NO08G02450, NO08G02450 (gene) Nannochloropsis oceanica

Overview
NameNO08G02450
Unique NameNO08G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr8:709571..710068 +

Link to JBrowse

Properties
Property NameValue
DescriptionDpy-30-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:709571..710068 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0044666MLL3/4 complex
GO:0048188Set1C/COMPASS complex
GO:0005654nucleoplasm
Vocabulary: INTERPRO
TermDefinition
IPR037856DPY30
IPR007858Dpy-30_motif
Homology
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: EWM26597.1 (dpy-30-like protein [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 8.100e-19
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQKSE 131
            K NMQSLPIRAYLDQTVVPILLDGMSQLV ERP NPIEWLAAYLIKNNPQK E
Sbjct:   83 KVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQKFE 135
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_009836981.1 (hypothetical protein H257_11682 [Aphanomyces astaci] >ETV73555.1 hypothetical protein H257_11682 [Aphanomyces astaci])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K ++QSLPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:   54 KLDVQSLPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 103
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_008872246.1 (hypothetical protein H310_08322 [Aphanomyces invadans] >ETV98818.1 hypothetical protein H310_08322 [Aphanomyces invadans])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K ++QSLPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:   54 KLDVQSLPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 103
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: OWY95399.1 (hypothetical protein PHMEG_00034605 [Phytophthora megakarya])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQK 129
            K  +Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLA+YLIKNNPQK
Sbjct:   87 KVEVQALPIRAYLDQTVVPILLQGMSALVKERPANPIEWLASYLIKNNPQK 137
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_008618106.1 (hypothetical protein SDRG_13786 [Saprolegnia diclina VS20] >EQC28458.1 hypothetical protein SDRG_13786 [Saprolegnia diclina VS20])

HSP 1 Score: 90.5 bits (223), Expect = 4.200e-15
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K ++Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:   49 KLDVQALPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 98
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_002903232.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55656.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 90.5 bits (223), Expect = 4.200e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQKS 130
            K  +Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYL+KNNPQ S
Sbjct:   95 KVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLLKNNPQGS 146
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_002903267.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55691.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 90.5 bits (223), Expect = 4.200e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQKS 130
            K  +Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYL+KNNPQ S
Sbjct:   95 KVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLLKNNPQGS 146
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_012207538.1 (hypothetical protein SPRG_13151 [Saprolegnia parasitica CBS 223.65] >KDO21735.1 hypothetical protein SPRG_13151 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.5 bits (223), Expect = 4.200e-15
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K ++Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:   48 KLDVQALPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 97
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: XP_009531180.1 (hypothetical protein PHYSODRAFT_355015 [Phytophthora sojae] >EGZ13751.1 hypothetical protein PHYSODRAFT_355015 [Phytophthora sojae])

HSP 1 Score: 90.1 bits (222), Expect = 5.400e-15
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K  +Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:  105 KVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 154
[Close]
BLAST of NO08G02450 vs. NCBI_GenBank
Match: OQR82926.1 (hypothetical protein ACHHYP_15297 [Achlya hypogyna])

HSP 1 Score: 90.1 bits (222), Expect = 5.400e-15
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   78 KANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQ 128
            K ++Q+LPIRAYLDQTVVPILL GMS LV+ERP NPIEWLAAYLIKNNPQ
Sbjct:   52 KLDVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 101
The following BLAST results are available for this feature:
BLAST of NO08G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26597.18.100e-1992.45dpy-30-like protein [Nannochloropsis gaditana][more]
XP_009836981.11.900e-1586.00hypothetical protein H257_11682 [Aphanomyces astac... [more]
XP_008872246.11.900e-1586.00hypothetical protein H310_08322 [Aphanomyces invad... [more]
OWY95399.11.900e-1582.35hypothetical protein PHMEG_00034605 [Phytophthora ... [more]
XP_008618106.14.200e-1584.00hypothetical protein SDRG_13786 [Saprolegnia dicli... [more]
XP_002903232.14.200e-1580.77conserved hypothetical protein [Phytophthora infes... [more]
XP_002903267.14.200e-1580.77conserved hypothetical protein [Phytophthora infes... [more]
XP_012207538.14.200e-1584.00hypothetical protein SPRG_13151 [Saprolegnia paras... [more]
XP_009531180.15.400e-1584.00hypothetical protein PHYSODRAFT_355015 [Phytophtho... [more]
OQR82926.15.400e-1584.00hypothetical protein ACHHYP_15297 [Achlya hypogyna... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008789NSK008789Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02450.1NO08G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582666gene_3575Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g153gene3817Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02450.1NO08G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02450 ID=NO08G02450|Name=NO08G02450|organism=Nannochloropsis oceanica|type=gene|length=498bp
ATGGAAAAGACCAGCGAGATGATTCAACATgtgagtgataaatagtatgt
gtgcacagagaaagcgaggagaaagcgaagaagcgaagaaccggtcgcgc
gcttattacaacccactcctttcccgcacaagcagACACAGCCAGCGGCG
GCAGGAGCACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGG
TGGTGGTGGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACG
AGGACGGAGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATG
GCAGTGGCCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCA
GTCCTTGCCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTT
TAGACGGTATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAG
TGGTTGGCAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAG
back to top

protein sequence of NO08G02450.1

>NO08G02450.1-protein ID=NO08G02450.1-protein|Name=NO08G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MEKTSEMIQHTQPAAAGAPETSETVAASMNTGGGGSNAQQDTPSPALDED
GGGIQGAGEDDKKKMAVAAAAAQQEQDKANMQSLPIRAYLDQTVVPILLD
GMSQLVQERPGNPIEWLAAYLIKNNPQKSE*
back to top
Synonyms
Publications