NO08G02840, NO08G02840 (gene) Nannochloropsis oceanica

Overview
NameNO08G02840
Unique NameNO08G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3593
Alignment locationchr8:797686..801278 +

Link to JBrowse

Properties
Property NameValue
DescriptionAminomethyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:797686..801278 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029043GcvT/YgfZ_C
IPR013977GCV_T_C
IPR006222GCV_T_N
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
BLAST of NO08G02840 vs. NCBI_GenBank
Match: EWM26666.1 (glycine decarboxylase t-protein [Nannochloropsis gaditana])

HSP 1 Score: 687.6 bits (1773), Expect = 2.400e-194
Identity = 334/379 (88.13%), Postives = 356/379 (93.93%), Query Frame = 0
Query:   35 ALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRAKASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHEQQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLKARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYKA 414
            ALEKTAL+D+HL  KGKMVPFAGYELPVLYE+PEWGGIVKEHLHCRAKASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTN +GGIIDDTIITNAGD+TYMIVNGATK GDM HF E+M++F GDVCFEYFHEQQLLALQGPSAA  LQALLP+D+DL KVNFMTGFDTTVGGL+ARVTRCGYTGEDGFEVSV WKDA ALA+LFL+ P +RL+GLGARDSLRLESGLCLYGNDIDAT TPVEAALGWTMGGPKGRRRKEQGFLGAEKFL+PEGKFLPI+RKRVGL GFKAPARAHTEIFD SG +KIGEVTSGTFSPSL KPIAMGYVA E + EG+KVAVKVRGKLQ A++TKMPFVTQHYYKA
Sbjct:   41 ALEKTALFDMHLEMKGKMVPFAGYELPVLYEMPEWGGIVKEHLHCRAKASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNKDGGIIDDTIITNAGDYTYMIVNGATKGGDMAHFKEQMESFKGDVCFEYFHEQQLLALQGPSAAETLQALLPADVDLSKVNFMTGFDTTVGGLQARVTRCGYTGEDGFEVSVAWKDARALAELFLEGPGIRLAGLGARDSLRLESGLCLYGNDIDATITPVEAALGWTMGGPKGRRRKEQGFLGAEKFLSPEGKFLPISRKRVGLAGFKAPARAHTEIFDPSGVNKIGEVTSGTFSPSLNKPIAMGYVAKEFSAEGSKVAVKVRGKLQGADVTKMPFVTQHYYKA 419          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: AAR21108.1 (mitochondrial glycine decarboxylase T-protein [Conticribra weissflogii])

HSP 1 Score: 503.8 bits (1296), Expect = 5.000e-139
Identity = 253/402 (62.94%), Postives = 306/402 (76.12%), Query Frame = 0
Query:   15 SSRQKLASSANAQHRAFGTEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCR--AKASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            +SR+  A++A +       E L KTALYDLH    G MVPFAGYELPVLY+  E GG++KEHL CR   KAS+FDVSHMGQI+WHGKDR  F+E LVVGD+A L  G   LSL+TN +GGIIDDT+ITNAGD+ YM+VNGATK GDMKHF E+++ F GDV  EY  E  QL A+QGP AA  ++ LLP   DL  + FMTG DTT+ G++  R+TRCGYTGEDGFE+++  + A ++A   +  P V  +GLGARDSLRLE+GLCLYGNDIDA TTP EAALGWTMGGPK RRR E GF+GAE  L P+GKF  I+RKRVG++G KAPAR HTEI+D SG +KIGEVTSGTFSP L KPIAMGYV  + +K GT+V +K+RGK+Q+AE+TKMPFV   YY+
Sbjct:   17 TSRRAFAAAATSD------EPLVKTALYDLHKELGGDMVPFAGYELPVLYK-GENGGVMKEHLWCREDGKASLFDVSHMGQIRWHGKDRTAFIEKLVVGDIASLPAGSGCLSLITNAQGGIIDDTVITNAGDYIYMVVNGATKFGDMKHFKEQLEQFDGDVSMEYLEESMQLFAVQGPGAAEAVKKLLPDGFDLTSMAFMTGTDTTLDGIEGCRITRCGYTGEDGFEIAMPAEHAVSIASKLISDPTVNPTGLGARDSLRLEAGLCLYGNDIDANTTPTEAALGWTMGGPKSRRRLEGGFIGAENILKPDGKFKAISRKRVGIMGMKAPARDHTEIYDASGENKIGEVTSGTFSPCLKKPIAMGYVEKDASKAGTEVLLKIRGKMQKAEVTKMPFVESRYYR 411          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: CBJ48669.1 (Aminomethyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 499.6 bits (1285), Expect = 9.400e-138
Identity = 252/406 (62.07%), Postives = 298/406 (73.40%), Query Frame = 0
Query:   10 ARLAGSSRQKLASSANAQHRAFGTEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHEQQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            AR         A   +AQ   F +  LEKTA + +H+  KGKMVPFAGYELPVLYE  E GG++ E LHCRA  KASVFDVSHMGQI+W GKD   F+E  VVGD+ GL  GE RL+L+TN  GGI+DDT++TNAGD+ YM+VNGA K GDM HF E+M +F GDV  +Y   QQLLALQG  A A LQ+L+P  +D+ K+ FMTG DTTV G++  RVTRCGYTGEDG+EVSV +  A ALA+ FL    V ++GLGARD+LRLE+GLCLYGNDIDATT PVE +L WTMGGPKGRRR EQGFLGAE FLTPEGK    +RKRVG+ G +APAR  TEIFD  G +KIG +TSGTFSP L KP+AMGYV T HAK GT V +K+R K+    +T MPF+   YYK
Sbjct:   14 ARACNGGSGSQALKQHAQRATFASGPLEKTAYHQMHVDMKGKMVPFAGYELPVLYE-GEGGGVMNETLHCRAPGKASVFDVSHMGQIRWTGKDAADFIERCVVGDIKGLKAGEGRLTLITNANGGIVDDTVVTNAGDYIYMVVNGACKHGDMAHFKEQMADFKGDVHMDYMETQQLLALQGKGAPAALQSLMPDGVDVTKMLFMTGVDTTVAGIEGCRVTRCGYTGEDGYEVSVPYDSAVALAESFLGISGVEVAGLGARDALRLEAGLCLYGNDIDATTNPVEGSLAWTMGGPKGRRRLEQGFLGAEHFLTPEGKLKKQSRKRVGIFGMRAPARDGTEIFDAEGKTKIGTITSGTFSPCLKKPVAMGYVETAHAKNGTDVMLKIRNKMVPTAVTAMPFLETSYYK 418          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: XP_002292225.1 (glycine decarboxylase t-protein [Thalassiosira pseudonana CCMP1335] >EED90200.1 glycine decarboxylase t-protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 491.9 bits (1265), Expect = 2.000e-135
Identity = 250/405 (61.73%), Postives = 302/405 (74.57%), Query Frame = 0
Query:   12 LAGSSRQKLASSANAQHRAFGTEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            L  +S + LASS N        E L KT+LY+LH    G MVPFAGYELPVLY+  + GG++KEHL CR+  KAS+FDVSHMGQI+W G+DR  FLE +VVGD+AGL  G   LSL+TN+ GGIIDDT+ITNAGD+ YM+VNGATK GDMKHF E+M++F GDV  EY  +  QLLA+QGP AA  +  LLP   DL K+ FMTG DTT+ G+   R+TRCGYTGEDGFE+++  + A ++A   L  P V  +GLGARDSLRLE+GLCLYG+D+D  T P+EA LGWTMGGPK RRR E GFLGAE  L P+GKF  + RKRVG+ G KAPAR H EIFD +G +KIGEVTSGTFSP L  PIAMGYV TE AK GT+V V++RGK+Q+AEI +MPFV   YY+
Sbjct:   19 LPSTSSRSLASSTN-------EEPLVKTSLYNLHKELGGDMVPFAGYELPVLYK-GDNGGVMKEHLWCRSDGKASLFDVSHMGQIRWRGRDRAAFLEKIVVGDIAGLSEGSGCLSLVTNVNGGIIDDTVITNAGDYIYMVVNGATKFGDMKHFKEQMESFDGDVNMEYLEDSMQLLAIQGPGAAEAVSKLLPGAFDLTKMAFMTGVDTTLDGVDGCRITRCGYTGEDGFEIAMPAEHAVSIASKLLSDPSVNPTGLGARDSLRLEAGLCLYGHDLDENTNPIEATLGWTMGGPKSRRRTEGGFLGAEHILKPDGKFQKVARKRVGIKGMKAPAREHAEIFDANGETKIGEVTSGTFSPCLKAPIAMGYVETELAKAGTEVNVQIRGKMQKAEIVRMPFVESRYYR 415          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: GAX25370.1 (aminomethyltransferase [Fistulifera solaris])

HSP 1 Score: 482.3 bits (1240), Expect = 1.600e-132
Identity = 248/396 (62.63%), Postives = 297/396 (75.00%), Query Frame = 0
Query:   21 ASSANAQHRAFGTEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            A     +H A  T  L KTAL  LH    G MVPFAGYELPVLY   +  G++KEHL CR+  KAS+FDVSHMGQI+WHGKDRV FLE +VVGD+AGL  G   LSL+TN +GGIIDDT+ITNAGD+ YM+VNGATK GDMKHF ++MK FGGDV  EY  +  QLLA+QGP AAA +  LLPS +DL K++FMTG DTT+ G+   RVTRCGYTGEDGFE+++    A ++A   L+   V+ +GLGARDSLRLE+GLCLYG+D+D T  PVE  L WTMGGPK RRR E+GFLGAE  LTPEGK   + +KRVG++G KAPAR HTEI+  SG +KIG VTSGTFSP L KPIAMGYV TE AK GT++ +K+R K+Q A +TKMPFV   Y+K
Sbjct:   14 AYQRKGRHLATSTN-LVKTALNGLHKELGGDMVPFAGYELPVLY---KGEGVMKEHLWCRSEGKASLFDVSHMGQIRWHGKDRVAFLERIVVGDIAGLAPGSGCLSLVTNEKGGIIDDTVITNAGDYIYMVVNGATKFGDMKHFEKQMKEFGGDVTMEYLEDSMQLLAVQGPGAAAAVSNLLPSTVDLSKMSFMTGLDTTLDGVHGCRVTRCGYTGEDGFEIAMPADYAVSIAQKLLEDATVKPTGLGARDSLRLEAGLCLYGHDLDETINPVEGGLAWTMGGPKSRRRLEKGFLGAEHILTPEGKLKDVAQKRVGIIGMKAPAREHTEIY--SGDTKIGHVTSGTFSPCLKKPIAMGYVTTEFAKVGTEIQLKIRDKMQNAVVTKMPFVETKYFK 403          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: GAX17081.1 (aminomethyltransferase [Fistulifera solaris])

HSP 1 Score: 481.9 bits (1239), Expect = 2.000e-132
Identity = 247/403 (61.29%), Postives = 302/403 (74.94%), Query Frame = 0
Query:   19 KLASSANAQHRAFG-----TEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            K A + NA ++  G     +  L KTAL +LH    G MVPFAGYELPVLY   +  G++KEHL CR+  KAS+FDVSHMGQI+WHGKDRV FLE +VVGD+AGL  G   LSL+TN +GGIIDDT+ITNAGD+ YM+VNGATK GDM+HF ++MK FGGDV  EY  +  QLLA+QGP AAA +  +LPS +DL K+ FMTG DTT+ G+   R+TRCGYTGEDGFE+++  + A ++A   L+   V+ +GLGARDSLRLE+GLCLYG+D+D T  PVE  L WTMGGPK RRR E+GFLGAE  LTPEGK   +++KRVG+VG KAPAR HTEI+  SG  KIG VTSGTFSP L KPIAMGYV TE AK GT++ +K+R K+Q A +TKMPFV   Y+K
Sbjct:    6 KSAKAINAAYQRKGRHLATSTNLVKTALNELHKELGGDMVPFAGYELPVLY---KGDGVMKEHLWCRSEGKASLFDVSHMGQIRWHGKDRVAFLERIVVGDIAGLASGSGCLSLVTNEKGGIIDDTVITNAGDYIYMVVNGATKFGDMEHFQQQMKEFGGDVTMEYLEDSMQLLAIQGPGAAAAVSKVLPSTVDLSKMPFMTGLDTTLDGVSGCRITRCGYTGEDGFEIAMPAEYAVSIAQRLLEDATVKPTGLGARDSLRLEAGLCLYGHDLDETINPVEGGLAWTMGGPKSRRRLEKGFLGAEHILTPEGKLKDVSQKRVGIVGMKAPAREHTEIY--SGDKKIGHVTSGTFSPCLKKPIAMGYVTTEFAKVGTEIQLKIRDKMQNAVVTKMPFVETKYFK 403          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: XP_002176340.1 (glycine decarboxylase t-protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC42576.1 glycine decarboxylase t-protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 474.6 bits (1220), Expect = 3.200e-130
Identity = 242/390 (62.05%), Postives = 294/390 (75.38%), Query Frame = 0
Query:   29 RAFGTEA--LEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            R+F  E+  L KTALY++H    G MVPFAGYELPVLY+  E GG++KEHL CRA  KAS+FDVSHMGQI+WHGKDRV FLE +VVGD+A L  G   LSL+TN +GGIIDDT+ITNAGD  +M+VNGATK GDMKHF E+M  F GDV  EY  +  QLLA+QGP AAA +  LLPSD D+ ++ FM+G  TT+ G+   R+TRCGYTGEDGFE+++  + A ++A   ++   V  +GLGARDSLRLE+GLCLYGND++   TPVE  LGWT+G  K RRR E GFLGAE  LTP+GK   + RKRVG++G KAPAR HTEIFD +G +KIGEVTSGTFSP L  PIAMGYV T  AK GT + +K+R K+Q+AEITKMPFV   YY+
Sbjct:   30 RSFAAESENLVKTALYNVHKDLGGDMVPFAGYELPVLYK-GENGGVMKEHLWCRADGKASLFDVSHMGQIRWHGKDRVAFLERVVVGDIASLKEGMGCLSLVTNEKGGIIDDTVITNAGDHVFMVVNGATKFGDMKHFEEQMAVFDGDVTMEYLEDSMQLLAVQGPGAAASVAKLLPSDFDMTRMPFMSGRPTTLDGVDGCRITRCGYTGEDGFEIAMPTEHAVSIASKLMEDSSVNPTGLGARDSLRLEAGLCLYGNDLNEDITPVEGVLGWTLGPAKSRRRTEGGFLGAEHILTPDGKLQKVNRKRVGIMGMKAPARDHTEIFDENGENKIGEVTSGTFSPCLKAPIAMGYVETASAKAGTPIMLKIRNKMQKAEITKMPFVESRYYR 418          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: EJK66549.1 (hypothetical protein THAOC_12525 [Thalassiosira oceanica])

HSP 1 Score: 468.4 bits (1204), Expect = 2.300e-128
Identity = 234/383 (61.10%), Postives = 287/383 (74.93%), Query Frame = 0
Query:   34 EALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFHE-QQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            E L KTAL  LH    G MVPFAGYELPVLY+  + GG++KEHL CRA  K S+FDVSHMGQ+KWHGKDR  FLE +VVGD+ GL  G   LSL+TN  GGIIDDT+ITNAGD+ YM+VNGATK GDMKHF E++  F GDV  EY  +  QLLA+QGP AAA +  LLP   DL+++ FMTG +TT+ G+   R+TRCGYTGEDGFE+++  ++A ++A   L+   V  +GLGARDSLRLE+GLCLYG+D++ T  PVEA L WTMGGPKGRRR E GFLG E  L P+GK   + +KRVG++G KAPAR   EI+DV+G +KIG VTSGTFSP L +PIAMGYV T  +K GT++ +KVRGK+Q A +TKMPFV   YY+
Sbjct:   35 EPLVKTALNTLHKQLGGDMVPFAGYELPVLYK-GDNGGVMKEHLWCRADGKCSLFDVSHMGQLKWHGKDRATFLEKIVVGDIGGLKDGAGCLSLVTNASGGIIDDTVITNAGDYVYMVVNGATKFGDMKHFQEQLDQFDGDVTMEYLEDSMQLLAIQGPGAAAAVSKLLPDAFDLERMAFMTGTNTTLDGIDGCRITRCGYTGEDGFEIAMPAENAESIAAKLLEDETVNPTGLGARDSLRLEAGLCLYGHDLNETINPVEATLAWTMGGPKGRRRTEGGFLGVEHILKPDGKLQKVAKKRVGIMGMKAPAREGAEIYDVTGETKIGVVTSGTFSPCLKRPIAMGYVDTGLSKAGTEIRIKVRGKMQNAAVTKMPFVESRYYR 416          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: OEU06768.1 (glycine decarboxylase T-protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 421.0 bits (1081), Expect = 4.300e-114
Identity = 213/386 (55.18%), Postives = 272/386 (70.47%), Query Frame = 0
Query:   36 LEKTALYDLHLAHKGKMVPFAGYELPVLY--EVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEYFH-EQQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLK-ARVTRCGYTGEDGFEVSVGWKDAT-ALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTM--GGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            L KT+L + H    G+MVPFAGYELPVLY  +  + GG++KEHL CR+  KAS+FDVSHMGQI+WHGKDR KF+E +VVGD+ GL      LSL+TN +GGI DDT+I NAGD+ +M+VNG+ K  DM HF + + ++ GDV  EY   + QLLALQG  +A VL  LLP   +LK + FMTG DTT+ G++  R+TRCGYTGEDGFE+S     +T  +A      P V  +GLGARDSLRLE+GLCLYGND++ T  P+   L WT+  GGP  RRR+EQ F GA  FL  +GK     RKR+G++G KAPAR +TEI+DV G   IGE+TSGTFSP L KPIAMGY+ T  +K  T + +K+R K+ +A +TKMPFV  +YY+
Sbjct:   41 LMKTSLNEWHKELGGEMVPFAGYELPVLYKGDNVKNGGVMKEHLWCRSEGKASLFDVSHMGQIRWHGKDRAKFVEKMVVGDIQGLDTNHGCLSLITNDQGGIKDDTVIVNAGDYIHMVVNGSMKFSDMAHFQKHLDDYDGDVTMEYLEDDMQLLALQGSGSADVLSKLLPEGFNLKTMAFMTGLDTTIDGIENCRITRCGYTGEDGFEISTPSGISTIQIASKLCSDPNVNPTGLGARDSLRLEAGLCLYGNDLNETINPIMGTLAWTLGKGGPNARRRQEQDFTGASTFLKEDGKLKKQARKRIGIIGMKAPARQYTEIYDVDGIQLIGEITSGTFSPCLKKPIAMGYIDTIMSKNDTPIKLKIRNKMVDAHVTKMPFVESNYYR 426          
BLAST of NO08G02840 vs. NCBI_GenBank
Match: XP_009033333.1 (hypothetical protein AURANDRAFT_20469 [Aureococcus anophagefferens] >EGB12266.1 hypothetical protein AURANDRAFT_20469 [Aureococcus anophagefferens])

HSP 1 Score: 410.6 bits (1054), Expect = 5.800e-111
Identity = 221/407 (54.30%), Postives = 267/407 (65.60%), Query Frame = 0
Query:   21 ASSANAQHRAFGTEALEKTALYDLHLAHKGKMVPFAGYELPVLYEVPEWGGIVKEHLHCRA--KASVFDVSHMGQIKWHGKDRVKFLE-----------TLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIVNGATKTGDMKHFNERMKNFGGDVCFEY-FHEQQLLALQGPSAAAVLQALLPSDLDLKKVNFMTGFDTTVGGLKARVTRCGYTGEDGFEVSVG-WKDATALADLFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGPKGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVSGGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEITKMPFVTQHYYK 413
            AS      RAF ++AL KT LYDLHL   GKMVPFAGYELPV Y      G++KEH+HCR+  K+S+FDVSHMGQIKW G DR KFLE           T VVGDVAGLG GE RL+LLTN EGGI+DD ++ NAGD+ YM+VNGA K GDM H    +   G DV   Y   +  L+ALQG  A  VL  LLP   D+ +  FMTG DT+VGG   RVTRCGYTGEDGFE++V    +  A+A+L L S      GLGARDSLRLE+GLCLYG+D+D +  P+E  L WT+G    RRR +QG LG E +L   G      RKRVG +G   PAR  T IFD +G +++G VTSGT SP LGKPIAMG+V T  AK+GT V   +RGK   +++  MPFV  +YY+
Sbjct:    8 ASQRALGRRAFSSDALLKTMLYDLHLERGGKMVPFAGYELPVQY---AGIGVLKEHMHCRSPGKSSLFDVSHMGQIKWTGADRAKFLERVRPRPASRAATAVVGDVAGLGDGEGRLTLLTNAEGGILDDCVLANAGDYVYMVVNGACKVGDMAHLQALLDASGMDVQMHYQGDDATLVALQGAGAPGVLLPLLPDGFDMTRFAFMTGVDTSVGGYACRVTRCGYTGEDGFEIAVADPANGVAVAELLLGSEGCEPCGLGARDSLRLEAGLCLYGHDLDTSVNPIEGTLLWTIGPKGSRRRVDQGTLGMEHYLNANGSPKKFARKRVGFMGHAKPAREGTAIFDAAGETQVGVVTSGTVSPVLGKPIAMGFVETALAKKGTDVTFDIRGKKIPSQVAPMPFVEPNYYR 411          
The following BLAST results are available for this feature:
BLAST of NO08G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26666.12.400e-19488.13glycine decarboxylase t-protein [Nannochloropsis g... [more]
AAR21108.15.000e-13962.94mitochondrial glycine decarboxylase T-protein [Con... [more]
CBJ48669.19.400e-13862.07Aminomethyltransferase [Ectocarpus siliculosus][more]
XP_002292225.12.000e-13561.73glycine decarboxylase t-protein [Thalassiosira pse... [more]
GAX25370.11.600e-13262.63aminomethyltransferase [Fistulifera solaris][more]
GAX17081.12.000e-13261.29aminomethyltransferase [Fistulifera solaris][more]
XP_002176340.13.200e-13062.05glycine decarboxylase t-protein [Phaeodactylum tri... [more]
EJK66549.12.300e-12861.10hypothetical protein THAOC_12525 [Thalassiosira oc... [more]
OEU06768.14.300e-11455.18glycine decarboxylase T-protein [Fragilariopsis cy... [more]
XP_009033333.15.800e-11154.30hypothetical protein AURANDRAFT_20469 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL108nonsL108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR140ngnoR140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008736NSK008736Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02840.1NO08G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582793gene_3616Nannochloropsis oceanica (N. oceanica CCMP1779)gene
GDCTgene3776Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02840.1NO08G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02840 ID=NO08G02840|Name=NO08G02840|organism=Nannochloropsis oceanica|type=gene|length=3593bp
ACGTTTATCAAACTTCATTCCATAACACTTGCTTCTACAACCATTTCTGC
CTTGATATTTCTAATTATACATAGCAAACATGCCACCTAGCATTTGACCA
CTCTCCCACTGCCCTCCACGGTTCCCGCCCTCCCGGCCTCAACCCAGAAC
CTACTCTCCCATCCTCTTCCACTTTGTAAAGTCCATCCCCTCACTGATCG
CCAAGCCAATGCACCCAAGCGCTGCACCCTCCGAAGTACTCTCAGCAAAG
CCCACATAATACATATAAAAACATCCATCTCTCACACTTACACTCGGACA
ACCCAACGCCTGAGCATCCCACCTCCCTGTCCCTTTCCCAGCCCCGACAA
AGACAGGCTTGCCATCTGGGTGCATGTCTTCCCAATGCATACCATCATCC
GAACCATACACAGCAATACAATTACTGTTCTGCGTATTCGCACACTCCGC
AAACATCAGTAATTTCTTTCTCCTAACCGGGTCAGAAATAACACAGCGGG
TGGCATGTCCCAAATCGCGTAGCGTGCCGGGAGGCCCTCGGGGTAATTGA
AGAGGGCCACGCTTAGTCCATTTCTCACCCTTGGAGTCGGCGGACGTGGC
AAGCCCGATTTCAAATCCGAAGGTTGCTGTATTAAAGGTATGATAAAACA
TACCGAGCTTTGCACCCGGTAGGACACTGTCTTTCTCCAGATCCACGACT
TGAGGCCAACCGACGAAGAGGGCATCGAACTCACCAGGCGCGCCTTTATC
AAGGAGCACACCGGGGGTCCGTGTCCAGCTCACACCGTCGGAGCTTTCGG
CCTTACCGATTTTCATGTAGATCCCTCGGGCTTGTCCGTAGGGAGTAGGG
CCATACTCGCCGTCGCCACCGAAGTAGTACATGACCCATTTCTTCAACTG
CGCGTCCCATTGGACGTCTCCGATGCCTACGTGCAGAGAATCGAAGCTAT
TGCTGCTGCTAGGACCAAATACAGCTCCATCTAACAGGAGACCTTTGACC
CGCGCGAAATCACGCAAGCCATCCTTGGATTTCGCCAAGCCAATGTGTCC
CGAGGGGAGGTTGATCAGGTCGGCGGTTTGGTTGAAGGCTTTCGATCGGC
CATAGTACCACATATTCCAGGTACCGGCCGGCGCTTGCCGCACAATGGGA
CCCGACACCTTGTAGTCATCCCATGCTCCAGCTGTGCCGGGTCCCAGAAT
CTTGCCCACGTTCAGTCCACCGCCAAAGGGGAAGGCGTTGATCTGGCGGT
GTTGGAGGAGAGGGATAAGGAGGAGAGGGAGGAGGAGAAGCGAGGGTGGG
CTTTGCATGCCGGCGCCACGAAATTTCTGATGCGGGTAGTGGACGATGAA
ATGGCCGTGCTGCCGGCGTGGCGGTGGCGTTAGTCGAAATGAAGCTTGGA
ATGGGGAACGGAAGGACTTGCGAAGAATTAGACGAAGCGGTGTGGGCGAT
AGACAGCTTGCTGCGTTCTAGTGTCGGAATGGCGGGGGAAATGAGCGCTA
TCGGATCATAAATGTCCCTTGAAGGCAATAATTAGGAGGTCGATACTGAT
GGTGACCAGGACGTAGAGCTAGACGTTCGGGGCAGAGGAGATTTGGACTT
GAAGCAAACAACAGCGATCCATCATCAGTGCACTTGCCAAAGTCGAATCC
GGAGGCCCCTTTTCACACGCACTGATACTTCTTCCACGACGTCCACCACC
ACAATTACAACCCAGACTAGCCATGCTTGCATTTGCACGCACTGGTCTGG
CTCGTTTAGCGGGTTCCAGTCGACAAAAGCTAGCCTCTTCTGCCAACGCT
CAGCATCGTGCCTTCGGAACCGAGgtaagtcatgtggggggaaggaatag
aagaaaggggatgagcttgatgatggcggcggtatgattgtgtggacttc
gtatgtatgtggtgcggtataggatgaagcacgcgaggggaagcgcaagt
ggcggaggggaagcctatgaagaaggcctgcctttgcagctgcacccccg
agcacaagtaggaagtcaacaaggatttagcagggtgccacatgagggaa
ggaaagcatgattgcgagctctcacgtagtgtttgtaggccaacatgcag
tcgggcgtgtaaaatcaaccaggtcggcgggggcgcaaagacgggaacga
aggaagttgtgctcgtctcctgtcctgatactccactctctgactacacg
ctcccacactgacggcttcccgtctcctcccctttctcatagGCTTTAGA
GAAGACGGCCCTTTACGACCTGCACCTGGCACACAAGGGCAAGATGGTCC
CGTTCGCTGGGTACGAGCTCCCAGTCCTCTACGAGGTGCCAGAATGGGGA
GGGATTGTGAAAGAGCACCTGCATTGCCGTGCCAAAGCGTCGGTTTTTGA
TGTCTCGCACATGGGCCAGATCAAATGGCATGGGAAAGATAGGGTTAAGT
TTTTGGAGACGTTGGTGGTGGGCGATGTGGCGGGATTGGGCGTTGGGGAG
GCGAGATTAAGTTTGTTGACCAACATGGAAGGGGGGATCATTGATGATAC
GATCATTACGAATGCTGGGGACTTCACTTATATGATTGTTAATGGCGCAA
CCAAGACAGGTGATATGAAGCATTTTAACGAGAGGATGAAGAATTTTGGA
GGGGATGTGTGTTTTGAGTATTTCCATGAGCAACAGCTCCTGGCGCTACA
AGGCCCATCGGCGGCTGCTGTCTTGCAAGCCCTCCTCCCCTCGGACCTGG
ATTTGAAAAAGGTGAATTTTATGACGGGCTTCGATACCACTGTGGGAGGG
CTGAAGGCGAGGGTGACAAGGTGTGGATATACGGGGGAAGATGGGTTCGA
GGTGTCGGTGGGGTGGAAGGATGCCACGGCGTTGGCGGACTTGTTTTTGA
AGAGCCCGGAGGTGAGGTTGTCGGGTTTGGGGGCACGAGATTCCCTGCGG
CTGGAATCGGGCTTGTGTTTGTATGGGAATGATATTGACGCCACCACCAC
CCCGGTGGAGGCGGCGTTGGGCTGGACGATGGGTGGCCCGAAGGGGAGGC
GTAGGAAGGAGCAGGGGTTTTTAGGGGCGGAGAAGTTTCTGACTCCTGAG
GGGAAGTTTTTGCCAATCACGAGAAAGAGGGTGGGGTTGGTGGGGTTTAA
AGCACCTGCCAGGGCACATACAGAGATTTTTGATGTGTCGGGAGGGTCGA
AGATTGGGGAGGTGACAAGTGGGACGTTTAGCCCGTCGTTGGGGAAGCCG
ATTGCGATGGGTTATGTGGCCACGGAACATGCGAAAGAAGGGACCAAGGT
GGCGGTAAAGGTGAGGGGGAAATTGCAGGAGGCGGAGATTACCAAAATGC
CGTTTGTGACGCAGCATTATTACAAGGCCACCTGAAAAGAGGTGAAAGAC
TGGTAGGAGGAAAGGGAGGGGAGGTTGGACGGGGGGCGGGAGGAGGTGAA
ACAGTTGTGCGACATGGTGTTCATGAGTAGCGCGTGATGGTGCATAGTGT
GTGAGTGTAAGGGATGGCCACGTCAGTACCGAATCCGTATAGAACTTTGG
AAAGAAACCCCCAAAATAAAGCTGGAGTCAAGCTCGATCCGTC
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protein sequence of NO08G02840.1

>NO08G02840.1-protein ID=NO08G02840.1-protein|Name=NO08G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MLAFARTGLARLAGSSRQKLASSANAQHRAFGTEALEKTALYDLHLAHKG
KMVPFAGYELPVLYEVPEWGGIVKEHLHCRAKASVFDVSHMGQIKWHGKD
RVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIV
NGATKTGDMKHFNERMKNFGGDVCFEYFHEQQLLALQGPSAAAVLQALLP
SDLDLKKVNFMTGFDTTVGGLKARVTRCGYTGEDGFEVSVGWKDATALAD
LFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGP
KGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVS
GGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEI
TKMPFVTQHYYKAT*
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Synonyms
Publications