NO08G03170, NO08G03170 (gene) Nannochloropsis oceanica

Overview
NameNO08G03170
Unique NameNO08G03170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length410
Alignment locationchr8:872845..873254 +

Link to JBrowse

Properties
Property NameValue
DescriptionHyaluronan/mRNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:872845..873254 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006861HABP4_PAIRBP1-bd
Homology
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BLAST of NO08G03170 vs. NCBI_GenBank
Match: EWM26693.1 (Hyaluronan/mRNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:    1 MDNQAKEVHDPSDKKAHARPEASRGRQFERRSGTGREETQKKGGAGKANWGNELE 56
            MD Q KE+HDP DKKAH RP+ +RGRQFERRSGTGREETQKKGGAGKANWGNELE
Sbjct:    1 MDQQGKEIHDPHDKKAHTRPDVARGRQFERRSGTGREETQKKGGAGKANWGNELE 55
The following BLAST results are available for this feature:
BLAST of NO08G03170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26693.11.500e-1785.45Hyaluronan/mRNA-binding protein [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008712NSK008712Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03170.1NO08G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637916gene_3648Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g225gene3755Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03170.1NO08G03170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03170 ID=NO08G03170|Name=NO08G03170|organism=Nannochloropsis oceanica|type=gene|length=410bp
ATGGACAACCAAGCGAAGGAAGTCCACGATCCCTCCGATAAGAAGGCGCA
CGCACGCCCGGAGGCGTCGCGCGGTCGTCAGTTCGAGCGACGCTCAGGCA
CCGGCCGGGAAGAGACTCAAAAGAAGGGCGGTGCTGGCAAGGCCAACTGG
GGCAATGAGCTCGAGgtatgtcaggtacagggaaaggattgattgtatta
gcgatcatgcgtaaatattgctctgttcgtgaagatccagtgggtcttct
tctcgttgagagctccatgtgcctcagtacccctctcttcttcaaccaac
caatctctcattcttctcccacttcattcacccacactgtcgcgcgtaca
tggaagGACGTGGATGATATTGTCCGAGAGGTGCACGAGGAGCTAGCCGG
GCAGAAATAG
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protein sequence of NO08G03170.1

>NO08G03170.1-protein ID=NO08G03170.1-protein|Name=NO08G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MDNQAKEVHDPSDKKAHARPEASRGRQFERRSGTGREETQKKGGAGKANW
GNELEDVDDIVREVHEELAGQK*
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Synonyms
Publications