NO08G03090, NO08G03090 (gene) Nannochloropsis oceanica

Overview
NameNO08G03090
Unique NameNO08G03090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr8:854227..855789 -

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Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:854227..855789 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0008017microtubule binding
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR031852Vik1/Cik1_MT-bd
Homology
BLAST of NO08G03090 vs. NCBI_GenBank
Match: EWM26774.1 (di-glucose binding, kinesin motor domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 562.4 bits (1448), Expect = 1.500e-156
Identity = 356/530 (67.17%), Postives = 403/530 (76.04%), Query Frame = 0
Query:    1 MASQVWSTMRRRGGRFLENLNQTVEGASSEFLELGDSFLEGS-RGGLNDEIGPEEGYKAALIQFQLDQVKLTKEYQKVIGEKDAELGRVRALYTAETGKVLDGG------VEKNADASGEKEMMGSTMDFGTFVGGRGDPMAAFVGMSAEQLLAQVEVLLDSVTSWEARVAELVESKANYAAQAAQMRLQAERSELRLGDLVDRVKLQQTEMEKYILMAEEGRMRTLKDRETIEGLVKDYTTLVSESQAAEAEHTSMIDELENKRDELQVKVKAYERNIIQLIDTQAEIGLKQ---GEVKPSS----STTPSFSAVAPAVEQLQKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXDATTLLARAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHAMLRAQREEEERAEAALREEVTELQAKLEAAYKGSKAELALVQDKLVKMEGALIREVEKARAVASEEAMQRYQKVVEVANQEKAQALEMYAQESRKRKLIHNKLLELQGNIRVLCRVRPMLAMEMAGGEGG 517
            MASQ+WSTMR+RGG+FLENLN TVEG +SEF EL D FLEGS RG  N++IGPEEGYKAALIQFQLDQVKLTKEYQKVIGEK+AEL RVR LY  ETGK LDG       V  NAD S     + S +  GT  GGR +PMAAF  MSA+QL AQVEVLLDSVTSWE+RVAELVESKA+YAAQ A+MRLQ ERS+LR+GDLVDRVKLQQ+EMEKYILMAEEGR RT+KDRETIEGLV+DYT LV+ESQA E +  S I++LE KRDEL VK+KAYERNII LID+QAE GLK    G  K  S    S   S + +   V+ LQK+++                             T LL RA+ AE       XXXXXXXXXXXXXXXXXXX   D+A LRA+R+EEERAEAALREEVTELQAKLEA+YKG KAE+A +QD+LVKMEGA++REVE AR  A EEA Q YQ++VEVANQEK QALE+YAQE+RKRK +HNKLLELQGNIRVLCRVRPMLA+E A GEGG
Sbjct:    1 MASQMWSTMRKRGGKFLENLNHTVEGTASEFFELDDGFLEGSCRGEANNQIGPEEGYKAALIQFQLDQVKLTKEYQKVIGEKEAELRRVRELYKTETGKDLDGDDQGADPVVDNADTS-----VSSLIGVGTDSGGR-NPMAAFANMSADQLRAQVEVLLDSVTSWESRVAELVESKADYAAQVARMRLQVERSDLRMGDLVDRVKLQQSEMEKYILMAEEGRARTVKDRETIEGLVRDYTALVAESQAQERQQASAIEDLETKRDELVVKLKAYERNIIHLIDSQAEAGLKHQDGGAAKADSHAETSAVDSTATMTATVDALQKEIKAKEEKIKQLLASPAASAPHTAHPPD----TALLERAQVAEAEAERLRXXXXXXXXXXXXXXXXXXXVSSDYAALRARRDEEERAEAALREEVTELQAKLEASYKGGKAEIAALQDRLVKMEGAMVREVEGARVQAREEAKQTYQRLVEVANQEKEQALELYAQENRKRKAVHNKLLELQGNIRVLCRVRPMLAVEKASGEGG 520          
BLAST of NO08G03090 vs. NCBI_GenBank
Match: CBN74697.1 (kinesin motor protein-related [Ectocarpus siliculosus])

HSP 1 Score: 75.1 bits (183), Expect = 7.200e-10
Identity = 76/271 (28.04%), Postives = 118/271 (43.54%), Query Frame = 0
Query:   54 EGYKAALIQFQLDQVKLTKEYQKVIGEKDAELGRVRALYTAETGKVLDGGVEKNADASGEKEMMGSTMDFGTFVGGRGDPMAAFVGMS-AEQLLAQVEVLLDSVTSWEARVAELVESKANYAAQAAQMRLQAERSELRLGDLVDRVKLQQTEMEKYILMAEEGRMRTL----KDRETIEGLVKDYTTLVSESQAAEAEHTSMIDELENKRDELQVKVKAYERNIIQLIDTQAEIG-----LKQGEVKPSSSTTPSFSAVAPAVEQLQKKVE 315
            E YK  L+ FQ+DQ KL KE Q  + EK+ E    + LY   T     GG                                  +G+    +L A+++VL +    WE ++ E + +    A  AA+++L+ E S   L   V  +   +   E  IL     + R L    +  +TIE LV +Y+ L SE  A     +  I  LEN RDEL  K+KA+E NI+QL+    E G     + + +V       P+     P+ E+++K++E
Sbjct:   47 EIYKQMLVGFQMDQAKLGKETQAALREKEDEAKHWKKLYLKAT-----GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVDMLVKLEAELDVLRNVNLEWEEKLKEALRTSTEEA--AARLKLEHENSV--LSAKVKELDTARAASEDLILELSREKSRMLGSSGEASDTIESLVDEYSRLASEHTAQRQMDSETIQRLENVRDELVEKLKAHETNIMQLLQRAEEDGAVSQQMSERDVAGKPDEAPASGEAPPSAEEIEKRLE 308          
BLAST of NO08G03090 vs. NCBI_GenBank
Match: XP_002909243.1 (kinesin-like protein [Phytophthora infestans T30-4] >EEY58057.1 kinesin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 68.2 bits (165), Expect = 8.800e-8
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 0
Query:  390 AQREEEERAEAALREEVTELQAKL---EAAYKGSKAELALVQDKLVKME---GALIREVEKARAVASEEAMQRYQKVVEVANQEKAQALEMYAQESRKRKLIHNKLLELQGNIRVLCRVRPMLAMEM 511
            AQ  E E  + AL+ E   ++ +L   +   KG   E   ++ +L   E    ++ + ++K R  A  EA Q   ++V  AN+EKA+  E+Y QE   R+ +HN+L+ELQGNIRV CRVRP+  +EM
Sbjct:  352 AQISELEDQQRALKREFRAIERELKTQQGLAKGRGDESMALKQELESAEIKLASVAQTIQKERMEAYNEAQQASAEIVRQANEEKARVAELYTQEMLARRKLHNRLMELQGNIRVFCRVRPIQPVEM 478          
BLAST of NO08G03090 vs. NCBI_GenBank
Match: POM66575.1 (Kinesin-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 5.700e-7
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0
Query:  449 ASEEAMQRYQKVVEVANQEKAQALEMYAQESRKRKLIHNKLLELQGNIRVLCRVRPMLAMEM 511
            A  EA Q   ++V  AN+EKA+  E+Y QE   R+ +HNKL+ELQGNIRV CRVRP+  +E+
Sbjct:    3 AYTEAQQASAEIVRQANEEKARVAELYTQEMMARRKLHNKLMELQGNIRVFCRVRPIQPVEL 64          
The following BLAST results are available for this feature:
BLAST of NO08G03090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM26774.11.500e-15667.17di-glucose binding, kinesin motor domain containin... [more]
CBN74697.17.200e-1028.04kinesin motor protein-related [Ectocarpus siliculo... [more]
XP_002909243.18.800e-837.80kinesin-like protein [Phytophthora infestans T30-4... [more]
POM66575.15.700e-753.23Kinesin-like protein [Phytophthora palmivora var. ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03090.1NO08G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03090.1NO08G03090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03090 ID=NO08G03090|Name=NO08G03090|organism=Nannochloropsis oceanica|type=gene|length=1563bp
ATGGCCTCCCAGGTCTGGAGCACGATGCGGCGGCGAGGCGGGCGGTTCCT
GGAAAACCTGAACCAGACGGTGGAGGGCGCGTCGAGTGAATTCCTAGAGC
TGGGGGACAGCTTTCTCGAGGGGTCTAGGGGCGGGTTGAACGACGAAATT
GGACCCGAGGAAGGGTACAAGGCTGCCTTGATTCAGTTTCAGCTGGATCA
GGTGAAGCTGACAAAGGAGTACCAGAAGGTAATAGGGGAGAAGGATGCAG
AGCTAGGTCGTGTCCGCGCGTTATACACGGCTGAGACGGGCAAGGTCTTG
GATGGGGGCGTGGAGAAGAATGCGGATGCCAGTGGTGAGAAGGAGATGAT
GGGCTCTACCATGGATTTTGGGACGTTTGTTGGAGGAAGAGGCGACCCGA
TGGCAGCATTTGTGGGGATGAGCGCGGAGCAATTGCTAGCGCAGGTCGAG
GTATTGTTGGACAGTGTAACTTCGTGGGAGGCGAGGGTGGCGGAGCTGGT
GGAGAGTAAGGCGAACTACGCCGCTCAAGCGGCGCAGATGCGCTTACAGG
CTGAGCGATCGGAATTGAGGCTGGGGGATCTGGTAGACCGCGTGAAATTG
CAGCAGACGGAAATGGAGAAATATATTTTAATGGCGGAGGAGGGGAGGAT
GCGGACGCTCAAGGATAGAGAGACGATTGAGGGCTTGGTCAAGGATTACA
CGACTTTGGTATCTGAATCCCAGGCAGCAGAGGCCGAGCACACCTCGATG
ATTGACGAGTTGGAGAACAAGCGCGATGAGCTCCAAGTGAAAGTGAAGGC
CTACGAAAGGAACATCATTCAGCTGATCGACACCCAGGCCGAGATAGGGC
TGAAGCAGGGAGAAGTCAAGCCATCCTCCTCTACCACCCCTTCCTTTTCT
GCTGTTGCCCCTGCCGTCGAACAGCTTCAAAAGAAAGTGGAAGCTCAGGA
AGAAGAAATCAAGCGTCTTCTTCTTGCCTCGTCCGCACCTGCTGCCCCTC
CTACCCCCCAAAGTGGTGGCCCTGACGCTACGACCCTCTTAGCCCGTGCA
GAAGCCGCTGAGGCAGAAATTGAGAGACTGAAGAAGGAGTTGGAACGAAC
GAAGAAGACCCTCGAACAAGCGACAAAGGCAGGAGAGAAATTGGGGAAGG
ACCATGCCATGCTGAGGGCGCAACGCGAGGAGGAGGAGCGGGCCGAGGCT
GCTTTAAGAGAGGAAGTGACGGAATTACAAGCGAAGCTCGAGGCGGCTTA
TAAGGGGAGCAAGGCTGAATTGGCCTTGGTACAGGATAAGCTCGTCAAGA
TGGAGGGGGCGCTGATCAGGGAGGTAGAGAAGGCGCGGGCGGTCGCGAGC
GAGGAGGCGATGCAGCGTTATCAGAAAGTGGTCGAAGTGGCGAATCAGGA
GAAGGCCCAGGCGTTAGAAATGTACGCGCAGGAGAGTCGAAAGAGGAAAC
TGATTCACAATAAGCTGTTGGAATTGCAGGGAAATATTCGGGTATTGTGC
CGGGTAAGGCCGATGCTGGCGATGGAGATGGCAGGAGGGGAGGGAGGGGG
GGGAAGGACGTGA
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protein sequence of NO08G03090.1

>NO08G03090.1-protein ID=NO08G03090.1-protein|Name=NO08G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MASQVWSTMRRRGGRFLENLNQTVEGASSEFLELGDSFLEGSRGGLNDEI
GPEEGYKAALIQFQLDQVKLTKEYQKVIGEKDAELGRVRALYTAETGKVL
DGGVEKNADASGEKEMMGSTMDFGTFVGGRGDPMAAFVGMSAEQLLAQVE
VLLDSVTSWEARVAELVESKANYAAQAAQMRLQAERSELRLGDLVDRVKL
QQTEMEKYILMAEEGRMRTLKDRETIEGLVKDYTTLVSESQAAEAEHTSM
IDELENKRDELQVKVKAYERNIIQLIDTQAEIGLKQGEVKPSSSTTPSFS
AVAPAVEQLQKKVEAQEEEIKRLLLASSAPAAPPTPQSGGPDATTLLARA
EAAEAEIERLKKELERTKKTLEQATKAGEKLGKDHAMLRAQREEEERAEA
ALREEVTELQAKLEAAYKGSKAELALVQDKLVKMEGALIREVEKARAVAS
EEAMQRYQKVVEVANQEKAQALEMYAQESRKRKLIHNKLLELQGNIRVLC
RVRPMLAMEMAGGEGGGGRT*
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Synonyms
Publications