NO08G02420, NO08G02420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G02420 vs. NCBI_GenBank
Match: EWM26726.1 (sco1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 243.4 bits (620), Expect = 5.400e-61 Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 0 Query: 15 SKSTLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDFTGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHP 151 ++S PVTW L +MAVTG GLAY+YQ EKE+ QQQALGKVTSYGKPALGGPWTLVDFTG+PVTDADFRGEFLLLYFGFTHCPDICPSELVKVG+ILD LD+EP LP+VRPVFISVDPDRDNVGQLRHYAQ P Sbjct: 60 ARSEKMPVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195
BLAST of NO08G02420 vs. NCBI_GenBank
Match: GAX94714.1 (Hypothetical protein PINS_002596 [Pythium insidiosum]) HSP 1 Score: 210.3 bits (534), Expect = 5.100e-51 Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW+SL L +V GAG YY EKE+ Q Q KV S GKP LGGPWTLVD TG+ VTDA FRG+F LLYFGFTHCPDICP+ELV++G +LD L KE P V P+FI+VDP+RD + Q+ Y +DFHP LTGT++Q+A +TK YRVYFSK E Sbjct: 44 PITWSSLALASVVGAGAVYYXYTEKERLQTQTTSKVVSIGKPLLGGPWTLVDCDTGRAVTDASFRGKFTLLYFGFTHCPDICPNELVRIGDVLDKLSKEENAPEVLPLFITVDPNRDTIAQMLEYKKDFHPSFKMLTGTRDQVADITKSYRVYFSKADE 202
BLAST of NO08G02420 vs. NCBI_GenBank
Match: GAX94708.1 (SCO1 family protein [Pythium insidiosum]) HSP 1 Score: 210.3 bits (534), Expect = 5.100e-51 Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW+SL L +V GAG YY EKE+ Q Q KV S GKP LGGPWTLVD TG+ VTDA FRG+F LLYFGFTHCPDICP+ELV++G +LD L KE P V P+FI+VDP+RD + Q+ Y +DFHP LTGT++Q+A +TK YRVYFSK E Sbjct: 44 PITWSSLALASVVGAGAVYYXYTEKERLQTQTTSKVVSIGKPLLGGPWTLVDCDTGRAVTDASFRGKFTLLYFGFTHCPDICPNELVRIGDVLDKLSKEENAPEVLPLFITVDPNRDTIAQMLEYKKDFHPSFKMLTGTRDQVADITKSYRVYFSKADE 202
BLAST of NO08G02420 vs. NCBI_GenBank
Match: CCI48695.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 208.0 bits (528), Expect = 2.500e-50 Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW L L AV G+G+ YYY EK++ Q Q KV S GKP LGGPWTLVD T + VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD L ++P+ P V P+FI+VDP RD++ Q++ Y +DFHP + LTGTQEQ+ VT+ YRV+FSK E Sbjct: 67 PITWTGLALAAVIGSGVVYYYYNEKDRLQTQTTTKVVSIGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDQLKRDPKCPQVLPLFITVDPRRDSIAQMQAYKKDFHPFMKMLTGTQEQVRDVTRAYRVFFSKATE 225
BLAST of NO08G02420 vs. NCBI_GenBank
Match: POM69970.1 (SCO1 family protein [Phytophthora palmivora var. palmivora] >POM72615.1 SCO1 family protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 202.2 bits (513), Expect = 1.400e-48 Identity = 94/170 (55.29%), Postives = 124/170 (72.94%), Query Frame = 0 Query: 11 PIPLSKS-TLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+P +++ P+TW+ L L V G+G+ YYY EK++ Q Q+ KVTS GKP LGGPWTLVD T + VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E P V P+F++VDP RD + Q++ Y DFHP+ LTGT++Q+A +TK YRVYFSK E Sbjct: 31 PVPGTRADKFGPITWSGLALAGVVGSGVVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADE 199
BLAST of NO08G02420 vs. NCBI_GenBank
Match: ETK78257.1 (hypothetical protein L915_15684 [Phytophthora parasitica] >ETL31692.1 hypothetical protein L916_15579 [Phytophthora parasitica] >ETP07932.1 hypothetical protein F441_15966 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 201.4 bits (511), Expect = 2.300e-48 Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 0 Query: 11 PIPLSKS-TLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+P +++ P+TW+ L L V G+G YYY EK++ Q Q+ KVTS GKP LGGPWTLVD T + VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E P V P+F++VDP RD + Q++ Y DFHP+ LTGT++Q+A +TK YRVYFSK E Sbjct: 31 PVPGTRAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADE 199
BLAST of NO08G02420 vs. NCBI_GenBank
Match: XP_008911232.1 (hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >ETN03459.1 hypothetical protein PPTG_15690 [Phytophthora parasitica INRA-310] >ETO66812.1 hypothetical protein F444_16123 [Phytophthora parasitica P1976] >ETP35963.1 hypothetical protein F442_15991 [Phytophthora parasitica P10297] >KUF76779.1 SCO1 protein [Phytophthora nicotianae]) HSP 1 Score: 201.4 bits (511), Expect = 2.300e-48 Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 0 Query: 11 PIPLSKS-TLKPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+P +++ P+TW+ L L V G+G YYY EK++ Q Q+ KVTS GKP LGGPWTLVD T + VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E P V P+F++VDP RD + Q++ Y DFHP+ LTGT++Q+A +TK YRVYFSK E Sbjct: 31 PVPGTRAEKFGPITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADE 199
BLAST of NO08G02420 vs. NCBI_GenBank
Match: CCA22612.1 (SCO1 family protein putative [Albugo laibachii Nc14]) HSP 1 Score: 201.1 bits (510), Expect = 3.100e-48 Identity = 89/159 (55.97%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW L L + G+G+ YYY EK++ Q Q KV S GKP LGGPWTLVD T + VTDA FRG+ LLLYFGFTHCPDICP+ELV++G +LD L ++P+ P V P+F++VDP RD++ Q++ Y QDFHP + LTGT +Q+ +T+ YRV+FSK E Sbjct: 67 PITWTGLALATIVGSGVVYYYFNEKDRLQTQTTTKVVSVGKPLLGGPWTLVDCDTRRAVTDASFRGQHLLLYFGFTHCPDICPNELVRIGNVLDNLKRDPKCPDVLPLFVTVDPRRDSIVQMQAYKQDFHPSMKMLTGTPDQVRDITRAYRVFFSKATE 225
BLAST of NO08G02420 vs. NCBI_GenBank
Match: ETI38043.1 (hypothetical protein F443_16138 [Phytophthora parasitica P1569] >ETM38067.1 hypothetical protein L914_15536 [Phytophthora parasitica]) HSP 1 Score: 201.1 bits (510), Expect = 3.100e-48 Identity = 92/159 (57.86%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW+ L L V G+G YYY EK++ Q Q+ KVTS GKP LGGPWTLVD T + VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E P V P+F++VDP RD + Q++ Y DFHP+ LTGT++Q+A +TK YRVYFSK E Sbjct: 42 PITWSGLALAGVVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDKLEAE-NCPEVVPLFVTVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADE 199
BLAST of NO08G02420 vs. NCBI_GenBank
Match: XP_002903102.1 (SCO1 family protein [Phytophthora infestans T30-4] >EEY55526.1 SCO1 family protein [Phytophthora infestans T30-4]) HSP 1 Score: 201.1 bits (510), Expect = 3.100e-48 Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 21 PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKVRE 179 P+TW+ L L + G+G YYY EK++ Q Q+ KVTS GKP LGGPWTLVD T + VTDA FRG++ LLYFGFTHCPDICP+ELV++G +LD L+ E P V P+F++VDP RD + Q++ Y DFHP+ LTGT++Q+A +TK YRVYFSK E Sbjct: 23 PITWSGLALAGIVGSGAVYYYYSEKDRLQTQSTSKVTSVGKPLLGGPWTLVDCDTRRAVTDASFRGKYSLLYFGFTHCPDICPNELVRIGDVLDTLEAE-NCPEVVPLFVTVDPKRDTIAQMQAYKADFHPKFKMLTGTRDQVADITKAYRVYFSKADE 180 The following BLAST results are available for this feature:
BLAST of NO08G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02420 ID=NO08G02420|Name=NO08G02420|organism=Nannochloropsis oceanica|type=gene|length=4094bpback to top protein sequence of NO08G02420.5 >NO08G02420.5-protein ID=NO08G02420.5-protein|Name=NO08G02420.5|organism=Nannochloropsis oceanica|type=polypeptide|length=184bpback to top protein sequence of NO08G02420.4 >NO08G02420.4-protein ID=NO08G02420.4-protein|Name=NO08G02420.4|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top protein sequence of NO08G02420.3 >NO08G02420.3-protein ID=NO08G02420.3-protein|Name=NO08G02420.3|organism=Nannochloropsis oceanica|type=polypeptide|length=231bpback to top protein sequence of NO08G02420.2 >NO08G02420.2-protein ID=NO08G02420.2-protein|Name=NO08G02420.2|organism=Nannochloropsis oceanica|type=polypeptide|length=231bpback to top protein sequence of NO08G02420.1 >NO08G02420.1-protein ID=NO08G02420.1-protein|Name=NO08G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bpback to top Synonyms
Publications
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