NO08G02750, NO08G02750 (gene) Nannochloropsis oceanica

Overview
NameNO08G02750
Unique NameNO08G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr8:777070..778464 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein arginine serine-rich 45
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:777070..778464 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_005856075.1 (RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526] >EKU20285.1 RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33
Identity = 90/134 (67.16%), Postives = 97/134 (72.39%), Query Frame = 0 
Query:  109 AKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVEREMGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYDRNGGGP 243
            AKLHVSGL+RNVT+ HL EIF+TFG LSRVELV+DRRVGLSRGFAYVE++HRKDAEEAQLYMDGGQLDG  LKVNF+LLGGR GG GG   E G K              XXXXX          LYDRNGG P
Sbjct:  102 AKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFS-ETGPK-GGIRRSRSPNRRSXXXXXVSRGGGRERDLYDRNGGPP 233
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: EWM26701.1 (protein arginine serine-rich 45 [Nannochloropsis gaditana])

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33
Identity = 90/134 (67.16%), Postives = 97/134 (72.39%), Query Frame = 0 
Query:  109 AKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVEREMGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYDRNGGGP 243
            AKLHVSGL+RNVT+ HL EIF+TFG LSRVELV+DRRVGLSRGFAYVE++HRKDAEEAQLYMDGGQLDG  LKVNF+LLGGR GG GG   E G K              XXXXX          LYDRNGG P
Sbjct:  101 AKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFS-ETGPK-GGIRRSRSPNRRSXXXXXVSRGGGRERDLYDRNGGPP 232
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_020679609.1 (serine/arginine-rich splicing factor SR45 [Dendrobium catenatum] >PKU82001.1 Arginine/serine-rich protein 45 [Dendrobium catenatum])

HSP 1 Score: 102.4 bits (254), Expect = 3.800e-18
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LHV  LSRNV +AHL+EIFS FG L  VEL +DR V L RG+ Y+EF+ R DAE+A+LYMDGGQ+DG V+ V F L
Sbjct:  102 LHVDHLSRNVNEAHLKEIFSNFGELVNVELSMDRNVNLPRGYGYIEFKKRTDAEKARLYMDGGQIDGNVVSVKFTL 177
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_008786501.1 (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X1 [Phoenix dactylifera] >XP_008786502.1 PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 102.1 bits (253), Expect = 4.900e-18
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH++ LSRNV++AHL+EIFS FG +  VEL +DR V L RG+ YVEF  R DAE+A LYMDGGQ+DG V++V F L
Sbjct:  100 LHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_008786503.1 (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 102.1 bits (253), Expect = 4.900e-18
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH++ LSRNV++AHL+EIFS FG +  VEL +DR V L RG+ YVEF  R DAE+A LYMDGGQ+DG V++V F L
Sbjct:  100 LHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_008786504.1 (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X3 [Phoenix dactylifera])

HSP 1 Score: 102.1 bits (253), Expect = 4.900e-18
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH++ LSRNV++AHL+EIFS FG +  VEL +DR V L RG+ YVEF  R DAE+A LYMDGGQ+DG V++V F L
Sbjct:  100 LHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_005648329.1 (hypothetical protein COCSUDRAFT_66096 [Coccomyxa subellipsoidea C-169] >EIE23785.1 hypothetical protein COCSUDRAFT_66096 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 102.1 bits (253), Expect = 4.900e-18
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:  110 KLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILL 188
            +LHV  L+RNVT+ H++EIFSTFG +  VEL VD+ V L RGFAYVE++ R +AE+A+++MDGGQLDG VL V F+L+
Sbjct:  129 RLHVGHLTRNVTEDHIKEIFSTFGAIKSVELSVDKVVNLPRGFAYVEYKDRDEAEKARVHMDGGQLDGNVLSVQFVLV 206
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_006416799.1 (serine/arginine-rich splicing factor SR45 [Eutrema salsugineum] >ESQ35152.1 hypothetical protein EUTSA_v10007778mg [Eutrema salsugineum])

HSP 1 Score: 101.7 bits (252), Expect = 6.400e-18
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH+  LSRNV + HL+EIF  FG +  VEL +DR V L +GFAYVEF+ R DAE+AQL+MDGGQ+DG V+K  F L
Sbjct:  103 LHIDSLSRNVNEGHLKEIFGNFGEVIHVELAIDRAVNLPKGFAYVEFKARADAEKAQLFMDGGQIDGNVVKAKFTL 178
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_021906423.1 (serine/arginine-rich splicing factor SR45 isoform X2 [Carica papaya])

HSP 1 Score: 101.3 bits (251), Expect = 8.400e-18
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH+  LSRNV + HL+EIFS FG +  VEL +DR V L RG+AYVEF+ R DAE+AQ+YMDGGQ+DG V++  F L
Sbjct:  123 LHIDSLSRNVNEGHLKEIFSNFGEVVHVELAMDRAVNLPRGYAYVEFKTRVDAEKAQVYMDGGQIDGNVVRAKFTL 198
[Close]
BLAST of NO08G02750 vs. NCBI_GenBank
Match: XP_021906422.1 (serine/arginine-rich splicing factor SR45 isoform X1 [Carica papaya])

HSP 1 Score: 101.3 bits (251), Expect = 8.400e-18
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:  111 LHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFIL 187
            LH+  LSRNV + HL+EIFS FG +  VEL +DR V L RG+AYVEF+ R DAE+AQ+YMDGGQ+DG V++  F L
Sbjct:  123 LHIDSLSRNVNEGHLKEIFSNFGEVVHVELAMDRAVNLPRGYAYVEFKTRVDAEKAQVYMDGGQIDGNVVRAKFTL 198
The following BLAST results are available for this feature:
BLAST of NO08G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856075.11.100e-3367.16RNA-binding protein with serine-rich domain 1, par... [more]
EWM26701.11.100e-3367.16protein arginine serine-rich 45 [Nannochloropsis g... [more]
XP_020679609.13.800e-1863.16serine/arginine-rich splicing factor SR45 [Dendrob... [more]
XP_008786501.14.900e-1861.84PREDICTED: serine/arginine-rich splicing factor SR... [more]
XP_008786503.14.900e-1861.84PREDICTED: serine/arginine-rich splicing factor SR... [more]
XP_008786504.14.900e-1861.84PREDICTED: serine/arginine-rich splicing factor SR... [more]
XP_005648329.14.900e-1860.26hypothetical protein COCSUDRAFT_66096 [Coccomyxa s... [more]
XP_006416799.16.400e-1860.53serine/arginine-rich splicing factor SR45 [Eutrema... [more]
XP_021906423.18.400e-1860.53serine/arginine-rich splicing factor SR45 isoform ... [more]
XP_021906422.18.400e-1860.53serine/arginine-rich splicing factor SR45 isoform ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02750.1NO08G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|367601gene_3605Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g183gene3791Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02750.1NO08G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02750 ID=NO08G02750|Name=NO08G02750|organism=Nannochloropsis oceanica|type=gene|length=1395bp
ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC
TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG
GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG
CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC
CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC
AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG
GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG
CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA
ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA
GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA
GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT
TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG
ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG
GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT
TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG
GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG
AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG
ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA
GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC
CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG
GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC
CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG
GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC
GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA
GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA
GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG
CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA
AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA
back to top

protein sequence of NO08G02750.1

>NO08G02750.1-protein ID=NO08G02750.1-protein|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKK
RQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASAS
EDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSR
GFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVERE
MGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYDRNGGGPAGGAGGRE
GWRGRSRSPPRGGGRGGGGGGGIETAVAPAHRRDALVLEVESVEGRVVAG
AVNLLIVVSRTSEDGLPRVGGREEEEGLEVVVLGPHPPVGAVFLLLALAP
LPDVGGLGADHGRTRPRRRAGAVVPPPPPPLLRRRPRRAVEEDGVGARAV
AAEAPRLHIVGALRADKRKSSSHGGSSPSYIGGARRARISGQGRGTWSWG
RRTERERARGSECA*
back to top
Synonyms
Publications