NO08G02690, NO08G02690 (gene) Nannochloropsis oceanica

Overview
NameNO08G02690
Unique NameNO08G02690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr8:755416..756498 -

Link to JBrowse

Properties
Property NameValue
DescriptionSANT/Myb domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:755416..756498 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO08G02690 vs. NCBI_GenBank
Match: EWM26623.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 5.100e-23
Identity = 59/73 (80.82%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:   50 VALSVMTIVLDQNEDLLLAIAESQRLGKNVRAAKYQRQLQENLLVLTQLCDSQEYHHKSFRDLAMKKLPKQKR 123
            + LSVMT VLDQNED+LLAI+ESQRLG+NVRAAKYQRQLQENLLVLTQLCDSQEY+ KSFR++A+KKLP+Q++
Sbjct:   15 LTLSVMTTVLDQNEDILLAISESQRLGENVRAAKYQRQLQENLLVLTQLCDSQEYYPKSFREMALKKLPRQRK 87
The following BLAST results are available for this feature:
BLAST of NO08G02690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26623.15.100e-2380.82SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008769NSK008769Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02690.1NO08G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02690.1NO08G02690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02690 ID=NO08G02690|Name=NO08G02690|organism=Nannochloropsis oceanica|type=gene|length=1083bp
ATGGAGCCTCCCTCTTTCCTTGCAGCATCCGCTGCATCAGCGACATCAGA
AGGACCACAGCCTCTGTCGCCGCCGCCGCAGCAGCAACCGCAGCAACCGA
AGGTCAAGCAGCGACAACCACGGCAGGTCCTGCAGCAGAGGCAGCCCGTG
GCGCTCTCCGTCATGACAATCGTCCTAGATCAGAACGAGGACTTGCTTCT
TGCCATCGCGGAAAGCCAGCGTCTGGGCAAGAATGTGCGGGCGGCTAAGT
ACCAACGGCAGCTCCAGGAAAACCTTTTGGTCTTGACTCAGCTATGTGAC
AGTCAAGAGTATCACCATAAGTCGTTTCGGGACCTGGCCATGAAGAAATT
ACCCAAGCAAAAAAGAGCAACTGTTAAGGAAACATCAGCATCTGAAATTG
GTCAAGGGATCGGGCAAACAATCTCGAATCAGCCGCAGCCGCTCGCCGTT
CCTTCGCAGCAGCAATTAATACAGGCCCAACCGAACAATGCAGGGGACCT
ATCGGCTGCGACAAGCAATGCTCTTGTGCCTGCGCAGCAAGAAGGAGGAG
AAAGAGGAGGGGAGGGAAGTGGAAAGGGAGGAGGAAGTGGAGAGGGAGAC
GGGAGGGAGGGGATAATCTATCAACCTCTGTCACAGCAACAACAACCCCA
ACAATTGCAGCAGCAGCTCATGATGATGCCTCAGCACGCGCGATTTCAAT
CGATGCAGCCGAGGCAACAACATCAACCACTTCAACAGCAGCAGCAGCAG
CAGCAGCAGGTTAGAGAAGGAAGTGGAGAAGGGGGAAGGGGAGGGGGAAT
GGTACAACCACAACAGCAGCTAGAGCTGATGCAGCAGCATATCCTCCAAC
AGCAGCAAATATTGCAGCAGCACCAGCAGCAATACCAAGCGATGGTCTAC
CAACAGCAGCTTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCGCTATCAACAACAACAACTACAGCAGCAGCAAGATCAAAAAGGAG
AACGAGGGCCAGGACGAGGAGGGGGGGTGGGGGGGCAGCCGCGGGCCCTT
CAGCCCTTGTACAGACGCCAATGGGGCTCATGA
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protein sequence of NO08G02690.1

>NO08G02690.1-protein ID=NO08G02690.1-protein|Name=NO08G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MEPPSFLAASAASATSEGPQPLSPPPQQQPQQPKVKQRQPRQVLQQRQPV
ALSVMTIVLDQNEDLLLAIAESQRLGKNVRAAKYQRQLQENLLVLTQLCD
SQEYHHKSFRDLAMKKLPKQKRATVKETSASEIGQGIGQTISNQPQPLAV
PSQQQLIQAQPNNAGDLSAATSNALVPAQQEGGERGGEGSGKGGGSGEGD
GREGIIYQPLSQQQQPQQLQQQLMMMPQHARFQSMQPRQQHQPLQQQQQQ
QQQVREGSGEGGRGGGMVQPQQQLELMQQHILQQQQILQQHQQQYQAMVY
QQQLLQQQQQQQQQQQQQRYQQQQLQQQQDQKGERGPGRGGGVGGQPRAL
QPLYRRQWGS*
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Synonyms
Publications