NO08G02400, NO08G02400 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO08G02400 vs. NCBI_GenBank
Match: EWM26663.1 (hypothetical protein Naga_100001g149 [Nannochloropsis gaditana]) HSP 1 Score: 445.3 bits (1144), Expect = 2.600e-121 Identity = 253/457 (55.36%), Postives = 300/457 (65.65%), Query Frame = 0 Query: 56 SVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTATDNRAERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEGY--KGR-----ETPQEGEARKDSAQEEKGGM-GCREYHGRR-------QRGXXXXXXXGRIGWRVWGQDYEGEGXXXXXXXXXXXXXVVPKRPRQEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDE 498 + HPLLRL+D TE L+R D+RVGYP +P+V PESFGWLF AQQILL++VL + TR+VVQLGAYLGKTTLFIAEHAPRALIFV+DPWDNA LK EPSLNKNFANIDLF+R+PFY TFLRNTWHLAARR ++ + LVGVVPLRM F+EG+ALLK+ L+LRPDVLYWEGFP+E GL QTL VKEAFPGVVVVGDGYNY EVQ GL +AS+ L+Q+RKPFVEMGKCWT+LRLK MLS+LR KYTA DNRA+RT+L KEVAGASFKDLLSGLKSKS+QLK +EA +G KG GE+ + GG GC + HGR +RG G R Q E PRQ E+S+ + ++ W R E+DESEDDE ++ + +D+ Sbjct: 35 TAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGAEFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESG----SAPRQ--REESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDD 485
BLAST of NO08G02400 vs. NCBI_GenBank
Match: WP_015249477.1 (class I SAM-dependent methyltransferase [Singulisphaera acidiphila] >AGA30391.1 hypothetical protein Sinac_6305 [Singulisphaera acidiphila DSM 18658]) HSP 1 Score: 100.5 bits (249), Expect = 1.500e-17 Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 0 Query: 59 PLLRLADLTENLMRKDARVGYPSAEPEVEPESF-GWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASK 266 P + AD ++ AR +PS +P+V P WLF + Q + + + + RV+V++G++ G++T F+A+HAP AL+ +D W + P + + + R+ Y+TFL W R VVP+R EGL + AD LRPDV++ + + L + FP ++GD +N+ V+ + A + Sbjct: 458 PPVATADAKPAVLEFLARHPWPSEKPKVPPPPIRNWLFPSTQAVFEETIPQDARVIVEVGSFTGRSTRFLADHAPTALVIAIDHW-----RGSPEMANDPEVVAFLPRL--YETFLAECWLFRDR-----------VVPVRRSSLEGLREV-ADAGLRPDVIFIDADHSYEAVRADLACALDLFPQARIIGDDWNWGSVRQAVQEACR 646
BLAST of NO08G02400 vs. NCBI_GenBank
Match: WP_074306949.1 (class I SAM-dependent methyltransferase [Singulisphaera sp. GP187] >SIO06122.1 Methyltransferase domain-containing protein [Singulisphaera sp. GP187]) HSP 1 Score: 94.7 bits (234), Expect = 8.500e-16 Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = 0 Query: 63 LADLTENLMRK-DARVGYPSAEPEVEPESF-GWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASKD 267 LADL + R AR +P +PEV P WLF + + +L+ + ++ RV+V++G++ G++T F+ +HAP A++ +D W + P + + + R+ Y+TFL W R V+P+R EGL + A LRPDV++ + + L + + FP ++GD +N+ V+ + ++ Sbjct: 461 LADLADPAARAFVARHPWPDKKPEVPPPPIRNWLFPSTREVLERTIPEDARVIVEVGSFTGRSTRFLTDHAPAAIVIAIDHW-----RGSPEMANDPELVAWLPRL--YETFLAECWLYRDR-----------VIPVRRSSVEGLQEVAA-AGLRPDVIFIDADHSYEAVRADLSSTLDLFPQARIIGDDWNWESVRQAVQAVCRE 647
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005785813.1 (hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516] >EOD33384.1 hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 75.5 bits (184), Expect = 5.300e-10 Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = 0 Query: 92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258 GW+ + +L +L + + R VV+LG++ G T + E APR +F VD WD L PSL + + + + + FL N W R V PLRM +GLA + A L D++Y + A +L L FP ++ GD + + +VQ Sbjct: 16 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSLREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 174
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005770297.1 (hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516] >EOD17868.1 hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 73.2 bits (178), Expect = 2.600e-9 Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0 Query: 92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258 GW+ + +L +L + + R VV+LG++ G T + E APR +F VD WD L PS + + + + + FL N W R V PLRM +GLA + A L D++Y + A +L L FP ++ GD + + +VQ Sbjct: 51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 209
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005773264.1 (hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516] >EOD20835.1 hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 73.2 bits (178), Expect = 2.600e-9 Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0 Query: 92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258 GW+ + +L +L + + R VV+LG++ G T + E APR +F VD WD L PS + + + + + FL N W R V PLRM +GLA + A L D++Y + A +L L FP ++ GD + + +VQ Sbjct: 51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 209 The following BLAST results are available for this feature:
BLAST of NO08G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02400 ID=NO08G02400|Name=NO08G02400|organism=Nannochloropsis oceanica|type=gene|length=2012bpback to top protein sequence of NO08G02400.1 >NO08G02400.1-protein ID=NO08G02400.1-protein|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bpback to top Synonyms
Publications
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