NO08G03300, NO08G03300 (gene) Nannochloropsis oceanica

Overview
NameNO08G03300
Unique NameNO08G03300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr8:910744..911820 +

Link to JBrowse

Properties
Property NameValue
DescriptionSiva
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:910744..911820 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022773Siva_cd27-bd
Homology
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BLAST of NO08G03300 vs. NCBI_GenBank
Match: EWM26835.1 (Siva [Nannochloropsis gaditana])

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25
Identity = 105/331 (31.72%), Postives = 130/331 (39.27%), Query Frame = 0 
Query:   43 GVNVGSKREALGVLQPSSLPSIPHGAAISEEGGGGDSMLPSSRPWKMARVQLSQPPSQYIGQVQEPLICVTTIGPPV--VGMEEE--------AMEKNYHNTTXXXXXXXXXXXQHSPPTLAGQSRRQTAAYGGVTNALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMMRTSRHPQEIAAMALWARG------------------------------PQRAMTMSXXXXXXXXXXXXXXXXXXHSDCWISIGRCRHCERGVCKTCLRDCEACRETFCSLCSTVDYGGAFEKVVCIDCG 334
            GV+VG KR+ LG L      S P  +  SE  G   +   S+RPWK   +   QP +QY       ++  T I  P+   GMEE+         +  N H+               +PPTLAGQSRRQTAAY                                                                     +R SRHPQE+AA+A WA G                               Q  M +S                   + CW S+ +CRHCERGVCKTCLR CEAC+E FCS+CSTVDYGGAFE+V+CIDCG
Sbjct:   53 GVSVGRKRQVLGAL------SSPAVSGHSEPEGNKHTEFVSARPWKQPCL---QPCTQY---TSNRIMSDTVIQEPLNPCGMEEDGGDDREECCIPSNLHHAASHV----------TPPTLAGQSRRQTAAY------RKDDVLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLASDSQRCDVCLPPPRPDDPQRCFNYSLRQSRHPQEMAAIAQWAGGLHPRLGQPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATST-----AGCWASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCG 350
The following BLAST results are available for this feature:
BLAST of NO08G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26835.11.100e-2531.72Siva [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008692NSK008692Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03300.1NO08G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582932gene_3658Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g14gene3740Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03300.1NO08G03300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03300 ID=NO08G03300|Name=NO08G03300|organism=Nannochloropsis oceanica|type=gene|length=1077bp
ATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGCCTC
AGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAGATC
CTCTGAAGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAACGG
GAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCACGG
TGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGTCCT
CCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCGCAA
TATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTGACTACCATTGGACC
GCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACAACA
CCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCACCC
CCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGGTGT
CACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTTCAA
AGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACTTTG
CAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAGCAG
CAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCATGA
TGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGGGCC
AGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATTGTTGGA
TTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAGACTTGC
CTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTGCTCGAC
AGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATTGTGGTA
AGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTACCAAGG
GGAGGGCAAGAAATGGATTTGTCTTAA
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protein sequence of NO08G03300.1

>NO08G03300.1-protein ID=NO08G03300.1-protein|Name=NO08G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MWPSSWWSRRDENNAASAASSSGAAAAGAMTADPLKSRSVGFGVNVGSKR
EALGVLQPSSLPSIPHGAAISEEGGGGDSMLPSSRPWKMARVQLSQPPSQ
YIGQVQEPLICVTTIGPPVVGMEEEAMEKNYHNTTRQQPQQPQGPAQHSP
PTLAGQSRRQTAAYGGVTNALLQLRSPSTAAASKAGTMRQQQQQLQQKTL
QKDCDICLLSSSSSQSSNGSQSSRDGSNQQHGMMRTSRHPQEIAAMALWA
RGPQRAMTMSQSPPHAQQQQQQQQQGSGHSDCWISIGRCRHCERGVCKTC
LRDCEACRETFCSLCSTVDYGGAFEKVVCIDCGKRLAITAAAAAAAAVPR
GGQEMDLS*
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Synonyms
Publications