NO08G02250, NO08G02250 (gene) Nannochloropsis oceanica

Overview
NameNO08G02250
Unique NameNO08G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr8:660134..661327 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:660134..661327 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G02250 vs. NCBI_GenBank
Match: EWM26771.1 (hypothetical protein Naga_100001g131 [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 2.700e-90
Identity = 177/265 (66.79%), Postives = 210/265 (79.25%), Query Frame = 0 
Query:    1 MARDSLLLWGAGLSTAALLYYIVIGLPDGSG-KDDGDDDEPALSKRKLISLWSMLVKNMELHKYQIQQVLHQQRAQLAQQGTEVPDEHIVAMYKQNFEEILENVQVQILGHFEVTEEELEAATELYKDDPEVSALVVQLEGFYLGEGGATGGEGLEGDIGVEELEKFIVEEFGDAWCDAYEKTMREFQALGREPSEADQEVLLDFQSQASVRAQDNLTDLLQKYGLTSTDFQRLVLKHQADPRINQALQHSQTVQTEALAKMGLR 265
            MARDSL L GAG+++ ALLYY+V+G P  +G  D+ DDD+PALSKRKL+S+WSMLVKNMELHKYQ+QQVL+QQRAQLAQQGTEVPDE I AMYKQNFEEILENVQ QIL HF+V E+E EAATE YKDD EVS +V QLE  Y G+ GA G +    D+G EELE+ I  +FG+AWC A+EKT R+FQA G++ +EADQE+LL+F +QAS  AQDNL + L+KY LT  DFQ LVL HQ D RI QAL  SQ VQ EALA++G R
Sbjct:    1 MARDSLFLLGAGIASMALLYYVVVGPPGKAGSNDERDDDQPALSKRKLVSVWSMLVKNMELHKYQVQQVLYQQRAQLAQQGTEVPDEDIEAMYKQNFEEILENVQTQILEHFDVAEDEFEAATECYKDDSEVSGMVHQLEALYRGDSGAPGEKDAVRDVGAEELERIIKTDFGEAWCSAFEKTARDFQAQGKDMTEADQELLLEFHTQASGHAQDNLAESLKKYSLTPADFQHLVLIHQEDSRIKQALDQSQNVQREALARLGFR 265
The following BLAST results are available for this feature:
BLAST of NO08G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26771.12.700e-9066.79hypothetical protein Naga_100001g131 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008809NSK008809Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02250.1NO08G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582583gene_3555Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g131gene3837Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02250.1NO08G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02250 ID=NO08G02250|Name=NO08G02250|organism=Nannochloropsis oceanica|type=gene|length=1194bp
ATGGCCCGCGACTCACTACTGCTGTGGGGAGCTGGTCTTTCCACCGCCGC
CCTCTTGTACTACATCGTCATAGGGCTTCCTGACGGGAGCGGCAAGGATG
ATGGAGgtaagttcattcctcgttctgaaggggggttggttgtaggccgt
acgcttctcatgtgtaactctacgtgaacagtatatgagactcattcccc
aatgctctgccttcacccaacccatttcacacgaccaccaatcagACGAC
GATGAGCCGGCACTGAGCAAGCGGAAGTTGATAAGTCTGTGGAGCATGTT
AGTCAAAAACATGGAGCTGCACAAGTACCAGATCCAGCAGGTCTTGCACC
AGCAGCGAGCCCAACTTGCGCAACAAGGTACTGAGGTCCCTGACGAGCAT
ATTGgtacgtactcgtggagacgggacctaaggggggaggagaaaacgag
aggtgcgtgtcaaattatgcttcatgacgcttttaaattcagggactcta
tagtctgatagcatggcaagccttggttcttgttcgaggctctcatactt
ttctacgtgctctaacccctccgccggcttgccggtagacttattcagat
gaaaatgtttacgaccagtcacttaagatgtttcatatcctaattacaac
accaatacaagTTGCTATGTACAAGCAGAATTTTGAGGAGATCCTCGAAA
ACGTCCAAGTGCAAATTTTGGGGCACTTCGAGGTGACGGAGGAGGAGCTT
GAGGCAGCAACGGAGCTCTACAAGGACGACCCTGAGGTCTCGGCATTGGT
AGTGCAGTTGGAGGGCTTTTACCTGGGCGAGGGAGGGGCCACTGGGGGGG
AAGGTTTGGAGGGAGACATTGGTGTGGAAGAGCTGGAGAAATTTATTGTG
GAGGAATTTGGGGATGCATGGTGCGATGCATATGAGAAGACGATGCGGGA
ATTCCAGGCTTTAGGCCGTGAACCTTCCGAGGCCGACCAGGAGGTGCTCC
TTGACTTCCAGTCACAGGCATCAGTCCGCGCTCAGGATAATCTTACCGAC
TTGCTCCAGAAATACGGATTGACGTCCACAGATTTCCAACGATTAGTTTT
GAAGCACCAGGCTGACCCCCGCATCAACCAAGCCTTGCAGCACTCCCAGA
CGGTGCAAACCGAGGCACTGGCCAAAATGGGTCTACGCGTTTGA
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protein sequence of NO08G02250.1

>NO08G02250.1-protein ID=NO08G02250.1-protein|Name=NO08G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MARDSLLLWGAGLSTAALLYYIVIGLPDGSGKDDGDDDEPALSKRKLISL
WSMLVKNMELHKYQIQQVLHQQRAQLAQQGTEVPDEHIVAMYKQNFEEIL
ENVQVQILGHFEVTEEELEAATELYKDDPEVSALVVQLEGFYLGEGGATG
GEGLEGDIGVEELEKFIVEEFGDAWCDAYEKTMREFQALGREPSEADQEV
LLDFQSQASVRAQDNLTDLLQKYGLTSTDFQRLVLKHQADPRINQALQHS
QTVQTEALAKMGLRV*
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Synonyms
Publications