NO08G02700, NO08G02700 (gene) Nannochloropsis oceanica

Overview
NameNO08G02700
Unique NameNO08G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr8:756736..758737 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:756736..758737 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02700 vs. NCBI_GenBank
Match: EWM26751.1 (hypothetical protein Naga_100001g178 [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 4.400e-56
Identity = 189/548 (34.49%), Postives = 259/548 (47.26%), Query Frame = 0 
Query:   54 ESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASSSSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLL--DTVAEN----DGK---VYLQSWLVDEDGQREVARVPVEARREEDEQ-DPEKASAAHALVCALQEEEPLLPGGACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQDQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTTFCPTLSNGRMPVSSFCKVTARGREAIIREEEE---KAAIAGAXXXXXXXXXXXXXXXXEGLRGKYIKAKIYIRQLEKELRQKVRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALSTAKIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVKDARVYQEITQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRP 589
            + +D  + + +  VDEL RLEGYHA++NEILLS   G   N      S   P+ VIDDP  L  AAE+LVL  +A R A+LYLL   ++A N     G    ++L SW +DE GQ  + R+PV  +++E E+ + E  S A  L  AL+EE PLL GG  LVAR++DR G VLG+V++   +     +D     F QA ++AL +VQD+LAS LLLLRL+  R++ +D ++A   +                                       +     + + G  PV+ F + T+  R+A     ++   +A                       LR KY+KAK YIR+LE+ LR K R + RALLARQA+EGA+R+F R EE++AL+ ELS RQEQLR EN+ L  AK++                                                                                     AVK AR YQEI+QAEL DLKESL+RMEAGTN+LRQ     +   +GG P
Sbjct:   26 QKIDSSQMECEASVDELRRLEGYHAFMNEILLSGAVGSLSNGDSDVFSPLTPQAVIDDPISLSRAAEKLVLNTIASRHANLYLLHSPSIASNILGHGGNLLPLFLTSWSMDERGQPRIKRIPVAMQQDEIERMEEEGDSTALGLNIALREEGPLLLGGVSLVARILDRKGQVLGLVEVTIDK---APEDFDGDIFPQAQVSALDSVQDELASVLLLLRLVLLRSQREDPLLAPCVNQ-------------------------AGDPAASGIVSPSTRRIQASSALGNPPVNRFSENTSFPRKAHFDSGDKFDGEALAPSIGFAGELAQQPPERGELNALRQKYLKAKSYIRRLERGLRLKTRSEGRALLARQATEGAERLFARTEELQALITELSGRQEQLRLENETLRAAKVK-ALDAANAASSQEAEARTQFESLARTHARSEDELRTRVYQLDSESRAMRANAVRYEAEKNALIRDKERLERDLLRCQKKLKDSQQAVKQARDYQEISQAELWDLKESLERMEAGTNELRQHFQYSQNY-DGGDP 543
The following BLAST results are available for this feature:
BLAST of NO08G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26751.14.400e-5634.49hypothetical protein Naga_100001g178 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008768NSK008768Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02700.1NO08G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564511gene_3598Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g178gene3797Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02700.1NO08G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02700 ID=NO08G02700|Name=NO08G02700|organism=Nannochloropsis oceanica|type=gene|length=2002bp
TCATTTCTCTACATCGCCCCTCTCACATGTTTCCCGATTACCACCCTTAT
GTCTACAGGGTAAGCCACCAGGTCGGCTGGCAAAGCACGTCATGTCTACC
GAGAGGGTGCAATCAGCCTGACTCGCCGACAGCGGGGACGTTATGCCTGA
TATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCCACGCCATG
CACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACAACATGCAT
GAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGTGCTGCA
AGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCGATGAGC
TTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTGCTCAGT
GCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATCCTCTAC
TGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACGCTGCAG
AAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTCTATCTG
CTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAGCTGGTT
AGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGGAAGCAC
GGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCGCATGCA
TTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGGCGCATG
CCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAGTGGTGC
AGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCAGATAGC
CCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGACCAGTT
GGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATCGGCTGC
AAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACCAGCAGC
AACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCGTAGCTT
GAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACGTGTCCA
CTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCATCTTTC
TGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGAGGAGGA
AAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATACAGCTAC
AGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATCAAGGCC
AAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGTGAGGGG
GCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCAAACGTA
TATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTCTCCATA
AGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGCCAAGAT
ACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGGCGAAAG
CCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCCGAGGTG
GAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAACAGTGAA
GGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGGTGGAAA
GGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTGGAGAAG
AGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTACCCAAGC
GGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCGGGACGA
ACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAGGGTGGG
AGGCCGAGGGTTTTGTAAGAAAGGCGAAATATTAGGGGGGTATTTGTACA
TATTAGAAGTAAAGTACAACAGAAAAACCGAAGGAATACATTAATAAGAC
TG
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protein sequence of NO08G02700.1

>NO08G02700.1-protein ID=NO08G02700.1-protein|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPDIRPLAASPPFAETPRHAQTTVPSLSPQRNHNMHELSTLWQFERDTCK
VLQESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASS
SSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLLDTVAENDGKVYLQ
SWLVDEDGQREVARVPVEARREEDEQDPEKASAAHALVCALQEEEPLLPG
GACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQ
DQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTSSNSNDNSRSSSPQRM
RSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVSSFCKVTARGREAIIRE
EEEKAAIAGATAITSQIQLQQQHEEEEGLRGKYIKAKIYIRQLEKELRQK
VRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALST
AKIQAELAANAATAQAEAKARMEIDTLAESKARAEVELRAQIRQLEREQE
TVKATVARLKAEAKASEVEREQMRHDMRRCQKKLEKSQNAVKDARVYQEI
TQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRPRVL*
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Synonyms
Publications