NO08G02610, NO08G02610 (gene) Nannochloropsis oceanica

Overview
NameNO08G02610
Unique NameNO08G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length621
Alignment locationchr8:734688..735308 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:734688..735308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO08G02610 vs. NCBI_GenBank
Match: EWM26691.1 (hypothetical protein Naga_100001g166 [Nannochloropsis gaditana])

HSP 1 Score: 190.7 bits (483), Expect = 4.700e-45
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 0 
Query:   81 ITKPFFAILSTIIVLLSLVSVAYNLYLIIQKDGTTTSILPRIYRGFAIVLAFAAILTEASVKWWKKLCPVLSYLFVRGFFYCLIAILSLEDFNARDDNVVGFVFLGFGLFYVALALMCVQRHVEI 206
            ITKPFFA+LST  VLLSLVSVAYNLYLI  KD  T SILPRI+RGFAIVLAF AIL E+ +KWW+KLCP+LS  FVRGFFYCLIA LS+EDF+   DNV+GFVFL  GLFYVAL ++CV+RHVEI
Sbjct:  120 ITKPFFAVLSTFTVLLSLVSVAYNLYLIATKDKDTNSILPRIHRGFAIVLAFPAILNESGIKWWRKLCPILSNFFVRGFFYCLIACLSIEDFSPSSDNVMGFVFLSLGLFYVALGMLCVRRHVEI 244
The following BLAST results are available for this feature:
BLAST of NO08G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26691.14.700e-4575.20hypothetical protein Naga_100001g166 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02610.1NO08G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582702gene_3589Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g166gene3806Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02610.1NO08G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02610 ID=NO08G02610|Name=NO08G02610|organism=Nannochloropsis oceanica|type=gene|length=621bp
ATGTCCTCAAATAATGCCAGCCCACGTTGGCTGGAAGAAGAGGCTACAGA
TGCCTTGATGGAACCAGAGGAAGGGCTAGAAGGAGGAGGAGACGAGGAAG
AGCTACCTGCAGGAGGAAGGGTCACACGCTCTTCTACAAAAGCGGATTCG
GGACGAAAGAGGCAGACATGGAAGTTAGCAGGACATTTTAGTCCGCAGCA
AACTGAGGAAGACGACACACAGGGAGAGCGGAAACGGCGCATCACTAAGC
CCTTTTTCGCCATTCTTAGCACGATTATCGTATTGCTGAGCCTCGTGAGC
GTCGCCTATAACCTCTACTTGATTATCCAAAAAGACGGTACCACTACCTC
AATCCTTCCCCGCATCTATCGGGGGTTTGCCATTGTGCTCGCCTTTGCAG
CTATTTTAACAGAGGCTAGCGTGAAGTGGTGGAAGAAGCTCTGCCCAGTC
CTTTCTTACCTCTTCGTGCGTGGGTTTTTTTATTGCCTAATTGCTATTTT
GAGTCTGGAAGACTTCAACGCCAGAGATGACAATGTGGTAGGATTTGTTT
TTTTGGGGTTTGGTCTCTTCTATGTCGCATTGGCCCTTATGTGTGTGCAA
CGGCATGTGGAAATTATGTAG
back to top

protein sequence of NO08G02610.1

>NO08G02610.1-protein ID=NO08G02610.1-protein|Name=NO08G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSSNNASPRWLEEEATDALMEPEEGLEGGGDEEELPAGGRVTRSSTKADS
GRKRQTWKLAGHFSPQQTEEDDTQGERKRRITKPFFAILSTIIVLLSLVS
VAYNLYLIIQKDGTTTSILPRIYRGFAIVLAFAAILTEASVKWWKKLCPV
LSYLFVRGFFYCLIAILSLEDFNARDDNVVGFVFLGFGLFYVALALMCVQ
RHVEIM*
back to top
Synonyms
Publications