NO08G02210, NO08G02210 (gene) Nannochloropsis oceanica

Overview
NameNO08G02210
Unique NameNO08G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1543
Alignment locationchr8:651394..652936 +

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Properties
Property NameValue
DescriptionCaltractin ICL1c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:651394..652936 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_009036937.1 (hypothetical protein AURANDRAFT_26261, partial [Aureococcus anophagefferens] >EGB08204.1 hypothetical protein AURANDRAFT_26261, partial [Aureococcus anophagefferens])

HSP 1 Score: 210.7 bits (535), Expect = 3.700e-51
Identity = 108/155 (69.68%), Postives = 129/155 (83.23%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTFT 178
            R GL+EEEIEEIREAFNLFD  GSGTID +ELK AMQSLGF+AKN TIYQMI D+DKD +G    SIDF+ FL MMT KMSDK+++EDI+KVFN+FD+   G I+ ++LKRVAKELGE MS+AEL EMI RAD DQDGE+S ++FY IMT++TFT
Sbjct:    2 RPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDKDNSG----SIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELMEMIERADTDQDGEISPDEFYGIMTKKTFT 152
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_024583966.1 (centrin 2 [Plasmopara halstedii] >CEG47597.1 centrin 2 [Plasmopara halstedii])

HSP 1 Score: 208.4 bits (529), Expect = 1.900e-50
Identity = 107/155 (69.03%), Postives = 128/155 (82.58%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTFT 178
            R GL++EEIEEIREAFNLFD  GSGTID +ELK AMQSLGF+AKN  IYQMI D+DKD +G    SIDF+ FL MMT KMSDK+S+EDI+KVFN+FD+   G IS ++LKRVAKELGE M++AEL EMI RAD DQDGE++ E+FY IMT++TFT
Sbjct:   16 RPGLSQEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQIIYQMIGDIDKDNSG----SIDFEEFLDMMTAKMSDKDSREDIQKVFNLFDDDQTGKISLRNLKRVAKELGETMTDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 166
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: CCA23977.1 (calciumdependent protein 4 putative [Albugo laibachii Nc14])

HSP 1 Score: 206.8 bits (525), Expect = 5.400e-50
Identity = 106/155 (68.39%), Postives = 127/155 (81.94%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTFT 178
            R G+T++E+EEIREAFNLFD  GSGTID +ELK AMQSLGF+AKN  IYQMIAD+DKDG+G    SIDFD FL MMT KMSDK ++EDI+KVF +FD+   G IS ++LKRVA+ELGE MS+AEL EMI RAD DQDGE+  ++FY IMTR+TFT
Sbjct:   19 RPGITQDEVEEIREAFNLFDTDGSGTIDPKELKTAMQSLGFEAKNQIIYQMIADIDKDGSG----SIDFDEFLDMMTAKMSDKNTREDIQKVFALFDDDQTGKISLRNLKRVARELGETMSDAELLEMIERADTDQDGEIKPDEFYAIMTRKTFT 169
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: CCI10237.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 205.3 bits (521), Expect = 1.600e-49
Identity = 104/155 (67.10%), Postives = 127/155 (81.94%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTFT 178
            R G+T++EIEEIREAFNLFD  GSGTID +ELK AMQSLGF+AKN  IYQM+AD+DKDG+G    +IDFD FL MMT KMSDK ++EDI+KVF +FD+   G I+ ++LKRVA+ELGE MS+AEL EMI RAD DQDGE+  ++FY IMTR+TFT
Sbjct:   19 RPGITQDEIEEIREAFNLFDTDGSGTIDPKELKSAMQSLGFEAKNQIIYQMVADIDKDGSG----NIDFDEFLDMMTAKMSDKNTREDIQKVFTLFDDDQTGKITLRNLKRVARELGETMSDAELLEMIERADTDQDGEIKPDEFYAIMTRQTFT 169
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ69181.1 (hypothetical protein SteCoe_33159 [Stentor coeruleus] >OMJ88632.1 hypothetical protein SteCoe_9415 [Stentor coeruleus])

HSP 1 Score: 202.6 bits (514), Expect = 1.000e-48
Identity = 104/154 (67.53%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EMI RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ78196.1 (hypothetical protein SteCoe_22042 [Stentor coeruleus] >OMJ83366.1 hypothetical protein SteCoe_15693 [Stentor coeruleus] >OMJ92845.1 hypothetical protein SteCoe_4293 [Stentor coeruleus])

HSP 1 Score: 202.6 bits (514), Expect = 1.000e-48
Identity = 104/154 (67.53%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EMI RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ88915.1 (hypothetical protein SteCoe_9020 [Stentor coeruleus] >OMJ90639.1 hypothetical protein SteCoe_6914 [Stentor coeruleus] >OMJ96065.1 hypothetical protein SteCoe_448 [Stentor coeruleus])

HSP 1 Score: 202.6 bits (514), Expect = 1.000e-48
Identity = 104/154 (67.53%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EMI RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ90175.1 (hypothetical protein SteCoe_7572 [Stentor coeruleus])

HSP 1 Score: 202.6 bits (514), Expect = 1.000e-48
Identity = 104/154 (67.53%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EMI RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYINIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ82313.1 (hypothetical protein SteCoe_17028 [Stentor coeruleus])

HSP 1 Score: 202.2 bits (513), Expect = 1.300e-48
Identity = 103/154 (66.88%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EM+ RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMVERADSDGDGQVSAEDFYNIMTKKAF 175
[Close]
BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ68406.1 (hypothetical protein SteCoe_34145 [Stentor coeruleus])

HSP 1 Score: 201.8 bits (512), Expect = 1.700e-48
Identity = 103/154 (66.88%), Postives = 126/154 (81.82%), Query Frame = 0 
Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G ++ K+L+RVAKELGE M++ EL EMI RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYVTIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSQEDFYNIMTKKAF 175
The following BLAST results are available for this feature:
BLAST of NO08G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009036937.13.700e-5169.68hypothetical protein AURANDRAFT_26261, partial [Au... [more]
XP_024583966.11.900e-5069.03centrin 2 [Plasmopara halstedii] >CEG47597.1 centr... [more]
CCA23977.15.400e-5068.39calciumdependent protein 4 putative [Albugo laibac... [more]
CCI10237.11.600e-4967.10unnamed protein product [Albugo candida][more]
OMJ69181.11.000e-4867.53hypothetical protein SteCoe_33159 [Stentor coerule... [more]
OMJ78196.11.000e-4867.53hypothetical protein SteCoe_22042 [Stentor coerule... [more]
OMJ88915.11.000e-4867.53hypothetical protein SteCoe_9020 [Stentor coeruleu... [more]
OMJ90175.11.000e-4867.53hypothetical protein SteCoe_7572 [Stentor coeruleu... [more]
OMJ82313.11.300e-4866.88hypothetical protein SteCoe_17028 [Stentor coerule... [more]
OMJ68406.11.700e-4866.88hypothetical protein SteCoe_34145 [Stentor coerule... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02210.1NO08G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582566gene_3549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02210.1NO08G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02210 ID=NO08G02210|Name=NO08G02210|organism=Nannochloropsis oceanica|type=gene|length=1543bp
TTTGACCCCTCGCTCGTTATATTCGCTAAAGCAAGTGGGCGAGCGCAACA
AACCCGGAACGACCCGGAAGACAACGTTGTTGTGTGTTGCCAAAAAATCG
GAACTGCTCAAGCAGAGCACATGCCCTCATGCGAAACCGTCATACCTTAG
CCATGATCATCAAGACTTTTCTTCACATCGTTAAAATTTGCCTTCCCATC
CTAAACTAAACTTAAAAAACACAGCTCGCCGGCCTCGACGCCCACATAAT
CACCATCATAAAACATCATCAATGgtaagtccatctattcgccctccatc
ccccgccgtacgcgtcaatacatgcacaccaccacacaccacagCGTCGT
AGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTGGGGCGCTGA
CTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGgtacttcgggat
ggaagggaggggagaaccgattggcttgcctgcagaaataaatgaagcgc
gagccttaagctgaggagagggtgttttgactgaattcaggagggccttt
tgagttcgaacttgtccatacttcggatcggctatgcggtcgtgcctgat
tttcctcccctatctcgccatcccatccagacccatgtactgaacataac
cccgccttactatcttccatgcacagAGATCCGTGAGGCGTTCAACCTGT
TCGATTTGCAAGGAAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCT
ATGCAGTCTCTGGGCTTTGACGCCAAGAACCACACCATCTACCAAATGAT
AGCTGACATGGACAAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACT
TTGACGGGTTCCTACACATGATGACGACCAAGATGAGCGACAAGGAAAGC
AAAGAGGATATTGAAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGG
CTCCATCTCCTTCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGA
ACATGTCGGgtacgtttgcgtgtgaatgtgtgtgcgtacgattcgtttga
ccacttcttaataatcatattagactgtcattatgtataaattaattgga
tctgagagaaagccggtcccttctttcgacccaccaaagcctcctttctt
ccctcttgcctatactcacacaacagAGGCGGAGCTGAAGGAGATGATCC
TACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGACTTTTAC
AATATCATGACCCGACGAACATTCACTTAATTTTAGCCAAAAGGAAGGGG
AAGGAAGGATGAAAAATGCTTCGTTCTCGGCTCTATTTCCTGACGACGAT
TGAAGGAGGAAAAAGTTAAGCCTGGGAGATAAAAATTGAATAGTCGCGCA
TGCATTCTCCCAAGAGAGAAGCATTGGGGGGGTGTAGCACTTGTGCTGGT
ATGAAGAGGACAATAATGTAGGGTAGTGGCATTTGGAAGAGAGCAAAAAG
ACGAAGGAGTGATCGAAAGCAAGAAAGCCAGCGAAGTCAGTCA
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protein sequence of NO08G02210.1

>NO08G02210.1-protein ID=NO08G02210.1-protein|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MRRSPSAKNQGGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTID
VRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTT
KMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEM
ILRADADQDGEVSFEDFYNIMTRRTFT*
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Synonyms
Publications