NO08G03240, NO08G03240 (gene) Nannochloropsis oceanica

Overview
NameNO08G03240
Unique NameNO08G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length418
Alignment locationchr8:890875..891292 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:890875..891292 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G03240 vs. NCBI_GenBank
Match: EWM26797.1 (hypothetical protein Naga_100018g6 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 2.100e-15
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0 
Query:   19 RRAFSTRLEPPQVTSTNLMAQHPHKTGLAGITVGYFVAMYLERTKYKDEFVRDERHKPVLALPDVSK 86
            R +FSTR  P  VT+T+ MAQHP+ T   G+T GYFVAMY ERTKYKDE+VRDERH+P + +P VSK
Sbjct:    3 RNSFSTR--PSPVTTTDAMAQHPYATMFGGMTFGYFVAMYFERTKYKDEYVRDERHRPGVGIPGVSK 67
The following BLAST results are available for this feature:
BLAST of NO08G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26797.12.100e-1564.18hypothetical protein Naga_100018g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03240.1NO08G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100018g6gene3748Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03240.1NO08G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03240 ID=NO08G03240|Name=NO08G03240|organism=Nannochloropsis oceanica|type=gene|length=418bp
ATGCACCCGCGCGTGTTCTTCCACAGATACCGCCCCACAACCACTGTCCT
GCGCCGCCGTGCCTTTTCCACCCGCCTTGAGCCGgtacgtgaattgcatg
tgcgggaaatggcagtaccatttgccttatcctaggccatttctgctgtt
caatgggcacttttttgtcgcgcatcaatcttctttcgttccgtgtgccc
tgctcatcatttttgcgatcctctcccccatcccttctccgtagCCCCAG
GTTACGTCGACGAACCTCATGGCCCAACATCCACACAAGACCGGGTTGGC
TGGTATTACCGTAGGCTACTTTGTGGCGATGTACCTGGAGCGGACCAAGT
ACAAAGACGAGTTTGTTCGTGACGAGCGCCACAAGCCAGTGTTGGCCTTG
CCGGACGTTTCCAAGTAG
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protein sequence of NO08G03240.1

>NO08G03240.1-protein ID=NO08G03240.1-protein|Name=NO08G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MHPRVFFHRYRPTTTVLRRRAFSTRLEPPQVTSTNLMAQHPHKTGLAGIT
VGYFVAMYLERTKYKDEFVRDERHKPVLALPDVSK*
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Synonyms
Publications