NO08G02290, NO08G02290 (gene) Nannochloropsis oceanica

Overview
NameNO08G02290
Unique NameNO08G02290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr8:668546..669322 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:668546..669322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02290 vs. NCBI_GenBank
Match: EWM26692.1 (hypothetical protein Naga_100001g135 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 4.800e-15
Identity = 89/249 (35.74%), Postives = 109/249 (43.78%), Query Frame = 0 
Query:   13 LVVVPASSGNGIASTSHPLSRGSTGNGTHTTVARKEKHVVLDDDTVPQRPKMVRVPTKAEFNPKGLEXXXXXXXXXXXXXXXXXMIAKGPATLKTRYSDGGIPLKPDDTVAAVTHIYYAPSRTQSVAIQRREGRVTPPLPLPQPKKILKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQASYRGNTGDSSTH---ALPLGACSVRRSMRQLSFADELGRELHEVTHAHNLQYASNYRQPVPIGCCIVS 259
            +V  PAS+  G  ST        TG G        ++H+ ++D+   +RP + RVPTKAEF   G+E    XXXXX               T+    ++ G         A   H Y  PS  Q    QRRE   TP    P+PK ILK                                S  G +  S  +   A PLG    RRSMRQLSFADELGR+L EVTHAHNLQY S+ R   P+ CC VS
Sbjct:    9 VVFAPASNVRGAFST--------TGKGV-------KQHITIEDELRSRRPGITRVPTKAEF---GIEEGEDXXXXXMASGNEKEASKPTGKTISDAITELG---NSSGNGAPPAHAYNKPS-LQPKLYQRRED--TP----PEPKAILK--------------KVSSYHLPPPSTQNGANPSTNGTSSSSPMNGPSAPPLGRDMSRRSMRQLSFADELGRDLQEVTHAHNLQYGSHSRHSSPLMCCSVS 215
The following BLAST results are available for this feature:
BLAST of NO08G02290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26692.14.800e-1535.74hypothetical protein Naga_100001g135 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008805NSK008805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02290.1NO08G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g135gene3833Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02290.1NO08G02290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02290 ID=NO08G02290|Name=NO08G02290|organism=Nannochloropsis oceanica|type=gene|length=777bp
ATGAACGGGAGCAGCAGAGCCTCATATCAAGATGGGTTAGTAGTGGTGCC
TGCGAGCTCTGGGAATGGAATCGCCAGCACGTCCCATCCCCTATCAAGAG
GAAGCACAGGCAATGGTACCCATACGACTGTAGCAAGAAAGGAGAAACAT
GTAGTTTTAGACGACGACACGGTACCCCAGCGACCCAAGATGGTACGGGT
TCCAACAAAGGCCGAATTTAATCCCAAAGGCCTAGAAGATGAAGAGGAGG
AGGAGGAGAATGAGGAGGAGGAGGAGGAGGAGGAGGACATGATAGCGAAG
GGCCCAGCCACATTAAAGACGAGATACAGCGACGGGGGGATCCCCCTGAA
GCCGGATGACACTGTGGCGGCGGTTACACACATATATTACGCACCAAGCC
GCACACAATCGGTAGCAATCCAAAGACGAGAAGGACGGGTCACTCCCCCC
CTTCCGCTCCCGCAGCCGAAAAAAATATTGAAGAAAGTTTCAGCATACCA
ACAACCCCCTCCTCCTCAAGCATCGACCTTAAACGGAGGCTCCAACACCA
ACAGCAGTAGTAACAACAGTGTTCAGGCTTCTTATCGAGGCAATACGGGT
GACTCGTCCACGCATGCACTTCCCTTGGGTGCGTGTTCGGTCCGACGCTC
CATGCGGCAGTTGAGCTTTGCGGACGAGCTTGGTAGGGAGCTCCACGAGG
TGACACACGCACACAACCTGCAGTACGCGAGCAACTATCGACAACCCGTG
CCCATAGGCTGCTGTATCGTGTCGTGA
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protein sequence of NO08G02290.1

>NO08G02290.1-protein ID=NO08G02290.1-protein|Name=NO08G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MNGSSRASYQDGLVVVPASSGNGIASTSHPLSRGSTGNGTHTTVARKEKH
VVLDDDTVPQRPKMVRVPTKAEFNPKGLEDEEEEEENEEEEEEEEDMIAK
GPATLKTRYSDGGIPLKPDDTVAAVTHIYYAPSRTQSVAIQRREGRVTPP
LPLPQPKKILKKVSAYQQPPPPQASTLNGGSNTNSSSNNSVQASYRGNTG
DSSTHALPLGACSVRRSMRQLSFADELGRELHEVTHAHNLQYASNYRQPV
PIGCCIVS*
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Synonyms
Publications