NO08G02580, NO08G02580 (gene) Nannochloropsis oceanica

Overview
NameNO08G02580
Unique NameNO08G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length903
Alignment locationchr8:728343..729245 -

Link to JBrowse

Properties
Property NameValue
DescriptionCheY-like superfamily
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:728343..729245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000160phosphorelay signal transduction system
GO:0000160phosphorelay signal transduction system
Vocabulary: INTERPRO
TermDefinition
IPR011006CheY-like_superfamily
IPR001789Sig_transdc_resp-reg_receiver
Homology
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BLAST of NO08G02580 vs. NCBI_GenBank
Match: EWM26632.1 (CheY-like superfamily [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 5.600e-39
Identity = 107/249 (42.97%), Postives = 147/249 (59.04%), Query Frame = 0 
Query:   53 PRLVRVLFVDTYVARASEIRRALEHESRGGLFPELVAAFDVVREGLEALALAQVVPYDAVFLSAGLRDITADELVGDIMKIGLRVPLVLMAAPHTVDTQKAAACGFNAILLRPVTGAGLVGVIRALCLSPPPSTSQQSEMLGPASQAVARASHASPSSSSLQAA-TNITRPVLPPPQNLPDWEDVIVGAATIYED-GDIQASSISSWRPPQILRMPISETLSHLRLQAHEPKRVAPAPRGWCVKKKFKT 300
            PRL+RV+ VDTY+A+AS+IR+ LEHE    L P  VAAFDVV++G+EALALA  VPYDA+FLS  L  ITA+ELV D+ +IG    +V++     V +   +A GF A LLRPVTG+ +   +RAL  SP   +S          +     + +SP +S  ++A  +    ++PP ++LPDW       + I E    +   + S WRPPQIL M ISETL HL LQ    K+V    RG+C+   + T
Sbjct:   30 PRLLRVMVVDTYIAQASDIRQFLEHEVGRDLVPGFVAAFDVVQDGVEALALAHGVPYDAIFLSESLHGITAEELVSDLFRIGSDAFMVMIVGAQCVRSDSISAAGFTATLLRPVTGSKIADALRAL-YSPQGLSSHSPRSTESFMRKNPPVNMSSPFTSLTRSARADRVETLIPPARDLPDWTHFTPRISDIDESYHSLSGDATSFWRPPQILSMAISETLGHLLLQG--GKKVKSENRGYCIGSAWLT 275
The following BLAST results are available for this feature:
BLAST of NO08G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26632.15.600e-3942.97CheY-like superfamily [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008781NSK008781Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02580.1NO08G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g162gene3809Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02580.1NO08G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02580 ID=NO08G02580|Name=NO08G02580|organism=Nannochloropsis oceanica|type=gene|length=903bp
ATGGCGCAGGACAAGAGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAAT
ACCAAAGTGTCCGCTGGTAGCACCATCATCATCCTTCCCAGAAAGAATGC
GAGTGCCGTCAGAGCTAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTC
CAGCCCCCACGTCTCGTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCG
TGCAAGCGAGATCCGGCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGT
TCCCGGAACTGGTGGCGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCC
TTGGCCCTCGCTCAGGTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGG
ATTGCGTGACATAACGGCAGATGAGCTGGTGGGAGACATTATGAAAATTG
GTTTGCGTGTGCCCTTGGTCCTGATGGCCGCGCCACACACCGTCGACACC
CAAAAGGCAGCTGCCTGTGGCTTCAACGCCATATTGTTGCGGCCTGTGAC
GGGAGCAGGCTTGGTCGGTGTGATCCGGGCCTTGTGTCTGTCACCACCAC
CATCGACAAGCCAACAGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTA
GCGCGTGCCTCGCACGCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAAC
TAATATAACGCGCCCCGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGG
AGGATGTAATTGTAGGGGCTGCTACTATCTACGAGGATGGCGATATTCAA
GCCTCTTCGATATCGTCTTGGCGGCCACCTCAAATTCTGCGCATGCCTAT
TAGCGAGACCTTGAGTCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAG
TAGCACCTGCACCTCGAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTG
TAG
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protein sequence of NO08G02580.1

>NO08G02580.1-protein ID=NO08G02580.1-protein|Name=NO08G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAQDKSRVPDKPPLSQIPKCPLVAPSSSFPERMRVPSELETAVAPQPFLL
QPPRLVRVLFVDTYVARASEIRRALEHESRGGLFPELVAAFDVVREGLEA
LALAQVVPYDAVFLSAGLRDITADELVGDIMKIGLRVPLVLMAAPHTVDT
QKAAACGFNAILLRPVTGAGLVGVIRALCLSPPPSTSQQSEMLGPASQAV
ARASHASPSSSSLQAATNITRPVLPPPQNLPDWEDVIVGAATIYEDGDIQ
ASSISSWRPPQILRMPISETLSHLRLQAHEPKRVAPAPRGWCVKKKFKTV
*
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Synonyms
Publications