NO08G02740, NO08G02740 (gene) Nannochloropsis oceanica

Overview
NameNO08G02740
Unique NameNO08G02740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2556
Alignment locationchr8:774246..776801 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:774246..776801 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025451DUF4211
Homology
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BLAST of NO08G02740 vs. NCBI_GenBank
Match: EWM26620.1 (protein of unknown function DUF4211 [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 8.300e-92
Identity = 198/304 (65.13%), Postives = 228/304 (75.00%), Query Frame = 0 
Query:  365 LMHMRVHAAFLAEQGEVLPLFMQRKAMSTRDAFLLYLEMLARSVADPAFREGMRRNPMSERYGRFSNAKKKLEDLICTKRESLLGSMQWKLLWVEELRGRPRFEFFDILGERPDRCQVCGRRRHPCAFEVRLSGPRYDSMALWESRRWEEALPCRLEVFGTPEGDEEVREXXXXXXXXXXXXXXXXXXXXKP--MEGKVGGWWHAGSTCKYKSLCYSSMIHYKYYLLRRVARRLKGFAVTGARSRRVKRRERELLQSPVKARKSRKTGLYEVVVSVEELMEEEGWVEAEFERFEKLLSLVENLM 667
            L+HMR +A    E+ E +PLFM R+ MS R+AF LY+EMLARS+ADP FR GMRR+P  + YGRFSNAKK LED +CT+RESLLGSMQW+ LWVEELR RPRF++ + +GERPDRC +CGRRRHPCAF+V LSGPRYDS  LWESR WE ALPC +E  GTPE       XXXXXXXXXXXXXXXXXXXX     EG+  GWW AGSTC+YKSLCYS M HYKY LLRR+ARRLKGFA  GARSRR +R        P   R +   G + VV+ V ELM+E GWVEAEFER + LL LVE +M
Sbjct:  357 LIHMRAYAKMALEEEERMPLFMTRRKMSLREAFALYVEMLARSLADPGFRSGMRRHPTGQVYGRFSNAKKFLEDQLCTRRESLLGSMQWRPLWVEELRSRPRFQWLEAIGERPDRCMICGRRRHPCAFQVLLSGPRYDSRVLWESRNWESALPCSVEALGTPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVREGRSNGWWDAGSTCQYKSLCYSRMTHYKYCLLRRIARRLKGFATGGARSRRGQRAREGGPGGPRPRRNA--AGSWAVVLPVAELMQEAGWVEAEFERMKTLLDLVEGMM 658
The following BLAST results are available for this feature:
BLAST of NO08G02740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26620.18.300e-9265.13protein of unknown function DUF4211 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02740.1NO08G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|367458gene_3604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02740.1NO08G02740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02740 ID=NO08G02740|Name=NO08G02740|organism=Nannochloropsis oceanica|type=gene|length=2556bp
ATGCCCGCCGCCCGCTATGGACACAATGATGATGATGATGAGGAGGAGGA
GGAGGAGGAAGAGGAGGAGGAGGTGAGGGTGATACGGTCCAAGCATCGCA
AGAGCAGCCTCAGCGTAGATGCAGCAGCAGCAGCAGCAGCAGCAGGAGGA
GGAGGAGGAGGAAGAGGAGAAGGAGGAGGCAAGAGTGATGATGTTGGTCA
GATAATTGAAGTGGATGACAGCGACGGGGAGGATACCAACAGCGGCGGCG
GCGGAGGAGGAATAGACACAGCCAGAGCAGCAGGAGCAGCAGGGCCAATA
ATCGAGGATCGGCCTAAGAGGAGGTCGTCTTTCCCTCCTCTATCACCACC
ACCACCAGCAGGAACACGTTGGCGCAGTCGTCGAAAGGTGGTGCTCGAGG
AGGGAAGAAAGGAGAGGGAGAAGGAGGAGGAACGTGAGAAGCTGGAGCAG
GACAGTGGGCTGTTTGATCAAGAGAGCGAGGAGGAAGAGAAGGAAGGGAC
ATGGAGGAGGCTGTCGGGTCTTTCTGGTAGGCCTGTCCGACGCTTATCTG
CTCTGTCCGCGAGTAGTAGGAGGAGATCCTCCTCTTTCTTTTTGACCAGG
CAGGGGAAGATGTCGGAGGATGAGGAAAGTGCGGATCTGGATGATTTTAT
TGTACCTGACGATGAGGTCGAAGAGGAGGAGGAGGACTATGACGATGCGA
GTAAGAAGACAAAGAGTAGAAAGACAATTGGGAGGAGGGGGGGGGGGGGA
GGGACAGCTGGACGCGAGGATGATTTTGTTGCGGCTGAAGATGAGGTGGA
GTTTATGGACTCCGAAGAGGAGGAAGAGTTGGTCTCGAGAAGAAAGAAGG
AAAGAAAGGAGCGAAGAAGGGGTTTGATTATGCGTGAGAAGGAAGGGGAA
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAGGAGGGTGGGGC
AGCCTCATCGGGAACGAAGCGACGTAAAATTATTCTAGCCAGCGATGACG
ATGATCATGATGATAATTCTAGCACTAACAGCAGCAGCAGCAGCAGCAGC
AGTGTCAGCAGCGAAGAAGAGGAGTCGAGTGAGGACGAGGGTTTGATGCA
CATGCGTGTTCATGCTGCCTTTTTAGCGGAGCAAGGCGAGGTGCTGCCAT
TGTTCATGCAGCGTAAGGCCATGAGTACCCGGGACGCTTTTCTTCTTTAC
CTGGAAATGCTTGCGCGCTCTGTGGCTGATCCCGCCTTTCGCGAAGGGAT
GAGAAGGAACCCCATGAGTGAGCGTTACGGCCGTTTCAGCAACGCCAAGA
AGAAGCTAGAGGATCTGATTTGCACCAAGCGCGAGTCGTTGCTTGGGTCC
ATGCAGTGGAAGTTGCTTTGGGTGGAGGAACTGAGGGGGAGGCCCCGGTT
TGAGTTTTTCGATATCTTGGGAGAGAGACCGGATAGGTGCCAGGTGTGTG
GGAGGAGGAGGCATCCGTGTGCGTTTGAAGTGAGGCTGTCCGGGCCGAGG
TATGATAGCATGGCTTTGTGGGAGAGCAGGCGGTGGGAAGAGGCATTGCC
CTGTCGCTTGGAGGTCTTTGGGACGCCGGAGGGGGATGAGGAGGTGAGAG
AGGCGGAGGAAGAGGAGGGGAAAGGGGAGGGGGAGGAGGAGGAAGAGGAG
GAGGAAGAAGGGAAGCCGATGGAGGGGAAGGTGGGGGGTTGGTGGCATGC
CGGATCGACGTGCAAGTACAAGAGCTTGTGTTATTCATCGATGATTCATT
ACAAGTATTATTTATTGCGGCGTGTGGCCAGGAGGTTGAAGGGGTTTGCG
GTGACAGGGGCGAGGTCAAGGAGGGTGAAGAGGCGGGAGAGGGAGTTGCT
GCAGAGCCCGGTGAAGGCCAGGAAAAGTCGAAAGACGGGCTTGTATGAGG
TGGTGGTGTCGGTGGAGGAGTTGATGGAGGAGGAGGGGTGGGTGGAGGCG
GAGTTTGAAAGGTTTGAGAAGTTGTTGAGTCTGGTGGAGAATCTCATGAT
GGATGGGGGGGCGGCGACGAGCACCGTGACGACGGCAAGGCAGTTGGCTG
GGTTGTGGGAGGAGGATGATGAGAAGGGAGGAGGAGGGGGGAGAGGACGG
GGAGAGGGGGGAGGAGGGCGCGGGGGAAGGAGATATGGAAGTGCGCGGGG
GGTTGAGGAGTGGAGCGAGGAGGAAGAGGGCGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGGTTTCGTGCGCCAGCTGTGGAGGGGCGGAGGGGATACAAT
CCGTTGGTGTAGATATAGGAAATGTGCGTTATGCAGCTCTAGGAAGCTTG
TTGCAGCGATAGTTGTAGGAATAGCAGCAGCAGGAACAACAGAAGAGAGA
GGTGGGAGAGAGGGACATACAGGGAAGGTTCAGGGGTGAGAAGAGAGGGA
TGAGAGGTAACGAACAAGACATGAGGAAATCTACCATGTACACCATCATC
ATTATCATCATCATCATCATCATTTTCAGCAGCAGCAGCAATAGCAGCAG
CAGCAGCAGCAGCACATGGAAAAGTAAAGGTCGACTTGCAGACTCAACGG
CCACAC
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protein sequence of NO08G02740.1

>NO08G02740.1-protein ID=NO08G02740.1-protein|Name=NO08G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=754bp
MPAARYGHNDDDDEEEEEEEEEEEVRVIRSKHRKSSLSVDAAAAAAAAGG
GGGGRGEGGGKSDDVGQIIEVDDSDGEDTNSGGGGGGIDTARAAGAAGPI
IEDRPKRRSSFPPLSPPPPAGTRWRSRRKVVLEEGRKEREKEEEREKLEQ
DSGLFDQESEEEEKEGTWRRLSGLSGRPVRRLSALSASSRRRSSSFFLTR
QGKMSEDEESADLDDFIVPDDEVEEEEEDYDDASKKTKSRKTIGRRGGGG
GTAGREDDFVAAEDEVEFMDSEEEEELVSRRKKERKERRRGLIMREKEGE
KKKKKKKKKKDKEEGGAASSGTKRRKIILASDDDDHDDNSSTNSSSSSSS
SVSSEEEESSEDEGLMHMRVHAAFLAEQGEVLPLFMQRKAMSTRDAFLLY
LEMLARSVADPAFREGMRRNPMSERYGRFSNAKKKLEDLICTKRESLLGS
MQWKLLWVEELRGRPRFEFFDILGERPDRCQVCGRRRHPCAFEVRLSGPR
YDSMALWESRRWEEALPCRLEVFGTPEGDEEVREAEEEEGKGEGEEEEEE
EEEGKPMEGKVGGWWHAGSTCKYKSLCYSSMIHYKYYLLRRVARRLKGFA
VTGARSRRVKRRERELLQSPVKARKSRKTGLYEVVVSVEELMEEEGWVEA
EFERFEKLLSLVENLMMDGGAATSTVTTARQLAGLWEEDDEKGGGGGRGR
GEGGGGRGGRRYGSARGVEEWSEEEEGEEEEEEEEEGFRAPAVEGRRGYN
PLV*
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Synonyms
Publications