NO08G03290, NO08G03290 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO08G03290 vs. NCBI_GenBank
Match: EWM26787.1 (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana]) HSP 1 Score: 1531.2 bits (3963), Expect = 0.000e+0 Identity = 745/1225 (60.82%), Postives = 904/1225 (73.80%), Query Frame = 0
Query: 13 RGTPSYLLVVMTLIGGLAVTQGAFWDNWIGN-GKKVNDEASPAAPSEVVKPSV------TSAPAGLDMKGVDVHSLINPAAVGHDITGGQCGVYTRGLDGAELTLCVESVVEYGTDIKQINGFLINSGTTALCDLLIQPVVPEGSTLVSFWPDWILESVSDIFLEPGQKTAIGLTLRPGPQTNPTELPRIDIRAFKDCSHSAFDQATGDVTFHLVSLQKIMPQTIEFLASGQEADRAMSQQPPILKGQDIL--IPQEGQCAIYTKPATGTDRAQATLCVDSVLRWGTDIVQVNGLLLNTGKAPLCTVRMAAEHDAQYLSLWPRWVLQGHHKDNFRPGDSIAVGLTSPARPDGSRPALALENFDICGHPSTADVVRDPTTGEIVRPSPLEVVIVSMDDLFGKVEAKTVAKXXXXXXXXXXXXXXXXPAAVEEERQVSDTSAGTKLDASGAVPEQMAIPVGVCGIYRKGEAELALCSDSLVTWGRDVQQLNGFMMNTGNTTVCDIRLKPVLPSATEAVYALWPDWASESSYEVYFNPKQMTAAGMTGPLTETTPYLEIVSFRDCKDPPIMAVANLSSFSTVAIENVQPPPPSEEITSMPVAVPIPDHEGAK-GDSRRRTQTNGNLRGVEKAVEVIPEGYCALHTTHKGVLALCVESILHWGSNLVQINTFLKNLSDEPEVDLCDIEVAASGGPQGVDSVWPKWVQEGIYAGPVRPAEVLPVGVVAPFNASNPGNDPAVAVVGFRACSEKKALPVE-----DVVILPIGFVRREEDGP-FRSVEPVIRAEKXXXXXXXXXXXXXXVPVEVGPGRCGQASGLAGFFKMKLCVDRANMWSNDIVQLAGRVENTGNEPICDLMVGHNFEKSSIASSWPTALATGEQSKALLPGDIHDFGFTASPRGLAENVLPMLSVISFRPCGSGGVAVPAPPQGLELMWEGPLTEKVTDLLSSRGVENEDLGEAPQTEAGRRRLAVK-KAAPTTMDTIDWDLCGYYTGLDGQSELALCWKDAKSWKDRDAGRVVQTNLILVNTGKLGVCNVTIEIENFDLELGDHYPTNWLDEDGDDMFPSFPGFFAPEQIVNFGAAVPVASGFPEVGIDAKFSACSPPPPKAVAPRNATCTPVSGTDAAAGVILNFCVYDTPKVWTEYGGPRVVMVEGYIENIGKETACNITVDIENFEENQAMWGEWMPTYPYKLSPRVTLKFGANIPFVKGIPKSTLTGFDKCDPL 1221
RGTPS LL + L QG W+ + N K + +E P+ P+EVV P++ AP+GLD+KGVD SLINP VG I GQCGVY RG +GAE++LCVESVVEYG D+KQ+N FL+NSGT LCD LI+P VP G+T+ SFWPDW LE +S++++EP Q AIG+T+ PGPQ +P LPRID+ AFKDCS S D DV F + + +MP+ + A+ A M ++P + Q +L +P+EGQCAIY+KPA+GT+ AQATLC++S+L G+D+VQVNGLLLNTG APLCTVR+AAE DAQY S+WPRW QGH KDNF PGD+IAVGLTSP R DGSRPALALENFD+CGHPSTADVVRDP+TG ++RPSPLEVV+VSMDD G E ++A +A E RQ DT+AGTK+DA GA PEQ+AIP GVCG+YRKG AEL++CS+S+VTWG+DVQQLNGFMMNTGN T+CDIR++P LPSA+E Y+LWPDWAS++SYEV+F+P QMTA GMTGP T TTPY+EIVSFRDCKD MA + LSSFSTV IE VQPP P EE+TS+PVAVPIP E AK G + G E++++ I EG+CALHT +ALC+ESI+HWG+ LVQ+NTFL NL++E D+CD+EVA S GP+G DS+WP+WV++G Y V P E LPVGV AP++ + P N P +A+ FRAC+EKK LPVE +V LPIG V+R ++GP VE + + PV V PGRCG A+G+AG F+++LCVDRAN W + IVQLAGRVEN+G E ICD+ +G NFEK SIA+SWP A GE +ALLPG+ + G TASPRGL E V PMLSV SFRPCG G+AVP+PPQ L+L WEGP E +L G ++DLGE Q E+ +R LA K KAAPTT DTIDW+LCGYYTGLDG+SELALCWKDAKSWKDR+ GR+VQTNL+LVNTGKLGVCNVT+EIEN D ELGDHYP NW+D+DG + FPS+PG++APEQIVN GAAVP+ASGFP+V I F+AC PPPPK VAPR A CT V G+ A A V+LNFC+Y PK+W EY GPR+VMVEGYIENIG+ TACNI VDIEN ++ QA WGEWMPTYPYKLSP TLKFGANIP+ KGIPKS L FD CD L
Sbjct: 5 RGTPSLLLSINLL--WCLNAQGIAWNRGLSNRNKDIIEEDLPSLPAEVVDPTIPILSPTPEAPSGLDLKGVDAQSLINPDFVGRLIPAGQCGVYRRGSNGAEVSLCVESVVEYGNDLKQLNAFLVNSGTAGLCDFLIRPFVPTGATMDSFWPDWALEDMSEVYIEPAQIIAIGMTVVPGPQDSPQSLPRIDVVAFKDCSPSGVDADQDDVNFEISPIDMMMPEAVVITAA---AGDPMQKRPATKQEQQVLATVPEEGQCAIYSKPASGTNTAQATLCIESILHGGSDVVQVNGLLLNTGTAPLCTVRLAAEQDAQYSSMWPRWASQGHSKDNFMPGDAIAVGLTSPGRADGSRPALALENFDVCGHPSTADVVRDPSTGAVLRPSPLEVVLVSMDDTLGAPEWVSLADYQEARGDEERQAIDTDTSATMETRQAEDTTAGTKIDAFGATPEQLAIPAGVCGVYRKGAAELSICSESVVTWGQDVQQLNGFMMNTGNRTICDIRIRPALPSASETPYSLWPDWASDASYEVFFDPGQMTAVGMTGPPTNTTPYIEIVSFRDCKDAAEMATSALSSFSTVPIETVQPPSPQEELTSIPVAVPIPSTEAAKEGFDDMLPEPVG-----EESMDTIREGWCALHTIRSSTMALCLESIIHWGTTLVQVNTFLMNLNEED--DVCDVEVAISTGPEGFDSLWPRWVRQGTYKKHVSPGEALPVGVAAPYDKAQPRNSPVIALRNFRACAEKKGLPVEAGDISPLVFLPIGMVKRVDEGPSLPRVEKEVNTAEGLARRMQEEDAELS-PVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICDMRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGRQGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLGEGVQAESEQRHLASKGKAAPTTFDTIDWELCGYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSCDSL 1216
BLAST of NO08G03290 vs. NCBI_GenBank
Match: EWM22920.1 (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana]) HSP 1 Score: 82.4 bits (202), Expect = 1.100e-11 Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 0
Query: 464 CGIYRKGEAELALCSDSLVTWGRDVQQLNGFMMNTGNTTVCDIRLKPVLPSATEAVYALWPDWASESSYEVYFNPKQMTAAGMTGP--LTETTPYLEIVSFRDCKDP 569
C Y+ G+A LC + L GF+ N G +CD++L P+ V A WPDWAS++SYE YFN KQMT+ G+T + P +EIVS R C DP
Sbjct: 102 CMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPL---NAPGVTAFWPDWASDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRAC-DP 204 The following BLAST results are available for this feature:
BLAST of NO08G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03290 ID=NO08G03290|Name=NO08G03290|organism=Nannochloropsis oceanica|type=gene|length=3663bpback to top protein sequence of NO08G03290.1 >NO08G03290.1-protein ID=NO08G03290.1-protein|Name=NO08G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1221bpback to top Synonyms
Publications
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