NO08G02950, NO08G02950 (gene) Nannochloropsis oceanica

Overview
NameNO08G02950
Unique NameNO08G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3258
Alignment locationchr8:822199..825456 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:822199..825456 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045892negative regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR006942TH1
IPR001202WW_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO08G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008733NSK008733Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02950.1NO08G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|368491gene_3627Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02950.1NO08G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02950 ID=NO08G02950|Name=NO08G02950|organism=Nannochloropsis oceanica|type=gene|length=3258bp
AAGATCGCTAACCATGGTGCTGGCTCTCGCATTAGCGCGGTACCAAGCCT
TGGTAACTTACTTTATCTTCCGTCGCAGGCTCCTACTCTTTTCCCGATTT
CCTTACTTCTTCTCCTCTCGCAACGCTTCTCTCTCGAACGCTGTCATTAT
TCCCCGGATGCCATCGATCGTCTTCTATTTGTGTTTCTTGCTCTTCTTGC
TCTTCTTGCCATCACCCTGCCCGCTTTTCCTCTTTCAACTCCCTAATTGC
GCCGGGCCTCCACTCTTGCTTCGGCACTCTTGAATGCAGTTGACAGGCCG
TGCACGGCGTACGAGCGAGTAGCCGACGGAGTCTCCTTCATTTTCACCAC
CTTGGGCCCTTCTATCAAGATCAATCACCCCTCCTCCGCGTTTGCCAGAA
GCCGCAGCCTTCCCAGCAGCAACAGTAGCAGCAGTATCTGTAGCACCCGC
AGTGCCTGCAGAAGTCACCATACCGACATGATAGGCATGTTCAACGTTGG
TCGCGGGTCTTATGATTACGATAGTGCCTGTGGCAAGCAGGTTGATTCGC
GGAAGCAAAACTGTAGTGGGACACATTTTGGGACTGCCGATGGCCCCTCG
CCGCCAAAATTGCCCACTTTATCCAGAAGGGCAAAAAAAGGACGTAGAGC
ATGGTCATGAAACCTTGAGTGAAAACGACAAATTACGAGGGAGTAAGTGA
CTAAGAATGTGGACGTGCGCTCGGTAGGAAACAAGGATATGGAGGAAGCG
AGATGCGTGCCAGTTCCACCATAAAGCACCGAAAACAAGATCTCAGCTAA
ATCGATTCAAATATACATGCTGACTATATTTCATTGCAACCTACGATTTG
ATTAAACTCCCAATGCCGCCATTTCTTGCTCAATGGGCACTAGAAGCGTG
GCTACTTCATCTCAGGTCACAACTCCCTCTTTCTACCCCTTACACACACG
CACCGCCCCCCCAAAAAACCGAGCCCGCAGTCGAAGGCGATCGCTGCAAC
CGATAAATATATGTATCTGCCACGGACTCGCACTGATTTGCAGCGCCCCC
GAGACCTCGACATTCCTCTCTGGCTTGGTGAAGCGCTGTGGTATCTCGGT
GGAAATTGCCCACATGTTGATCCTTAACTGGCTACCGTTGTCCAGGAAAG
GGTTCCGGGGGCGGAACAACGCGGTGCATCTGTGCACAGAAAAATCAATC
AAGGCAAGGCATGGACGCAACATATTGTTCCGTTGGTTCTAAGCAACCAT
AAGGACTCCGGCCTCCCCCTCAGCCAACCTCCCGCCTCCCCACCCACCCA
TAAACGACGACGAACAACGCCATCTTGGCGAGGCCCCACAACACCACTCT
TTCATCAGCCACCCCTCTCCCTTGGACAAAGCTCTACCAGACAACGCCAT
GCGACCACCCATAACATGCATATGCGACAGGAAAATGTGTGCTTGCTACA
ACGATTCGTGCCTTTCAGCTATGAAGACTCACTCCTCACAATCACACACG
CACCAGGCCAGCAGCCTCCTCTCTTTCCTGTGCCTGCCTGCCCTCCCTAC
CTCAACTCCACACTGCACGAGTGACATACACGCCATGGAGGACGAGGGAG
AAGTTGAGCCCCTCTTACGGGTCGGGGACTGGGAGATCTACTCGACCGAT
GATGGGAACGCCAAACCCTACTTCTACAACGCAGCTACGGAAGCGACGCA
ATGGGATATCCCCACCGAGCTCGCTGGTAACGAGCAGGTTATGTCAATGA
TGGTTTCGGAAGAAGGCGATGGAGATGACGAAGGGGAAGTGGCAAGACAG
GAGATGGAGGAGATCGGTGCCTTGTCTCAGCGTATGTCGGAGGATGGGGG
ACAGAGTACGGTTTCCACGCCCAACCACCTCACCGCGCCGTCGTCATACG
GGAAAAGGATGTTGGGGGAAGGTAAGGCGATGGAAGAGGAGACGCAAGAT
GTGCAGGATGAGAAGTTCGAGGCTGACGATGAGGAGGAAGGGGAGTGGGG
GGAGGCAAAGGACGAGGAAACGGGCCAAGTGTACTTCTTCAATCGACGTG
ACGGTAGCACTACGTGGGATAAGCCTGGGGGGTTTGAATCCAAGCTGCTG
GTCGAGGAGATCGTGGGAGTGGGTGAAGGCATGGAGTTTGAGAAAGAGGA
GGGAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGGCGAGGTGGCTGAGTTAGAAGAGGGAGAAGTG
GAGGAGGGGGAACTCGAGGAGGAGGAGCGCAGGATGGGGCATTCGGACGC
CCAGATGTGGGACCAGCAGGCTAAGGAGCGGTGGACACAGGGCGAGGGCG
AGGAGGAGGCAGGAGGGATAGGAGAAGAAGCATCAGGAGTAGGAGGAGCA
GCGGACGCTGGATTGGACGGGCCTCCTGCTGCAGGAACTGCTGATGGTGT
GGAGGACGGGACGTTTTCTGCGGGTATGACCACGAAAGAGTATGAGGAAT
TAATGTATAAGCAGAAGGTGCAGGAACTCCGAGAGCGCCAGCTCTTCCAA
CAGCGGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAATCTGCGTCGTCATACGAAGACA
AAGCAGCGGCCGAAACGGCTGCAGCAGTGATTGCTGCTGGTACTGCTGCA
CACGAAAAGGCGACGTCCGCCGGAGTCCAAGGAACAGCAATGCGAGCCCA
GCGAATAAAGGAAGAAACGCGCCTCGCAGGGCAACAAGACGGAGCAGCAC
CCCCCCCCTCCGCCGTTCCCTCCCTTTCAACCACGTCTTCAAGATCCAAG
CGGAAAACATACAATGCTGACACCATGGACATCTCCCCTTCGGCTTCCCT
CCATCCTTCTCTCCCCTCCCCCGCCAAGGTGGAGGCAGACCGAAAACGGG
CAGCAGCAGCCGTGGCATTGGCAAAAGCAAAAGCCTTGCTGTGTGCGGAG
GACTCGATCATGGACCCAGGAATTGTGAATGCGGTCCGGACGTATATCAA
GGAGCAAGGCGCGAAGAAGGGAGGGAAAAAAGTCGATGAGGAGGAGGAGG
AGGAGGAGGAGCTGATGAATGTGGATGAGATGCTCGCACAGAACTACCGG
GGCAAGGCTAACATGGCTGTGTTGTTAAGTGGGTGGTTGGAAGAGCTGGG
GGGGATGGAACGGAGGGGGGTGATGTGGAGGGGAGGGAGTTGGTGCTCGA
GCATCTGA
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protein sequence of NO08G02950.1

>NO08G02950.1-protein ID=NO08G02950.1-protein|Name=NO08G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp
MRPPITCICDRKMCACYNDSCLSAMKTHSSQSHTHQASSLLSFLCLPALP
TSTPHCTSDIHAMEDEGEVEPLLRVGDWEIYSTDDGNAKPYFYNAATEAT
QWDIPTELAGNEQVMSMMVSEEGDGDDEGEVARQEMEEIGALSQRMSEDG
GQSTVSTPNHLTAPSSYGKRMLGEGKAMEEETQDVQDEKFEADDEEEGEW
GEAKDEETGQVYFFNRRDGSTTWDKPGGFESKLLVEEIVGVGEGMEFEKE
EGEEEEEEEEEEEEEEEEEEEEEGEVAELEEGEVEEGELEEEERRMGHSD
AQMWDQQAKERWTQGEGEEEAGGIGEEASGVGGAADAGLDGPPAAGTADG
VEDGTFSAGMTTKEYEELMYKQKVQELRERQLFQQRQQQQQQQQQQQQQQ
QQQQQQQQQQSASSYEDKAAAETAAAVIAAGTAAHEKATSAGVQGTAMRA
QRIKEETRLAGQQDGAAPPPSAVPSLSTTSSRSKRKTYNADTMDISPSAS
LHPSLPSPAKVEADRKRAAAAVALAKAKALLCAEDSIMDPGIVNAVRTYI
KEQGAKKGGKKVDEEEEEEEELMNVDEMLAQNYRGKANMAVLLSGWLEEL
GGMERRGVMWRGGSWCSSI*
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Synonyms
Publications