NO08G03140, NO08G03140 (gene) Nannochloropsis oceanica

Overview
NameNO08G03140
Unique NameNO08G03140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr8:864326..865381 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:864326..865381 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO08G03140 vs. NCBI_GenBank
Match: EWM26741.1 (hypothetical protein Naga_100001g220 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 3.300e-19
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0 
Query:    1 MAGPRPTKVLSLRELQMAKRMLKSNKVPACQRELTALLNAMDRKDKGDGNVNIRILQTALEHCLH 66
            M GPRPTKVL++RELQMAKRMLK  K  ACQREL ALL AM+RK+ G+ NVNIR+LQTALEHCLH
Sbjct:    1 MPGPRPTKVLTVRELQMAKRMLKPKKAAACQRELNALLTAMERKENGEANVNIRMLQTALEHCLH 65
The following BLAST results are available for this feature:
BLAST of NO08G03140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26741.13.300e-1976.92hypothetical protein Naga_100001g220 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008718NSK008718Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03140.1NO08G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582876gene_3644Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g220gene3759Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03140.1NO08G03140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03140 ID=NO08G03140|Name=NO08G03140|organism=Nannochloropsis oceanica|type=gene|length=1056bp
CAACAGGCACGTGCTAGGTCTCTGGGCGTCACACGCAGCCCTAACCCAAG
CTCCTAGCAAGCCCTCCATTCCCCGGTCCCCGGCCTATCATCATCGAGCG
CCGTCATTCCCTACGCATACTTCCATCTACATACACCAAACCCCAGGATT
AATAATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGC
AGATGGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGG
GAGCTCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGG
GAACGTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATG
CATCGgtaaatgtcttgaatgggattgttggaggttggtcgtggatgggg
ctggatcttgggtgggatatagtaaaggcatgtaaattggcgttggatct
cggtagttgtgtgcctgcgcgcctggtaccacgatcgagaataagaggcg
agaagggcggggtcaggactatttcaagatttgataggctatcgaatttt
ataatttgcatggccagaagggggtttatgagaagattgaaaacccctcc
tattctcgaagatgctgctttctttatccaagcgtacacatatcgcttgg
cagcactcaggatgcagaaatatgaaaagaataacccgcacactcattat
ctgaattccaactcttccccctttgactcattgaaatcaaaacagGACCA
GGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTGCCCGGG
CCACCAAGAAGAAGTAGATATTGAGGAACAGGATTGGGCAGCAACCGCGA
AGAAGAAATGGGGTTTGCAGGGGATGTGGAGAAGAGAGAAATGCAGGCCT
GCGTAGAAAATGTGGGTTTTCGAACCTCGACAACATGTACTCACATACCC
GCTCCTGTTAGCCGGAGATGAAAGAGCCCTTGAAGAGCCGACCTTCCCCC
AAATGATACGCCTTACCAAAATGTAAAAAAAGAAACAACAATAGAAAAAG
GTGTGA
back to top

protein sequence of NO08G03140.1

>NO08G03140.1-protein ID=NO08G03140.1-protein|Name=NO08G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAGPRPTKVLSLRELQMAKRMLKSNKVPACQRELTALLNAMDRKDKGDGN
VNIRILQTALEHCLHASDQAKKVAAPPVGLGVLARATKKK*
back to top
Synonyms
Publications