NO08G02270, NO08G02270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G02270 vs. NCBI_GenBank
Match: EWM26762.1 (mitochondrial import inner membrane translocase subunit tim22 [Nannochloropsis gaditana]) HSP 1 Score: 345.9 bits (886), Expect = 8.300e-92 Identity = 167/175 (95.43%), Postives = 172/175 (98.29%), Query Frame = 0 Query: 22 KRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197 K D+LFT+PPPFPLPFYKYVSLPQTPAG VAVAPPNPQENCVGRSVFGA+AGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQ+RLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFA FSG+MEVVMGPH Sbjct: 33 KPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207
BLAST of NO08G02270 vs. NCBI_GenBank
Match: EJK70956.1 (hypothetical protein THAOC_07645 [Thalassiosira oceanica]) HSP 1 Score: 159.1 bits (401), Expect = 1.400e-35 Identity = 85/197 (43.15%), Postives = 118/197 (59.90%), Query Frame = 0 Query: 3 SPPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197 S P D+ P + R L P+P P+ + + P A PPN E+C ++ G I G +G++MG+FLGA+ DM+P + II G+E PQAP EQMR RAT ++ +W R F +T +F G +C+VEK+RGKHD +N+V+SGC GAA+ AKQGPQA+ GC GFA+FS V++ MG H Sbjct: 56 STPAGPLVDSSASPHQVDMSRGALTMRGLPYPQPWARANASP-------AELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMGTH 245
BLAST of NO08G02270 vs. NCBI_GenBank
Match: CBJ27223.1 (Mitochondrial import inner membrane translocase subunit TIM22 homolog [Ectocarpus siliculosus]) HSP 1 Score: 156.0 bits (393), Expect = 1.200e-34 Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0 Query: 35 LPFY-KYVSLPQTPAGTVAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195 LPF+ +V P A PP E+C + + G + GAG+G + G+FLGAMGDM P + +INGRE PQAP EQ RLAY+ T +R RNF + +A+F G +CV+EK RGK D N+V +GC GAA KQGPQAAC GC G A FS +M+ +MG Sbjct: 32 LPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 191
BLAST of NO08G02270 vs. NCBI_GenBank
Match: GAX14591.1 (hypothetical protein FisN_6Lh371 [Fistulifera solaris]) HSP 1 Score: 154.1 bits (388), Expect = 4.600e-34 Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 0 Query: 15 PPV----HGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194 PPV P D + P+PLP +K V+ P P PP+ +C G+ G I GAG+G +MG+FLGA+ D +P + +I GR+ PQAP EQMR+ RAT E+ +WA NF +T +F+G +C+VEK+RGK+D +N+V SGC GAA+ AK GPQ+A LGC GFA FS V++ M Sbjct: 44 PPVPARDDSPYSIDSITRKSLPYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 221
BLAST of NO08G02270 vs. NCBI_GenBank
Match: GAX22122.1 (hypothetical protein FisN_6Hh371 [Fistulifera solaris]) HSP 1 Score: 152.9 bits (385), Expect = 1.000e-33 Identity = 89/193 (46.11%), Postives = 120/193 (62.18%), Query Frame = 0 Query: 4 PPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194 PP T D+P H I R L P+PLP +K V+ P P PP+ +C G+ G I GAG+G +MG+FLGA+ D +P + +I GR+ PQAP EQMR+ RAT E+ +WA NF +T +F+G +C+VEK+RGK+D +N+V SGC GAA+ AK GPQ+A LGC GFA FS V++ M Sbjct: 84 PPVPTRDDSPYSIDH--ITRRSL-----PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 261
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_002176835.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51298.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 150.2 bits (378), Expect = 6.700e-33 Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 0 Query: 61 NCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194 +C G++ G I G +G++MG+FLGAM D +P + +I GRE PQAP EQ+++ RAT ++ +W RNF +T +F G +C+VEK+RGKHD +N+V SGC GAAL AK GPQAA +GC GFA FS V++ M Sbjct: 4 SCGGKAAIGVIGGGVMGLLMGVFLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136
BLAST of NO08G02270 vs. NCBI_GenBank
Match: OEU10163.1 (mitochondrial import inner membrane translocase, subunit Tim17/22, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 150.2 bits (378), Expect = 6.700e-33 Identity = 70/134 (52.24%), Postives = 93/134 (69.40%), Query Frame = 0 Query: 60 ENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194 ++C G++ G G +G++MG+FLGA+ D SP I + GR+ PQAP EQ+R RAT E+ +W RNF +T +F G +C+VEKFRGKHD +N V+SGC GAAL AK GPQAA +GC GFA FS V++ M Sbjct: 1 DSCGGKAAIGVFGGGIMGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_002288595.1 (tim22-like protein [Thalassiosira pseudonana CCMP1335] >EED94031.1 tim22-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 133.7 bits (335), Expect = 6.400e-28 Identity = 60/121 (49.59%), Postives = 87/121 (71.90%), Query Frame = 0 Query: 76 LGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197 +G++MG+F+GA+ D++P + +ING+ EQMR RAT ++ +W R F +T +F G +C+VEK+RGKHD +NAV+SGC GAA+ AKQGPQA+ +GC GFA FS V++ +MG H Sbjct: 1 MGLLMGVFMGALTDLTPPVTVINGK--------EQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNAVVSGCITGAAMQAKQGPQASAIGCGGFAAFSLVIDSIMGTH 113
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_008899567.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI54938.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK94774.1 hypothetical protein, variant [Phytophthora parasitica] >ETL48173.1 hypothetical protein, variant [Phytophthora parasitica] >ETM01269.1 hypothetical protein, variant [Phytophthora parasitica] >ETM54455.1 hypothetical protein, variant [Phytophthora parasitica] >ETN14916.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO83690.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP24757.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP52739.1 hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 127.5 bits (319), Expect = 4.600e-26 Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 0 Query: 43 LPQTPAGTVAVAPPNP-QENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195 LP P + PNP E+C G+ A G +G + G+ LG+ ++P +P+ RE P+ P E + ++R T +C +W NF+ ++A+FSG++C EK RG+HD N +++GC GAAL+A QG QA CLGCAGFA FS + V G Sbjct: 50 LPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESLAGSWRVTAGKCRYWGNNFLVISAMFSGLECATEKIRGRHDVGNELVAGCATGAALAAGQGIQAQCLGCAGFAAFSYAINVFTG 202
BLAST of NO08G02270 vs. NCBI_GenBank
Match: OWZ02326.1 (Mitochondrial Protein Translocase [Phytophthora megakarya]) HSP 1 Score: 125.6 bits (314), Expect = 1.800e-25 Identity = 70/177 (39.55%), Postives = 99/177 (55.93%), Query Frame = 0 Query: 29 NPPPFPLPFYK----------YVSLPQTPAGTVAVAPPNP-QENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195 NP FP F K + LP P + PNP E+C G+ A G +G + G+ LG+ ++P +P+ RE P+ P E M ++R T +C +W NF+ ++A+FSG++C EK RG+HD N +++GC GAAL+A QG QA CLGCAGFA FS + V G Sbjct: 26 NPFLFPRSFLKMHLLHDTVGIHPFLPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESMVGSWRVTKGKCRYWGNNFLVISAMFSGLECASEKIRGRHDVGNELVAGCATGAALAAGQGFQAQCLGCAGFAAFSYAINVFTG 202 The following BLAST results are available for this feature:
BLAST of NO08G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02270 ID=NO08G02270|Name=NO08G02270|organism=Nannochloropsis oceanica|type=gene|length=591bpback to top protein sequence of NO08G02270.1 >NO08G02270.1-protein ID=NO08G02270.1-protein|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bpback to top Synonyms
Publications
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