NO08G02970, NO08G02970 (gene) Nannochloropsis oceanica

Overview
NameNO08G02970
Unique NameNO08G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr8:827617..829431 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:827617..829431 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G02970 vs. NCBI_GenBank
Match: EWM26705.1 (hypothetical protein Naga_100001g205 [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 2.700e-44
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = 0 
Query:   42 GGFVFADTRTCWDLEVWIQGALFTQSSACPMDNYGAFVTASIAGKSVSTANADPFGSSVMWNEKLSLGCHIKNEPLVFRLYAGENAKSAPCAQWTMKDWLAEAALNDVPVGGPEENVLTNSVVFL-GRANLMVQLASFVHHDPPPQKGIISLDDFSFDGGESI 204
            G F+FA+TRTCWDL+VW++GA+ + SS CP     +FV+ SI G S+S+ +     S  +WN++LSLGCH+ N PL  +LY G N +  PC +W M DWLA+AALND+PVGGPEE+V +N++  L GRA LM++LAS++HHDPP ++G ++LDDF+   G+ I
Sbjct:   63 GDFIFAETRTCWDLDVWLKGAMISHSS-CPTSEGPSFVSVSIGGTSLSSRSLGAGISVPVWNQRLSLGCHLSNVPLKIQLYTGGNQR-VPCTEWVMPDWLAQAALNDMPVGGPEEDVQSNTIPLLGGRATLMIELASYIHHDPPAKRGPVALDDFTLSSGKVI 223
The following BLAST results are available for this feature:
BLAST of NO08G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26705.12.700e-4452.15hypothetical protein Naga_100001g205 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008732NSK008732Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02970.1NO08G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582824gene_3628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g205gene3772Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02970.1NO08G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02970 ID=NO08G02970|Name=NO08G02970|organism=Nannochloropsis oceanica|type=gene|length=1815bp
TGTAAACGGAAGTTCTTCTTCCATCCCATGACGCGCGTGCTTCTTTTCCC
ACGCATTTGCCTTGTTTGTGGAGCAACTCTCCCCTCGCCCACGCATAATG
ACATATCAGAGCTAATGTTTGATTTGGATGCGGTGGACAAGCCTGAATAA
CGCATGTTGGCTTGCTTCATCTTAGCTCCTCAGCGGCTGCGATGTGTCGA
CCCCCGGTCTTGCATCCACGCGGACTACACGAGCCTACGCGATTTATCAT
TCCATTGTTACCCTTTGGCTGCACAGGACGTGCACCTACCCATGCGCCCC
CCCTTAGCTTCCCGTCCCATCCACTCTGTGGAAAGCAGCGCGTACTTGCT
CTGGGCCTTGCATTTTCCTGTCTCTGGATGGCTTCACTCATACTCAAGGC
CTCCATTATCGAGCTCTTAATGTGGTCTGTCTTCTGTCTTACCCACTTAC
CCCATTCATCCCTTACCCACGACAAACAGGATGGGGGGAAGCAAAGGCCA
TCATCCGCATCCCCACCAAGACCGCGGGGAGATAGATGAAAATGACGACG
ATGACGTTCTTATCCTTGCCCCACCTGTGAGCAGCAGGGACGAAGGGGCA
GGTGGTGGCTTTGTTTTTGCCGATACTCGGACCTGTTGGGACCTCGAGGT
TTGGATACAGGGCGCCTTGTTCACGCAAAGCTCCGCCTGCCCTATGGACA
ATTACGGCGCATTTGTGACAGCCTCCATAGCCGGCAAGTCTGTGAGCACC
GCGAATGCTGATCCATTCGGCTCGTCTGTCATGTGGAACGAGAAGCTATC
TCTGGGCTGCCACATCAAAAATGAGCCTCTGGTTTTTCGATTGTATGCTG
GCGAGAATGCCAAGTCGGCGCCTTGTGCACAGTGGACAATGAAAGATTGG
CTTGCCGAAGCGGCACTAAATGATGTACCTGTCGGAGGTCCCGAAGAAAA
CGTGCTTACCAATTCCGTTGTTTTCCTTGGCCGTGCGAATCTGATGGTAC
AACTTGCCTCCTTCGTCCATCATGACCCGCCTCCCCAAAAAGGTATCATC
TCCTTAGACGACTTTTCATTTGATGGTGGCGAAAGCATCGGTGGTTTGAT
TGGTGGAGTGCTCCTCATCATGTTCATCGTTTTTGTCTCCCTGTGGTGCT
GTTGCATTTGCTGCTGTCCCCGGACATATCAAGAGCGCCGGCGTCGATTA
TGGGTGACCAGTGGAGCCTCAACAGCAGCAGTGGCAACTACTTCTCGCCC
TCCTCCTCCTCCTTCTCGCCCTCCTCCTCCCCCCCCCCTTCCTCCTTCTG
TATCTTGCCCACGTCCTACTCCACCACCCCCACCTTTTTCTTCACCTTGG
TATAGTCGTCCTCCCCCTTTCGCTACCAGCAGCAACAACAACAGCTGCAG
CAATAGCAGGAGCAATAACAACACCGGTGGTGGTGGTCTTTTCTCAACTT
TCTATGGACGCCCCCAGCCATATGTCCCTTCTGCTTCTGCTCCTTTTGCT
TATGTTCAATCACATCCACAGCAGCAACAGCAACGGCAGCCATCACAGGT
AGCTGTTGCCATGCCTGTGGCTGAAGCCATCGGTACCTCGAACCGAGAAG
GGGGAGGAAATGTGCCTTTAGCGGAGGCAAGGGTCATGACGAGCTTTAAT
GCTGGAGGCGGAGGAGGGAGGATGGGAGAAGGAGGAGGAGGGAGGCAGGA
CCGGGGACGGAAGTTTAGTGTTTAAATAAATGAAAAAGAAGGGAATGAAC
AAAGTATTTGCATTGAATTCACTGACAGGGCTCGAAATGAATATGCACGA
TTGGCTCTGTCTGGC
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protein sequence of NO08G02970.1

>NO08G02970.1-protein ID=NO08G02970.1-protein|Name=NO08G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MGGSKGHHPHPHQDRGEIDENDDDDVLILAPPVSSRDEGAGGGFVFADTR
TCWDLEVWIQGALFTQSSACPMDNYGAFVTASIAGKSVSTANADPFGSSV
MWNEKLSLGCHIKNEPLVFRLYAGENAKSAPCAQWTMKDWLAEAALNDVP
VGGPEENVLTNSVVFLGRANLMVQLASFVHHDPPPQKGIISLDDFSFDGG
ESIGGLIGGVLLIMFIVFVSLWCCCICCCPRTYQERRRRLWVTSGASTAA
VATTSRPPPPPSRPPPPPPLPPSVSCPRPTPPPPPFSSPWYSRPPPFATS
SNNNSCSNSRSNNNTGGGGLFSTFYGRPQPYVPSASAPFAYVQSHPQQQQ
QRQPSQVAVAMPVAEAIGTSNREGGGNVPLAEARVMTSFNAGGGGGRMGE
GGGGRQDRGRKFSV*
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Synonyms
Publications