NO08G02300, NO08G02300 (gene) Nannochloropsis oceanica

Overview
NameNO08G02300
Unique NameNO08G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2307
Alignment locationchr8:670061..672367 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:670061..672367 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02300 vs. NCBI_GenBank
Match: EWM26584.1 (hypothetical protein Naga_100001g136 [Nannochloropsis gaditana])

HSP 1 Score: 564.3 bits (1453), Expect = 5.800e-157
Identity = 376/636 (59.12%), Postives = 418/636 (65.72%), Query Frame = 0 
Query:    1 MTAVRTPEARDLPGLDALLDVILGPKLAQLYGGDTALLERIECKLGMVLDRHHPEKVETFHEMVGMTKSPIIKEKNLEIFVKSIIESLVEDASRPPVLAAKPKAPAPKAGGXXRGCASXXKHAKPAEGNDGRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPGPARKPAVTVESFDSVMADSDGQMRGQLHLVERCPTFVYSSWRDMDHDVYLFNFPMLGAAKREAHPNGVIAFFPGFGLYKEYTDKAFRSVAMLGDQPTKLRSREEIFAFLEKGTQMRSTAKGGSGEGARRKAYVAAWQFFQQYIFKEAVCTEDPFPPLARRVPSKSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPVPLPSTASTLEEKNGAGVVXXXXXXXXXXXXXXXXXXXXXXAGSVAVAGATGGKKDLGQMSGSDGAPSPSVEEVPDEMVEGLEEGAAWATLPDPDDRSIRGLFSSLRWRLEQLEDVWEGGDQFVWTLKSSQSNIDNLCDDLFGDPGDPEADDWKRMVGSSLDKTRKKLEEKLRAMGTQG--VATSRPAYVHGRALLDIYSDLKDAVGGFEEGMEGEVEGWDSMDFPRRASAASIPAVVATDADADVEE 635
            M+ V  P+  DLPGLD+LLDVILGP LA+LYG D ALLERIECKLGMVLDRHHPEKVE F+EMV MTKSP+IKEKNL++FVKSI+ +LVEDA                   XX     XX              XXXXXXXXXXXXXXXXXXX                                    RKP V +ES+DSVMADSD QMRGQLHLVERCP  VYSSWRD DHDVYL+ FP L AAKREA   G+IAFF GFGLYKE+T  AF+S+ M GDQP++LRSRE+IFAFLEKG+Q+RSTAKGGSGEGARRKAYVA WQFFQ+ +FKEAV   DPFPPLARRVP+K K                         XXXXXXX                      XXXXXXXXXXXXXXXXXXXXXX                     S+GAPSP  E   D  V     G  W T+PDP+DRSIRGLF+SLRWRL +LE+ WEGGDQFVWTLKSSQSNIDNLCD LFGD GDPEADDW+RMV SSLDK R+KLE+KLRA+G QG   AT +PAYVHGRALLD+YS+LK+AV GFEEG E EVEGWDS+DFP R    + P  VA  + A V E
Sbjct:    1 MSEVHVPDTGDLPGLDSLLDVILGPTLAELYGADIALLERIECKLGMVLDRHHPEKVEAFNEMVSMTKSPMIKEKNLQVFVKSIMTALVEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSLDEISRSSSSDDGDAGRNKKSV--------TIRKPVVAIESYDSVMADSDWQMRGQLHLVERCPALVYSSWRDADHDVYLYQFPQLAAAKREA--KGIIAFFMGFGLYKEFTAAAFKSIVMPGDQPSRLRSREDIFAFLEKGSQLRSTAKGGSGEGARRKAYVATWQFFQKNVFKEAVTEADPFPPLARRVPNKGK----------------------KRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEGAPSPLGEVAQDGAV--ATAGGVWNTMPDPEDRSIRGLFASLRWRLLRLEETWEGGDQFVWTLKSSQSNIDNLCDSLFGDAGDPEADDWRRMVSSSLDKARRKLEDKLRALGGQGGNAATGKPAYVHGRALLDVYSELKEAVAGFEEGKEAEVEGWDSLDFPVRGLTFA-PTTVAATSAASVSE 601
The following BLAST results are available for this feature:
BLAST of NO08G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26584.15.800e-15759.12hypothetical protein Naga_100001g136 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008803NSK008803Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02300.1NO08G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669515gene_3560Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g136gene3832Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02300.1NO08G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02300 ID=NO08G02300|Name=NO08G02300|organism=Nannochloropsis oceanica|type=gene|length=2307bp
ATGACAGCGGTACGGACGCCCGAGGCAAGAGATCTGCCGGGCCTGGATGC
ATTGCTGGACGTGATTTTGGGACCCAAGCTGGCTCAACTGTATGGCGGCG
ACACGGCCCTTCTTGAGCGCATCGAGTGCAAGCTGGGCATGGTCTTGGAC
AGGCATCACCCGGAAAAGGTGGAGACCTTCCACGAGATGGTCGGCATGAC
CAAATCACCCATCATCAAGGAGAAGAACCTCGAGATCTTTGTCAAGAGCA
TCATTGAGAGCCTCGTGGAGGATGCCTCCCGGCCCCCAGTACTTGCAGCA
AAGCCTAAGGCACCTGCGCCCAAGGCAGGCGGCGGTGGTCGTGGCTGTGC
GAGCAAAAAGAAGCATGCCAAGCCAGCAGAAGGAAACGATGGGAGGCTGG
CCAAGCGTGCCAAGAAGCCGTCGTCCGCAGTGACAAATGCCGCGGCGTCC
AAGTCCTCGGCGGCAGACAGCGTATCTTCTCTGGACGAAATAAGCAGGTC
CAGCATGTCGGACGACGAAAGCGCTGCCGCCTCCGCACCGAAGAAGGTCG
CTGCCCCTGGTCCTGCGCGCAAGCCGGCTGTAACGGTGGAGAGCTTTGAC
AGCGTGATGGCGGACTCGGACGGCCAGATGCGAGGCCAGCTGCATCTGGT
GGAGCGTTGCCCAACCTTCGTGTACAGCTCCTGGCGCGATATGGACCATG
ACGTTTACTTGTTCAATTTCCCTATGCTGGGAGCGGCCAAGCGTGAGGCG
CACCCTAATGGCGTCATTGCCTTCTTTCCCGGCTTCGGTCTCTACAAGGA
ATATACGGATAAGGCCTTCCGTAGCGTGGCCATGCTTGGCGACCAGCCCA
CGAAGCTGCGCTCACGGGAGGAGATCTTCGCTTTCCTGGAGAAGGGCACA
CAGATGCGCTCCACGGCCAAGGGCGGCAGCGGGGAGGGGGCGCGTCGCAA
GGCCTACGTGGCAGCCTGGCAGTTCTTTCAGCAATATATCTTCAAGGAGG
CTGTCTGCACCGAGGACCCTTTCCCCCCTCTCGCCCGCCGCGTCCCCAGC
AAGAGCAAGAAGCGCAGCTCCACCTCCTCAACCCCCAAGAAGCCCCGCGC
CCATGCCGCCTCTTTGCTCGTAGCCTTGCCACCACTCCCACCAGCGGCAC
CTCTGACCGTACCTGTCCCCTTGCCGTCCACCGCGTCGACGTTGGAGGAG
AAAAATGGTGCTGGTGTAGTTGCGTTGGCTTCCCCGGGACCACCGCCCCT
AGCAACCACCACCCTGCCCACACCGCCGCAGCTAGCAGCAGGCTCAGTGG
CGGTAGCAGGGGCGACAGGAGGAAAGAAAGATCTAGGACAAATGTCGGGG
TCGGACGGCGCACCTTCGCCATCAGTGGAGGAGGTGCCTGACGAGATGGT
GGAGGGACTGGAAGAGGGGGCCGCGTGGGCCACGCTGCCCGACCCTGACG
ACCGGTCGATCCGGGGCTTGTTTTCTTCATTGCGCTGGCGGCTAGAGCAG
CTGGAGGACGTTTGGGAGGGTGGGGACCAATTTGTGTGGACCCTCAAGAG
TTCGCAGAGCAACATTGACAATTTGTGTGATGACCTTTTCGGGGACCCGG
GAGATCCCGAAGCGGACGACTGGAAGCGGATGGTGGGCAGTAGCTTGGAC
AAGACGCGGAAGAAACTCGAGGAGAAGCTGCGGGCTATGGGGACTCAGGG
GGTTGCGACGAGTAGGCCGGCCTATGTGCATGGAAGGGCCTTGTTGGACA
TTTACTCAGATTTGAAGGATGCGGTAGGGGGTTTCGAGGAAGGGATGGAG
GGAGAGGTGGAAGGATGGGACTCCATGGACTTCCCACGGCGTGCCTCTGC
CGCCTCGATTCCTGCCGTTGTGGCTACTGATGCTGATGCCGATGTGGAGG
AGGAGAAAATGAAGGAAAACGTCGGAATACCTTTGGCCGGTGAGGGGAAG
TTAGAGGCCGTGGAGAAAGGAATGACGGAGGAAGGGATTTTCGAGGCGGC
GGAGATAGAAGTGGAGATGGAAAGGGAAGAGGGGCAGATGAGGGAGGGGA
CAGAGGAGGAGGAAAGCGAGATAACGCCCCTCCCAGTTACTGAAGAGGAC
GGGGACGACCAGGAGAAGGACGGTTCCGTGGCGGCGGAGCTCCCGGGAGG
CTCCATGGATGAGGAGGGGGCAGGCACCTCCTCCTCTTCCAACGATGTGG
CCACCATCTCTGCCACTCCTAAGCCCGCGCACGCTGATAAAGGCCATAAT
GAGGAGGAAGAGGAGGAGAGGGGGGAGGGGGGGAAGGATTTAGTGCCTGT
GCCCTAA
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protein sequence of NO08G02300.1

>NO08G02300.1-protein ID=NO08G02300.1-protein|Name=NO08G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=769bp
MTAVRTPEARDLPGLDALLDVILGPKLAQLYGGDTALLERIECKLGMVLD
RHHPEKVETFHEMVGMTKSPIIKEKNLEIFVKSIIESLVEDASRPPVLAA
KPKAPAPKAGGGGRGCASKKKHAKPAEGNDGRLAKRAKKPSSAVTNAAAS
KSSAADSVSSLDEISRSSMSDDESAAASAPKKVAAPGPARKPAVTVESFD
SVMADSDGQMRGQLHLVERCPTFVYSSWRDMDHDVYLFNFPMLGAAKREA
HPNGVIAFFPGFGLYKEYTDKAFRSVAMLGDQPTKLRSREEIFAFLEKGT
QMRSTAKGGSGEGARRKAYVAAWQFFQQYIFKEAVCTEDPFPPLARRVPS
KSKKRSSTSSTPKKPRAHAASLLVALPPLPPAAPLTVPVPLPSTASTLEE
KNGAGVVALASPGPPPLATTTLPTPPQLAAGSVAVAGATGGKKDLGQMSG
SDGAPSPSVEEVPDEMVEGLEEGAAWATLPDPDDRSIRGLFSSLRWRLEQ
LEDVWEGGDQFVWTLKSSQSNIDNLCDDLFGDPGDPEADDWKRMVGSSLD
KTRKKLEEKLRAMGTQGVATSRPAYVHGRALLDIYSDLKDAVGGFEEGME
GEVEGWDSMDFPRRASAASIPAVVATDADADVEEEKMKENVGIPLAGEGK
LEAVEKGMTEEGIFEAAEIEVEMEREEGQMREGTEEEESEITPLPVTEED
GDDQEKDGSVAAELPGGSMDEEGAGTSSSSNDVATISATPKPAHADKGHN
EEEEEERGEGGKDLVPVP*
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Synonyms
Publications