGGTGGGTGTGTATCTGAGGGAGAAAACACAGA
TTGAAAGCATCTTCCGGTACTCACCGTCAAACTCCCACTGCTCCCACGCA
CCCCACTCCACCTCTTTCACCCAAATCAAAACCTATACACTCAGGTGCTG
CAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCGACGGTCCAAGTT
ATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCTCGATCTCCACTT
AAGGACACAGAGGGGTGTGTGTGTCTGCGTGGGGGTGTGGGCAAGGAAGC
AAGGAGAGTGAAGTCTTCTTTCGGAAGTTTGGAATACTGTAAGATATGAA
TTACAGACGAGGAGGAAAGAAGAAAAAGGAATAACCACAAAATAGACGAG
GACAGGA
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protein sequence of NO08G03310.3

>NO08G03310.3-protein ID=NO08G03310.3-protein|Name=NO08G03310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MAAAARAVGHAWTRLVSSTIMGTRSSGGLSSSTMSNTRPISSASSPMSAA
TSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIP
TFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVRI*
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protein sequence of NO08G03310.2

>NO08G03310.2-protein ID=NO08G03310.2-protein|Name=NO08G03310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MAAAARAVGHAWTRLVSSTIMGTRSSGGLSSSTMSNTRPISSASSPMSAA
TSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIP
TFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTP
ILSSIPLYSPFIKSLKVRSGFRAGVWVWWVCI*
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protein sequence of NO08G03310.1

>NO08G03310.1-protein ID=NO08G03310.1-protein|Name=NO08G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MAAAARAVGHAWTRLVSSTIMGTRSSGGLSSSTMSNTRPISSASSPMSAA
TSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIP
TFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTP
ILSSIPLYSPFIKSLKVLQAAYIHKGKKRVRRSKLYYLWEKRDPKVFSIS
T*
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Synonyms
Publications