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Properties
Property Name | Value |
Description | Zinc finger, C2H2 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:749168..754160 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO:0003676 | nucleic acid binding |
Vocabulary: INTERPRO
Term | Definition |
IPR013087 | Znf_C2H2/integrase_DNA-bd |
Homology
BLAST of NO08G02670 vs. NCBI_GenBank
Match: EWM26671.1 (Zinc finger, C2H2 [Nannochloropsis gaditana]) HSP 1 Score: 507.7 bits (1306), Expect = 9.800e-140 Identity = 409/1119 (36.55%), Postives = 490/1119 (43.79%), Query Frame = 0
Query: 26 LGFASTEKTRAASMTTTKGPLIGFSEAHLLQQVHGAGETTMASISRDSTRSSSMDSTASLGHKADAELMVSFLNEIHSTGSAKSNNMNVIVEPTGPVTARPPSPSRLTREKDNTAAWEGNGESLLLCLKTKDTSSPSXXXXXXPYDTPPSTAKDKERKSSWGDQQTMAGVRGQRSSFGPAAF--LKANSSRDWARMEEVDEAEGYREKQQQRGIDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSLFNCLVTEAGNGSRKLARQRERAYGCPWYRVGYYRRCHDKYGQDASVYDSDDSEYEESAREGEVEE--------GGQG---GPYRSDLTSVRAMMLRKDKSADRAVAGVGGVPKYHRDWGKLKRRDVTRQQQRMXXXXXXXXVGGRGAQAAGLSERAXXXXXXXXXXXXXXXXYCLGKIAGTGGGWGPSPRRSPSKKEKWGFVGSSSSNGGKATNMSSSSGSLKKSKL---PAPKRQSTALTLSFEVQPNGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDEEEREQGPSNAAWVPAYNGSGSGSNLGGNVSRSASGSL-----DYNAP---------GSSTCSNHQFKMLAS-SCSXXXXXXGTSHGFNAFPRLQASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTYEGTPLVPNLVQNGKSLVGRTISYHHHHKSVHDWTDVLVRKYRPRSRCHLIVHADGTSEWAMLTDRNTRLDPGFHPSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSNPGFHMEEGLTTGASSNSVTTSGGLTCTSTPGAPFSSPGRNAFFSEQENLLLSRRPAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAHTSAESYALHLAQHIPTTSFVCRRCTKGFHNKQALGWHTRKGCNGHPGTAVTNQQQPSSSP 1114
+G + A + K +GFSEA LQ VHGAGET + S RDSTRS SMDS+ + HKADAEL++SFL E+HSTG + E T P P R E+D ++AW +GESLLL L+ K S SS Q ++ SF + L A+ + ++ + + R+ RG XXXXXX SW+LFN LV EAGNGSRKL RQ R Y CPW+RVGYYRRCHDKYGQDAS+YDS+DS+YEE++ + + GG GPY S+ +SVRA ML DKSADRAVA GGVPKYHRDWG+LKRR RQQQR+ A LG + + P+R+ SKKEK +S++GGK+ N+ SSGSLKKSK+ APKRQSTALTLSFEVQ NGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDE+ER++GPSNAAWVPA+N S SGS+LG SRS SGS D AP T S Q +M AS SC+ LQ P LP +EGT LVP + +G S VGR +SY +H ++ DV VR YR R CH +V+ D TSEW +LTDRN R D G +LS +G+ T + ++ SG T +P SP RN FFSEQ+ LLL RRP KR +T+AESYA+ LAQH P ++F+CRRC K FHNKQALGWHTRKGC GHPGTA+TN PS P
Sbjct: 26 VGNTRADSQNAKTAILGKDFQMGFSEAQ-LQHVHGAGETLVES-CRDSTRSYSMDSSDTSEHKADAELVLSFLTEMHSTGGTGQLSRGK-CESTQPSQKTQKQPERTYFEED-SSAWATDGESLLLSLRAKKPGIAS---------------------SSSSSQLATPETVSKQGSFSSESISTLSAHYVKSPDKLITTSKTDPGRKDSHVRG---------PASPVVECHGDDEXXXXXXKIIVSFRHPSVSNASFSDSGSGELAASSEEETDMWEDNATKPRSPRHPRADSASSWNLFNSLVNEAGNGSRKLERQLTRTYECPWHRVGYYRRCHDKYGQDASIYDSEDSDYEEASIIEQRDSSSGCSRICGGSAREYGPYTSEFSSVRANMLNADKSADRAVA--GGVPKYHRDWGRLKRRGTMRQQQRLKREARGRIPPNYNNVTTHDRIGADAEEDMEVRKHNSAGATNLGNLTAAAREFAVDPQRTASKKEK-----VASNSGGKSKNVHGSSGSLKKSKITGQSAPKRQSTALTLSFEVQENGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDEDERQKGPSNAAWVPAFNVSSSGSSLG--ASRSVSGSFSTEASDQPAPPTFQRADSNSRKTASEDQDRMHASTSCASKSDNRNFVRNVPFSDPLQQPP-----------RDPTSSATANSAGTFSFKHEIHTTNTSASSPPEPTSDLPVHEGTALVPAFIADGNSFVGRVVSYKNH--GARNYVDVYVRSYRSRRNCHFVVYPDTTSEWVILTDRNCRWDAGHRANLSDASSSPIRPAAE-------------------------------RKGILTSITESTHFGSG----TPNTASP-RSPPRNVFFSEQDALLLPRRPLKR---------------------------------------KADSVRDEEASSTSFTTLSEERVARKGEKSDKIDTPKPKIRRVDSNESLTASVGAPGPQHYHSHNPTLPYAQHIPHHSTGPPAYPYHVSTTGYTAAESYAMQLAQHTPASTFICRRCAKSFHNKQALGWHTRKGCYGHPGTAITN-NLPSPFP 1012
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02670 ID=NO08G02670|Name=NO08G02670|organism=Nannochloropsis oceanica|type=gene|length=4993bp CTCCTTTATTCCATGATGTAGCGCTCATCGTTTTACGAGTTGCTTGACCA ATATGCATGGCGATCCAGAGCCTTGTACACAGCATGCCTCCGGGTCCATG CACACGCCATCCTTTTGTCCCCACAAACGACACGTTTGGCCCATGTTGCT CATGCACCGGTCGCGAGCGCCGACTTGCTTGTCCGTGCCCCACGCACGAG TGTCAAGGAAGGAGCGGTTGAGCAGCACACCCCTCACATATGCATCTTGA AATTCATTCCACTGCAAAAAATGGTCCTCTCACCCGCCCACCCCATACCA CCTTCCCCACACAACACATTACACACATTCAAGAACGACTACGACCACGG CACCTGACAAGTTCCTCGCCGCGGCATTGTCCAGCCATCGTCTGGTGAAA CCCCAAGAGGGCCAGGAGAGAAGGAAAACGCGCGCACTGCCGGCATGAGC GCTGCATGCACCCCTCCGCGTACGCAAGGGGCCGGCCTCACGACGGACAC CTCGGAAGGCGTGCCCTTATTGGGCTTCGCCTCCACAGAAAAGACCAGGG CCGCGTCGATGACGACGACCAAAGGACCATTAATTGGCTTCTCCGAGGCT CATCTGCTGCAGCAGGTGCATGGGGCCGGTGAGACTACCATGGCGAGCAT CAGCCGAGATTCGACGCGGTCGTCCTCCATGGACAGCACGGCGTCGTTGG GACACAAGGCGGACGCCGAGCTGATGGTCTCGTTCCTGAACGAGATCCAT TCCACCGGATCGGCAAAGTCCAACAATATGAATGTAATCGTGGAGCCGAC GGGCCCGGTCACCGCACGACCACCGTCCCCCTCACGCTTAACCCGCGAGA AGGACAACACTGCTGCCTGGGAAGGAAACGGCGAGTCGTTGCTCCTATGT CTCAAGACCAAGGACACCTCCTCGCCTTCGACTTCGTCCTCGTCCTCTCC CTATGATACTCCACCGTCCACAGCTAAGGACAAGGAGCGCAAGTCTTCTT GGGGAGACCAACAGACCATGGCAGGCGTGCGTGGTCAACGATCATCGTTC GGTCCAGCGGCTTTCTTGAAGGCTAATTCTAGTCGGGATTGGGCTCGTAT GGAGGAGGTGGATGAGGCGGAGGGCTATAGGGAAAAGCAGCAGCAGCGTG GGATAGACGAGATGGAGGAGGATGATGCCAAGATCATGGTGGCCTTTCGA CAGACAGCGTCGTCATCGTCTTCGGATTCTGAATCTTCAGGGGGCTTCGG GGTTTCCTCGTCTTCGTCGTCCTCCTCCTCCTCCTCCGACGACGACGACG ACGACGAATTAATAATGTCAAGCGACGGTTATCAAGAGATCCATCTTGCG CGGCAGAAGCAGCAGCAACAGCAGCATCACCGGGCTGCTTCTTCTGGATC CTGGTCCTTGTTCAATTGCTTGGTGACGGAGGCGGGGAATGGGAGCAGGA AGCTGGCGAGACAACGTGAGCGTGCCTATGGTTGTCCCTGGTATCGGGTA GGGTACTATCGACGTTGCCATGACAAATACGGACAAGACGCTTCCGTTTA CGATTCGGATGACTCAGAGTATGAGGAGAGTGCGAGGGAGGGCGAGGTGG AGGAGGGAGGCCAGGGAGGACCGTACCGGAGTGACTTGACATCGGTGAGG GCGATGATGTTGCGGAAGGACAAGTCGGCGGATCGAGCGGTGGCCGGTGT AGGGGGGGTTCCCAAGTACCATCGAGATTGGGGAAAACTCAAGCGGAGGG ATGTTACTCGGCAGCAGCAGCGTATGAGGCGGGAGCGGGAGGAGAGAGGG GTTGGAGGGCGGGGGGCACAGGCAGCAGGATTAAGTGAGAGGGCTGGTGG TGGTGATGGTGTTGGTGGTCACGGAGAGAGGGAAGGAGGAGGGTATTGCT TGGGTAAGATTGCAGGAACGGGCGGCGGCTGGGGACCGAGCCCGCGACGC AGCCCGTCCAAAAAGGAGAAATGGGGTTTCGTGGGGAGCAGCAGCAGCAA CGGTGGTAAGGCCACGAACATGAGCAGCAGCAGTGGCTCTCTGAAGAAAA GCAAGCTTCCTGCCCCTAAGCGACAAAGCACAGCCTTGACCCTTTCCTTC GAAGTGCAGCCAAATGGCCTTATCCGATGCAAGCGTTGCGGAAAGCCCAA TTTTAAAAATCATTTTGCCCTCCGCTCCCACCTCTCTCACTGCCCCGGCA CCATTCACATGAAAGAGCAACGAATGAAAATCGAAGCCGGCCTTCTTCCT CCTGAGACCCCCCTTTGCTTGCCTGTCGATGAGGAGGAGCGGGAGCAAGG ACCTAGTAATGCTGCGTGGGTGCCAGCCTACAACGGCTCCGGCAGCGGGA GCAATCTGGGAGGGAATGTCAGCCGCTCAGCCTCCGGTAGCCTGGACTAT AATGCTCCAGGCAGCAGCACCTGCAGCAACCACCAGTTTAAGATGCTAGC ATCCTCTTGCTCTTCTTCCTCCGCGAGCAGCGGCACAAGTCACGGCTTCA ATGCCTTCCCCCGTCTCCAGGCCTCTCCTGGCCAACAGCAGCGGCGGCAG GAACTCAAACAACAACAACAACAACAACAACAACAACATCGCCTCCCTCC CCCGACAAGCTTTGACAAAGCAACTGCCTCAAACTCCTCTCCCTCCTCCT CCGCTCCGGAGCCAACCACAACCCTTCCCACCTACGAAGGCACCCCTCTC GTCCCCAACTTGGTCCAAAACGGCAAATCCCTCGTAGGTCGTACCATCTC CTACCACCACCACCACAAATCCGTCCACGATTGGACTGATGTCTTGGTGC GTAAGTATCGCCCACGAAGCAGATGCCACTTGATTGTACATGCGGACGGT ACCTCCGAGTGGGCTATGCTCACTGACCGAAATACGCGCCTCGACCCCGG GTTCCATCCCTCCCTCTCCTCTGCTTCCTCAGCGGCGTCCTGCTCCGATG AGGAACATGAAGATAAAGGAAAAGGGGAAACCGGTAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCTCTCCACGGCTGTCCAATCCAGGTTTCCACATGGA GGAGGGCCTGACCACTGGCGCCAGCAGTAACAGTGTCACAACCTCAGGTG GACTCACGTGTACTTCAACTCCGGGCGCTCCTTTCTCCTCTCCCGGCCGC AACGCCTTTTTTTCTGAGCAAGAGAATCTCCTCCTCTCCCGTCGCCCGGC TAAACGCAAGGCCGAGAACAGCAACAGCAGCAGCGGCATCAGCCAAGCTG AGTCGTCCCCCTCCTCCTCCTCCTCCTTTACCTTCGTCCGTAACGACCAC CGACGGCAGCAACAACAGCAGCAGGAAGAGGAAGACGAGGAGGAGGAGGG GGAGGAGGAGAGGGAGGGGGAAGGTATCGAACAACCCATGCCGAAGATCA TGCGCAGCACCAGCAGCGACAGTATATCAAACAGCGTCGGCGCTCCTGGC CCTCATCACTACCCTCTTCCCCTACCCCCCCACTTCTACAACAACCACGC CCACCAGCAGCACCAGCAGCACCAGCAGCTAAACCAACTCCCCCTTCCCC TCCCCCCTCCTCCCCCCTCCATCCCCCCTCCCTACACCTACCGCCCCGCC CACACCTCCGCCGAGTCGTACGCCCTCCACCTCGCCCAGCACATCCCTAC AACCTCCTTTGTGTGCCGCCGCTGCACCAAGGGCTTCCATAACAAACAAG CCCTCGGATGGCACACCCGCAAAGGCTGCAACGGCCACCCTGGTACTGCA GTCACCAACCAACAGCAGCCTTCCTCCTCCCCTCTCCCCCCCCCCCTCCT CCCCCACTTGCTCCCTACCCCCACCCGCACTACACCCATCCTCCTCCTGA ACACTACATGTATGCACATCATCCTCCTCCCCCACATCCTCAAATGCAGT CCATACAACATCATATGGCTGGACAGCAGCACTACCAACACTATTATTAG AGCATAAAAGTGATCGGGGTCCAAAGAGGGAGGTAAGGAGAATGGGAAGG AGGCGAATGTCTATTTTGTGTGTAAAAAGGGATATGCATGTTTGTTTGTT TGCTCTTGTTTGCATATGGATGTGTGGCTTGATTCACACACGAGATCATT CCGTTCTTTTGTTGAGCGCTGATTAGAAATATCGCGGGCTATAAAAGAGG AAAGAAAGAAGAGAGACAGATGGAAGGGGAGAGTTGGGGAATGACAATTC CAAATGGGGAGGCAGAATTTGAGTGATGAATAGAGAGAGGGTGAGAGAAG AGGAAGCGAGCAGCCTTGCGCCAAACGGGAGACGAGAGTGGGAAAGCAAA GCTGTCCCTGGCGAGGAAAGGGAGATGATGACGAGCTTCCTTTCTCAAGG GGGAGGACATGGTCAGAAATATTGCATATGTGATTTTTCGACTATACATT CATCTTCTCATCCAAATTAAATTTGTGAGTATGCTTCTGTAATTGTCTGC CCCACGGTGAGAATGGAATATCAATAAGAGATGAAGGCGAGCAAGAAGGA GGAGTAGGAGAGGTTTTACAAAAAGGAAGAGGAGGATGTCGAGATGAAAA GAACGCACACACACGAAGATTATATATATATATATGGAAAGAGAGACTGA TGGATTGAGGGAGGAAGGAAGGAAGGTGTAAAGAGCAGAGATGGATTGTA GAGATAGAACTTTCAATGGGGACACAAGCAAATACATTTCGCGGTGAAGA GAGTAGATGACCAAGTACAACAGCAAGACCGCAAGTCACAGAAGGGGAAA CGCGCCACCAGTAGCGGGAGCACGCGGAGGGGAATTCTTTGTTTTCTATT TCGGGGTCTAGGTTCATTGATCGTCTGTCGGGAAGAGAGAAGAAAAGTGT GACGGGGAGGATAGAGGGAGGAAGAAGAAGAGGCCGAGGAAGAGGCAGTG CGCAGTTTGTCAGAGCAGCCACGTAAGGGGTGGCGCCGACTCAAGCACCG ATGGTGGTAATAATATTCATCGAAAATAAATCATCATTTTTAT back to topprotein sequence of NO08G02670.1 >NO08G02670.1-protein ID=NO08G02670.1-protein|Name=NO08G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1171bp MSAACTPPRTQGAGLTTDTSEGVPLLGFASTEKTRAASMTTTKGPLIGFS EAHLLQQVHGAGETTMASISRDSTRSSSMDSTASLGHKADAELMVSFLNE IHSTGSAKSNNMNVIVEPTGPVTARPPSPSRLTREKDNTAAWEGNGESLL LCLKTKDTSSPSTSSSSSPYDTPPSTAKDKERKSSWGDQQTMAGVRGQRS SFGPAAFLKANSSRDWARMEEVDEAEGYREKQQQRGIDEMEEDDAKIMVA FRQTASSSSSDSESSGGFGVSSSSSSSSSSSDDDDDDELIMSSDGYQEIH LARQKQQQQQHHRAASSGSWSLFNCLVTEAGNGSRKLARQRERAYGCPWY RVGYYRRCHDKYGQDASVYDSDDSEYEESAREGEVEEGGQGGPYRSDLTS VRAMMLRKDKSADRAVAGVGGVPKYHRDWGKLKRRDVTRQQQRMRREREE RGVGGRGAQAAGLSERAGGGDGVGGHGEREGGGYCLGKIAGTGGGWGPSP RRSPSKKEKWGFVGSSSSNGGKATNMSSSSGSLKKSKLPAPKRQSTALTL SFEVQPNGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGL LPPETPLCLPVDEEEREQGPSNAAWVPAYNGSGSGSNLGGNVSRSASGSL DYNAPGSSTCSNHQFKMLASSCSSSSASSGTSHGFNAFPRLQASPGQQQR RQELKQQQQQQQQQHRLPPPTSFDKATASNSSPSSSAPEPTTTLPTYEGT PLVPNLVQNGKSLVGRTISYHHHHKSVHDWTDVLVRKYRPRSRCHLIVHA DGTSEWAMLTDRNTRLDPGFHPSLSSASSAASCSDEEHEDKGKGETGSSS SSSSSSSSPRLSNPGFHMEEGLTTGASSNSVTTSGGLTCTSTPGAPFSSP GRNAFFSEQENLLLSRRPAKRKAENSNSSSGISQAESSPSSSSSFTFVRN DHRRQQQQQQEEEDEEEEGEEEREGEGIEQPMPKIMRSTSSDSISNSVGA PGPHHYPLPLPPHFYNNHAHQQHQQHQQLNQLPLPLPPPPPSIPPPYTYR PAHTSAESYALHLAQHIPTTSFVCRRCTKGFHNKQALGWHTRKGCNGHPG TAVTNQQQPSSSPLPPPLLPHLLPTPTRTTPILLLNTTCMHIILLPHILK CSPYNIIWLDSSTTNTIIRA* back to top
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