NO08G02400, NO08G02400 (gene) Nannochloropsis oceanica

Overview
NameNO08G02400
Unique NameNO08G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2012
Alignment locationchr8:698078..700089 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:698078..700089 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G02400 vs. NCBI_GenBank
Match: EWM26663.1 (hypothetical protein Naga_100001g149 [Nannochloropsis gaditana])

HSP 1 Score: 445.3 bits (1144), Expect = 2.600e-121
Identity = 253/457 (55.36%), Postives = 300/457 (65.65%), Query Frame = 0
Query:   56 SVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTATDNRAERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEGY--KGR-----ETPQEGEARKDSAQEEKGGM-GCREYHGRR-------QRGXXXXXXXGRIGWRVWGQDYEGEGXXXXXXXXXXXXXVVPKRPRQEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDE 498
            + HPLLRL+D TE L+R D+RVGYP  +P+V PESFGWLF AQQILL++VL + TR+VVQLGAYLGKTTLFIAEHAPRALIFV+DPWDNA LK EPSLNKNFANIDLF+R+PFY TFLRNTWHLAARR  ++ + LVGVVPLRM F+EG+ALLK+ L+LRPDVLYWEGFP+E GL QTL  VKEAFPGVVVVGDGYNY EVQ GL +AS+ L+Q+RKPFVEMGKCWT+LRLK  MLS+LR KYTA DNRA+RT+L  KEVAGASFKDLLSGLKSKS+QLK +EA                                  +G   KG           GE+ +       GG  GC + HGR        +RG       G    R   Q    E                   PRQ   E+S+ + ++ W R     E+DESEDDE    ++ + +D+
Sbjct:   35 TAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGAEFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESG----SAPRQ--REESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDD 485          
BLAST of NO08G02400 vs. NCBI_GenBank
Match: WP_015249477.1 (class I SAM-dependent methyltransferase [Singulisphaera acidiphila] >AGA30391.1 hypothetical protein Sinac_6305 [Singulisphaera acidiphila DSM 18658])

HSP 1 Score: 100.5 bits (249), Expect = 1.500e-17
Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 0
Query:   59 PLLRLADLTENLMRKDARVGYPSAEPEVEPESF-GWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASK 266
            P +  AD    ++   AR  +PS +P+V P     WLF + Q + +  +  + RV+V++G++ G++T F+A+HAP AL+  +D W     +  P +  +   +    R+  Y+TFL   W    R           VVP+R    EGL  + AD  LRPDV++ +       +   L    + FP   ++GD +N+  V+  +  A +
Sbjct:  458 PPVATADAKPAVLEFLARHPWPSEKPKVPPPPIRNWLFPSTQAVFEETIPQDARVIVEVGSFTGRSTRFLADHAPTALVIAIDHW-----RGSPEMANDPEVVAFLPRL--YETFLAECWLFRDR-----------VVPVRRSSLEGLREV-ADAGLRPDVIFIDADHSYEAVRADLACALDLFPQARIIGDDWNWGSVRQAVQEACR 646          
BLAST of NO08G02400 vs. NCBI_GenBank
Match: WP_074306949.1 (class I SAM-dependent methyltransferase [Singulisphaera sp. GP187] >SIO06122.1 Methyltransferase domain-containing protein [Singulisphaera sp. GP187])

HSP 1 Score: 94.7 bits (234), Expect = 8.500e-16
Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = 0
Query:   63 LADLTENLMRK-DARVGYPSAEPEVEPESF-GWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASKD 267
            LADL +   R   AR  +P  +PEV P     WLF + + +L+  + ++ RV+V++G++ G++T F+ +HAP A++  +D W     +  P +  +   +    R+  Y+TFL   W    R           V+P+R    EGL  + A   LRPDV++ +       +   L +  + FP   ++GD +N+  V+  +    ++
Sbjct:  461 LADLADPAARAFVARHPWPDKKPEVPPPPIRNWLFPSTREVLERTIPEDARVIVEVGSFTGRSTRFLTDHAPAAIVIAIDHW-----RGSPEMANDPELVAWLPRL--YETFLAECWLYRDR-----------VIPVRRSSVEGLQEVAA-AGLRPDVIFIDADHSYEAVRADLSSTLDLFPQARIIGDDWNWESVRQAVQAVCRE 647          
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005785813.1 (hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516] >EOD33384.1 hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.5 bits (184), Expect = 5.300e-10
Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = 0
Query:   92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258
            GW+    + +L  +L + + R VV+LG++ G  T  + E APR  +F VD WD   L   PSL + +      + +      +  FL N W    R           V PLRM   +GLA + A L    D++Y +     A +L  L      FP  ++ GD + + +VQ
Sbjct:   16 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSLREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 174          
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005770297.1 (hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516] >EOD17868.1 hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.2 bits (178), Expect = 2.600e-9
Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0
Query:   92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258
            GW+    + +L  +L + + R VV+LG++ G  T  + E APR  +F VD WD   L   PS  + +      + +      +  FL N W    R           V PLRM   +GLA + A L    D++Y +     A +L  L      FP  ++ GD + + +VQ
Sbjct:   51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 209          
BLAST of NO08G02400 vs. NCBI_GenBank
Match: XP_005773264.1 (hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516] >EOD20835.1 hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.2 bits (178), Expect = 2.600e-9
Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 0
Query:   92 GWLFSAQQILLDHVLGD-ETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFA----NIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQ 258
            GW+    + +L  +L + + R VV+LG++ G  T  + E APR  +F VD WD   L   PS  + +      + +      +  FL N W    R           V PLRM   +GLA + A L    D++Y +     A +L  L      FP  ++ GD + + +VQ
Sbjct:   51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQ 209          
The following BLAST results are available for this feature:
BLAST of NO08G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26663.12.600e-12155.36hypothetical protein Naga_100001g149 [Nannochlorop... [more]
WP_015249477.11.500e-1728.37class I SAM-dependent methyltransferase [Singulisp... [more]
WP_074306949.18.500e-1627.18class I SAM-dependent methyltransferase [Singulisp... [more]
XP_005785813.15.300e-1029.24hypothetical protein EMIHUDRAFT_253146 [Emiliania ... [more]
XP_005770297.12.600e-928.65hypothetical protein EMIHUDRAFT_209892 [Emiliania ... [more]
XP_005773264.12.600e-928.65hypothetical protein EMIHUDRAFT_241782 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008792NSK008792Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02400.1NO08G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637856gene_3569Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g149gene3820Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02400.1NO08G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02400 ID=NO08G02400|Name=NO08G02400|organism=Nannochloropsis oceanica|type=gene|length=2012bp
ATCAGAAAAGCCAAATAACTCTACTCGACCCAAGGGATGCCGGATCAAGA
AGAAGGAGGGGACTATCGCGGCAGAGGGCACCGCCAGGGCAACCATCCAC
ATCATAATACCCGTGCACAAAAGCATGCCCGGCACCACAGCAACGGACAG
GATAGGCACGGAAGGGGCTCGCCGTCATCTTTATCCGTCTCGACTCACAT
GAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGATGC
GGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAACCA
GAAAGgtgagacgtagaacatttgtgggttgcgtgcatggttttggtgtg
tgagaggattgggagacatatactcatgcatcttctttataatcaatggg
tttattgccgacatggagtatcattttctttctgtggcgatggctctttc
tcactttcctaaagctcacataggtgtcgcttgctgccatgcgtctttac
acaatttacactcctaaacctcattttagccagcgtaaaacatcactgtc
gtatcgatcgaccagcacaatttttacaaacatcctgcttggatgaggct
cttatgccacattcaaaaattaaaagtcaagataaccgacccttgtcttc
acctctctttccctctttgccttatcataagTTTTGGGTGGCTTTTTTCA
GCCCAGCAGATCTTGCTGGATCATGTACTGGGTGACGAGACACGGGTGGT
TGTACAGCTGGGCGCCTACCTGGGCAAGACGACGCTCTTCATTGCAGAGC
ACGCCCCGCGGGCCTTGATCTTTGTGGTCGACCCCTGGGACAACGCCGTG
CTCAAAACGGAGCCCTCACTCAACAAGAACTTCGCCAACATCGACCTATT
CGACCGTGTGCCCTTCTATCAGACATTCCTCCGCAATACCTGGCACCTGG
CGGCGCGGCGTCGGCCTGACGAGGGAGATCGGCTGGTGGGCGTGGTACCA
CTCCGTATGGGGTTCGACGAAGGGCTGGCGCTGCTCAAGGCCGATCTGAG
CCTGCGGCCAGATGTCTTGTACTGGGAGGGCTTTCCCGATGAGGCGGGGC
TGCTGCAGACGCTGGGAACCGTGAAGGAAGCCTTCCCTGGTGTGGTAGTG
GTGGGCGACGGCTACAACTACCCGGAGGTGCAGGCAGGCTTGACTCGTGC
CAGCAAAGACCTGTACCAAGACCGCAAACCGTTTGTGGAGATGGGCAAGT
GCTGGACTTATTTGCGCCTGAAGATGGGCATGCTTTCAGAGCTGCGCGCG
AAGTACACGGCCACGGACAACCGTGCGGAGCGCACCGTGCTGGCAAGCAA
GGAGGTCGCTGGCGCCTCCTTTAAGGACCTGCTCTCGGGCCTCAAGTCAA
AGAGCCGTCAGCTCAAGGACGATGAGGCAGAAGAGAGGGCGGCCAGACGT
CGCGCAGAAGAAGAGGAGCGGGACCGCACCCACCGGGAGCGGGAGGCGGA
GGAGGAGGAGGAGCGGCAACGTCGTTGGCAGGAGGGATATAAGGGAAGGG
AGACGCCTCAAGAGGGAGAGGCGAGGAAGGACAGCGCGCAGGAAGAGAAA
GGGGGTATGGGGTGCCGCGAGTATCATGGTCGTAGACAAAGAGGGAGAGG
TCGAGACAGAGGAGAGGGAAGGATTGGATGGAGGGTTTGGGGGCAAGACT
ACGAAGGCGAAGGAAGGGGACGGCATGAGACTGCAGGTGGCGGTGGAAAT
GCGGTGGTGCCGAAAAGGCCGAGGCAAGAGATGGAGGAAGACAGCGAACA
TAAAAGCCAACAGCGCTGGGATCGCAATCGCAGGCACGGGGAGGTTGACG
AAAGTGAAGACGACGAGTGGACGAGCCGAGCCTCGGGGGATGAGGAGGAC
GAGGGCGGCCGGGGTTGGGTGTAGATATAGGCCTTTCCGCGGGTTACAAA
CAAAGCATGAGGCAAAACAAGAGTCCCGAAAGGCGACGTCGTCTTTAGAT
ATTTTCTTCTTC
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protein sequence of NO08G02400.1

>NO08G02400.1-protein ID=NO08G02400.1-protein|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MPDQEEGGDYRGRGHRQGNHPHHNTRAQKHARHHSNGQDRHGRGSPSSLS
VSTHMSVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQI
LLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTE
PSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMG
FDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDG
YNYPEVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTA
TDNRAERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAEERAARRRAEE
EERDRTHREREAEEEEERQRRWQEGYKGRETPQEGEARKDSAQEEKGGMG
CREYHGRRQRGRGRDRGEGRIGWRVWGQDYEGEGRGRHETAGGGGNAVVP
KRPRQEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDEGGR
GWV*
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Synonyms
Publications